mRNA_10617 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352442
Unique NamemRNA_10617
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA)

HSP 1 Score: 371 bits (952), Expect = 8.360e-126
Identity = 234/235 (99.57%), Postives = 234/235 (99.57%), Query Frame = 1
Query:  100 MSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMGFGGFSGGKR 804
            MSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AMMGFGGFSGGKR
Sbjct:    1 MSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGGKR 235          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 3.170e-55
Identity = 141/232 (60.78%), Postives = 166/232 (71.55%), Query Frame = 1
Query:  118 SDDLGDKQVSNVV-RRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRK-SAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-MMGFGGFSGGKR 804
            S DLG KQV NV  RR+WD + YE KAKER+E+GD+ +E    +      KEEFQPA  GA GPAGS RAYLK R  KVDL S+L KTQV+T+A+  S QGG++CE+CKC LKDSI YLDHINGKKHQR LG+SMRVERS+V  VK++L   + R ED  + SGA +K SA  E++ R+ E     XXXXXXXXXXXXXXXXXXXXXXXX        A MMGFGGF GG +
Sbjct:    2 SKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREED--RISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGGSK 231          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA)

HSP 1 Score: 169 bits (427), Expect = 9.710e-47
Identity = 93/169 (55.03%), Postives = 124/169 (73.37%), Query Frame = 1
Query:  148 NVVRRSWDVELYEKKAKERLER--GDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERL 648
            NV RR+WD+E +EK AKERLE+    +VE+ +P   +    +EEFQ A  GA GP GS+RAYLK R   + LE ++ K QV+T ++A   QGGYWC++C+CLLKDS+AYLDHINGKKHQ+ALG+SMRVER  V  VKE+L+ L+ R ED  K +G PR+SA+  Y+++L
Sbjct:   17 NVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVR---KREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRR-EDEKKKAG-PRESAIDAYQKKL 180          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A4D9DA28_9STRA (U1-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA28_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.890e-43
Identity = 92/169 (54.44%), Postives = 123/169 (72.78%), Query Frame = 1
Query:  148 NVVRRSWDVELYEKKAKERLER--GDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERL 648
            NV RR+WD+E +EK AKERLE+    +VE+ +P   +    +EEFQ A  GA GP GS+RAYLK R   + LE ++ K QV+T ++A   QGGYWC++C+CLLKDS+AYLDHINGKKHQ+ALG+SMRVER  V  VKE+L+ L+ R ++  KA   PR+SA+  YE++L
Sbjct:   17 NVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVR---KREEFQAAETGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKRKAG--PRESAIDAYEKKL 180          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.950e-39
Identity = 116/223 (52.02%), Postives = 142/223 (63.68%), Query Frame = 1
Query:  136 KQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMGFGGFSGGKR 804
            K V    RR+WDV+ YEKKA+ERL R +          +   +++EF+ A D A GPAGS RA+L  R   + LE    KTQ+I         GG++C+VC+CLLKDS  YLDHINGKKHQR LGFSMRVERS+VG V E+    + R ED  + S A R +A++ YE+R+A  A    XXXXXXXXXXXXXXXXXXXXXX         A MGFGGF GG +
Sbjct:    6 KNVGGAQRRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVRDRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKED--EMSVATRPTAIEAYEQRIAA-AQEEEXXXXXXXXXXXXXXXXXXXXXXMEGMDPDLMAAMGFGGFGGGAK 225          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A1V9YAE1_9STRA (U1-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAE1_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.410e-37
Identity = 84/176 (47.73%), Postives = 115/176 (65.34%), Query Frame = 1
Query:  136 KQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAA 663
            K V+NV RR+WD   + +KA     R + + E    S+KA   +EEFQ AP+GA GP GS RA+LKART++V+LE  + KT V+     ++   GY+CEVC+  LKDS++Y+DHINGK+H R LGFSMRVE+  V +VKE+L+    R  D    S A +  AV+ YE++LAE  A
Sbjct:    5 KGVANVTRRTWDKAFFAQKA---ALRANGLLETESKSTKAVSQREEFQAAPEGAAGPIGSARAFLKARTKQVELEENVGKTVVLKPTDDTAKATGYFCEVCEVTLKDSVSYIDHINGKRHLRRLGFSMRVEKVGVEAVKERLNMASKRKWDP---SVAKKPDAVEAYEKKLAEMDA 174          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A6A3XVT7_9STRA (U1-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XVT7_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.790e-37
Identity = 84/160 (52.50%), Postives = 110/160 (68.75%), Query Frame = 1
Query:   82 VLEHSTMSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKL 561
            + + S+  KG G        V+NV R++WD E YEK A+ R +   E EEA+   +    +K+EFQ A +GA GPAGS RA+LKART K++LE+ +   +V+ S  AS S GGY+CEVC+C LKDS+AYLDHINGKKH R LG+SMRVERS+V  VK +L
Sbjct:    1 MADKSSGRKGAG--------VANVTRQTWDREHYEKLAQLRADGQLEKEEAKKVINS---SKQEFQAANEGAAGPAGSARAFLKARTSKMELETSVGTIKVVKSDDASKS-GGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRL 148          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A067CKA5_SAPPC (U1-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKA5_SAPPC)

HSP 1 Score: 143 bits (360), Expect = 5.420e-37
Identity = 99/227 (43.61%), Postives = 130/227 (57.27%), Query Frame = 1
Query:  124 DLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMGFGGFSGGKR 804
            D   K V+NV RR+WD   + +KA     R + + E    S+K    +EEFQ APDGA GP GS RA+LKART++V+LE  + KT V+  A  +    GY+CEVC+  LKDS++Y+DHINGK+H R LGFSMRVE+  V +VKE+L+    R  D    +   +  AV+ YE++LAE  A           XXXXXX                 AMMGFGGF   K+
Sbjct:    3 DAPKKGVANVTRRTWDKAFFAQKA---ALRANGLLEEEVKSTKQISEREEFQAAPDGAAGPIGSSRAFLKARTKQVELEENVGKT-VVLKADETMKGTGYYCEVCEVTLKDSVSYIDHINGKRHLRRLGFSMRVEKVGVEAVKERLNLASKRKWDP---TVTKKPDAVEAYEKKLAEMDAEANLKKKQKKEXXXXXXEEAPVNVFATEDEEAMMAMMGFGGFQSTKK 222          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: W4GP94_9STRA (U1-type domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GP94_9STRA)

HSP 1 Score: 142 bits (359), Expect = 7.180e-37
Identity = 86/176 (48.86%), Postives = 115/176 (65.34%), Query Frame = 1
Query:  124 DLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLA 651
            D   K V+NV R++WD   +E++A   L     +EE    + K  L +EEFQPA + A GPAGS RA+LKART+KV+L+S + KT VI    A  + G Y+CEVC+  LKDSI+Y+DH+NGKKH R LGFSMRVE+SSV SVK++L+    R  D        +  AV+ YE++LA
Sbjct:    3 DQPKKGVANVTRKTWDKAFFEQQAA--LRASGALEEEEKKTKKIDLAREEFQPAAEDAAGPAGSVRAFLKARTKKVELDSNVGKTTVIKPDDAMRATG-YYCEVCEVTLKDSISYIDHVNGKKHLRKLGFSMRVEQSSVASVKDRLNAAAKRKWDP---EITKKLDAVEAYEKKLA 172          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO)

HSP 1 Score: 143 bits (361), Expect = 1.320e-36
Identity = 80/164 (48.78%), Postives = 110/164 (67.07%), Query Frame = 1
Query:  118 SDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDE---VEEARP---------ASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQG-GYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKL 570
            + +L  KQV+NV RR WDVE YE++AKER  R +E   +EE R          A ++   NKEEFQ AP  A GP GS+RA+L+AR + +DLES++  ++++++  A    G G+ C+VC C LKDS+ YLDHINGKKHQR LGF+MRVERS+   V ++L  +
Sbjct:   10 ASNLNYKQVANVSRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDDSNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSI 173          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCC8_9STRA8.360e-12699.57U1-type domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5KKT3_9PHAE3.170e-5560.78U1-type domain-containing protein n=2 Tax=Ectocarp... [more]
W7U2Z2_9STRA9.710e-4755.03Zinc finger matrin-type protein 2 n=1 Tax=Nannochl... [more]
A0A4D9DA28_9STRA1.890e-4354.44U1-type domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S2WR40_9STRA1.950e-3952.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9YAE1_9STRA1.410e-3747.73U1-type domain-containing protein n=1 Tax=Achlya h... [more]
A0A6A3XVT7_9STRA2.790e-3752.50U1-type domain-containing protein n=2 Tax=Phytopht... [more]
A0A067CKA5_SAPPC5.420e-3743.61U1-type domain-containing protein n=2 Tax=Saproleg... [more]
W4GP94_9STRA7.180e-3748.86U1-type domain-containing protein n=4 Tax=Aphanomy... [more]
A0A1Z5KJY6_FISSO1.320e-3648.78U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistuli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_119contigContig_119:170715..171889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352442|estExt_Genemark1.C_Ctg_1190027
BRITEko00000,ko00001,ko03041
KEGG Pathwayko03040,map03040
KEGG koko:K12848
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Preferred nameSNU23
DescriptionmRNA splicing, via spliceosome
COG categoryA
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4727@1|root,KOG4727@2759|Eukaryota
Evalue3e-58
Seed ortholog2880.D8LQ99
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved C2H2 zinc finger protein
Ec32 orthologEc-26_005600.1
TranscriptId352764
TrackFilteredModels1
ProteinId352442
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352442gene_10617Tribonema minus UTEX_B_3156 geneContig_119 170715..171889 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10617_1exon_10617_1Tribonema minus UTEX_B_3156 exonContig_119 170715..171889 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10617UTR5_10617Tribonema minus UTEX_B_3156 five_prime_UTRContig_119 170715..170813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10617CDS_10617Tribonema minus UTEX_B_3156 CDSContig_119 170814..171521 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10617UTR3_10617Tribonema minus UTEX_B_3156 three_prime_UTRContig_119 171522..171889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352442Trimin1|352442|estExt_Genemark1.C_Ctg_1190027Tribonema minus UTEX_B_3156 polypeptideContig_119 170814..171521 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10617 ID=mRNA_10617|Name=jgi.p|Trimin1|352442|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1175bp|location=Sequence derived from alignment at Contig_119:170715..171889+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATTGAGTCAGCGGTGATTCCTGGAGCTGATCGATAGTGCGAACGCACGA
GTCGTGCACCTCGTCACGTCATTATCACAAGGTACTGGAACACAGCACGA
TGTCTAAAGGAGGGGGTTCAGATGATCTCGGCGACAAGCAGGTCAGCAAT
GTCGTCCGCAGATCCTGGGACGTGGAGTTATATGAGAAGAAAGCCAAGGA
GAGGCTGGAGCGTGGAGACGAAGTAGAGGAAGCGAGGCCTGCCTCCAGCA
AAGCGGCCCTCAACAAGGAGGAATTCCAGCCCGCCCCTGACGGCGCCCAA
GGACCAGCCGGCTCACGACGGGCCTACCTCAAGGCCCGAACGGAGAAGGT
GGATCTGGAGAGCAGACTGCACAAGACCCAGGTCATCACGTCGGCTGCGG
CGAGCAGCAGCCAGGGGGGGTACTGGTGCGAGGTGTGCAAGTGCCTCCTG
AAGGACAGCATCGCGTACCTGGACCACATCAACGGCAAGAAGCACCAGCG
CGCGCTGGGCTTCAGCATGCGCGTGGAGCGGTCCAGCGTGGGCTCCGTCA
AGGAGAAGCTCGACAAGCTGCGCGCGCGGGCGGAGGACGCCGCCAAGGCG
AGCGGCGCGCCGCGCAAGAGCGCCGTGCAGGAGTACGAGGAGCGGCTCGC
GGAGTACGCCGCCGCGGAGGAGAGGAACAGGCAGGAGAGGCGCGAGGCGG
CGGCGGCGGCGAAGGAGGCCGCGGAGCACGAGGAGGAGCAGGACGAGGAG
GCGGCGGCGATAGCGGCCATGATGGGGTTTGGGGGTTTCTCGGGGGGCAA
GCGATAGCCGCGGACGCAGCGCCGGCCGGTCCGGCGCTGTGGCAGTTGCT
GTTAGTTAGGCGCGCGTAGGAGTTTCGTGAAGGCCGTGCTGGCCTGCCTG
CAGCTGCGTGCTTGTTGTTGGTGGCGGGTGACAAGCGCCAAACGCACACT
TGCTTGTGACCGCTAGTGTGACTGTCACTGAGGGCCTTGGCTGCACGGGA
GGTCACTCGGGAGGTTTACTTGGCAATGGTGACAACGGTGGCCCCTGTTG
CGCGGGCAAAGTATGTACATGGAGCAAGTCAACGATGATGTGACCGGTAG
AGGCCTGCAATATGCAGTCTGCATGGATGTCTAGCATACGCGCCTTGCGA
GAATGAACGTGTGCATTCCTGATTA
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protein sequence of jgi.p|Trimin1|352442

>Trimin1|352442|estExt_Genemark1.C_Ctg_1190027 ID=Trimin1|352442|estExt_Genemark1.C_Ctg_1190027|Name=jgi.p|Trimin1|352442|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=236bp
MSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASS
KAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAA
ASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSV
KEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAAEERNRQERREA
AAAAKEAAEHEEEQDEEAAAIAAMMGFGGFSGGKR*
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mRNA from alignment at Contig_119:170715..171889+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10617 ID=mRNA_10617|Name=jgi.p|Trimin1|352442|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1175bp|location=Sequence derived from alignment at Contig_119:170715..171889+ (Tribonema minus UTEX_B_3156 )
GATTGAGTCAGCGGTGATTCCTGGAGCTGATCGATAGTGCGAACGCACGA GTCGTGCACCTCGTCACGTCATTATCACAAGGTACTGGAACACAGCACGA TGTCTAAAGGAGGGGGTTCAGATGATCTCGGCGACAAGCAGGTCAGCAAT GTCGTCCGCAGATCCTGGGACGTGGAGTTATATGAGAAGAAAGCCAAGGA GAGGCTGGAGCGTGGAGACGAAGTAGAGGAAGCGAGGCCTGCCTCCAGCA AAGCGGCCCTCAACAAGGAGGAATTCCAGCCCGCCCCTGACGGCGCCCAA GGACCAGCCGGCTCACGACGGGCCTACCTCAAGGCCCGAACGGAGAAGGT GGATCTGGAGAGCAGACTGCACAAGACCCAGGTCATCACGTCGGCTGCGG CGAGCAGCAGCCAGGGGGGGTACTGGTGCGAGGTGTGCAAGTGCCTCCTG AAGGACAGCATCGCGTACCTGGACCACATCAACGGCAAGAAGCACCAGCG CGCGCTGGGCTTCAGCATGCGCGTGGAGCGGTCCAGCGTGGGCTCCGTCA AGGAGAAGCTCGACAAGCTGCGCGCGCGGGCGGAGGACGCCGCCAAGGCG AGCGGCGCGCCGCGCAAGAGCGCCGTGCAGGAGTACGAGGAGCGGCTCGC GGAGTACGCCGCCGCGGAGGAGAGGAACAGGCAGGAGAGGCGCGAGGCGG CGGCGGCGGCGAAGGAGGCCGCGGAGCACGAGGAGGAGCAGGACGAGGAG GCGGCGGCGATAGCGGCCATGATGGGGTTTGGGGGTTTCTCGGGGGGCAA GCGATAGCCGCGGACGCAGCGCCGGCCGGTCCGGCGCTGTGGCAGTTGCT GTTAGTTAGGCGCGCGTAGGAGTTTCGTGAAGGCCGTGCTGGCCTGCCTG CAGCTGCGTGCTTGTTGTTGGTGGCGGGTGACAAGCGCCAAACGCACACT TGCTTGTGACCGCTAGTGTGACTGTCACTGAGGGCCTTGGCTGCACGGGA GGTCACTCGGGAGGTTTACTTGGCAATGGTGACAACGGTGGCCCCTGTTG CGCGGGCAAAGTATGTACATGGAGCAAGTCAACGATGATGTGACCGGTAG AGGCCTGCAATATGCAGTCTGCATGGATGTCTAGCATACGCGCCTTGCGA GAATGAACGTGTGCATTCCTGATTA
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Coding sequence (CDS) from alignment at Contig_119:170715..171889+

>mRNA_10617 ID=mRNA_10617|Name=jgi.p|Trimin1|352442|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=708bp|location=Sequence derived from alignment at Contig_119:170715..171889+ (Tribonema minus UTEX_B_3156 )
ATGTCTAAAGGAGGGGGTTCAGATGATCTCGGCGACAAGCAGGTCAGCAA
TGTCGTCCGCAGATCCTGGGACGTGGAGTTATATGAGAAGAAAGCCAAGG
AGAGGCTGGAGCGTGGAGACGAAGTAGAGGAAGCGAGGCCTGCCTCCAGC
AAAGCGGCCCTCAACAAGGAGGAATTCCAGCCCGCCCCTGACGGCGCCCA
AGGACCAGCCGGCTCACGACGGGCCTACCTCAAGGCCCGAACGGAGAAGG
TGGATCTGGAGAGCAGACTGCACAAGACCCAGGTCATCACGTCGGCTGCG
GCGAGCAGCAGCCAGGGGGGGTACTGGTGCGAGGTGTGCAAGTGCCTCCT
GAAGGACAGCATCGCGTACCTGGACCACATCAACGGCAAGAAGCACCAGC
GCGCGCTGGGCTTCAGCATGCGCGTGGAGCGGTCCAGCGTGGGCTCCGTC
AAGGAGAAGCTCGACAAGCTGCGCGCGCGGGCGGAGGACGCCGCCAAGGC
GAGCGGCGCGCCGCGCAAGAGCGCCGTGCAGGAGTACGAGGAGCGGCTCG
CGGAGTACGCCGCCGCGGAGGAGAGGAACAGGCAGGAGAGGCGCGAGGCG
GCGGCGGCGGCGAAGGAGGCCGCGGAGCACGAGGAGGAGCAGGACGAGGA
GGCGGCGGCGATAGCGGCCATGATGGGGTTTGGGGGTTTCTCGGGGGGCA
AGCGATAG
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