Trimin1|352442|estExt_Genemark1.C_Ctg_1190027 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352442
Unique NameTrimin1|352442|estExt_Genemark1.C_Ctg_1190027
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length236
Homology
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA)

HSP 1 Score: 372 bits (954), Expect = 1.200e-128
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:    1 MSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGGKR 235
            MSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGGKR
Sbjct:    1 MSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGGKR 235          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 4.550e-58
Identity = 142/232 (61.21%), Postives = 167/232 (71.98%), Query Frame = 0
Query:    7 SDDLGDKQVSNVV-RRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRK-SAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AAMMGFGGFSGGKR 235
            S DLG KQV NV  RR+WD + YE KAKER+E+GD+ +E    +      KEEFQPA  GA GPAGS RAYLK R  KVDL S+L KTQV+T+A+  S QGG++CE+CKC LKDSI YLDHINGKKHQR LG+SMRVERS+V  VK++L   + R ED  + SGA +K SA  E++ R+ E     XXXXXXXXXXXXXXXXXXXXXXXX        AAMMGFGGF GG +
Sbjct:    2 SKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREED--RISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGGSK 231          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.050e-48
Identity = 93/169 (55.03%), Postives = 124/169 (73.37%), Query Frame = 0
Query:   17 NVVRRSWDVELYEKKAKERLER--GDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERL 183
            NV RR+WD+E +EK AKERLE+    +VE+ +P   +    +EEFQ A  GA GP GS+RAYLK R   + LE ++ K QV+T ++A   QGGYWC++C+CLLKDS+AYLDHINGKKHQ+ALG+SMRVER  V  VKE+L+ L+ R ED  K +G PR+SA+  Y+++L
Sbjct:   17 NVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVR---KREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRR-EDEKKKAG-PRESAIDAYQKKL 180          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A4D9DA28_9STRA (U1-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA28_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.950e-45
Identity = 92/169 (54.44%), Postives = 123/169 (72.78%), Query Frame = 0
Query:   17 NVVRRSWDVELYEKKAKERLER--GDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERL 183
            NV RR+WD+E +EK AKERLE+    +VE+ +P   +    +EEFQ A  GA GP GS+RAYLK R   + LE ++ K QV+T ++A   QGGYWC++C+CLLKDS+AYLDHINGKKHQ+ALG+SMRVER  V  VKE+L+ L+ R ++  KA   PR+SA+  YE++L
Sbjct:   17 NVERRTWDLEHFEKIAKERLEKEASGDVEKKKPGFVR---KREEFQAAETGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKRKAG--PRESAIDAYEKKL 180          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.020e-41
Identity = 116/223 (52.02%), Postives = 142/223 (63.68%), Query Frame = 0
Query:   13 KQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGGKR 235
            K V    RR+WDV+ YEKKA+ERL R +          +   +++EF+ A D A GPAGS RA+L  R   + LE    KTQ+I         GG++C+VC+CLLKDS  YLDHINGKKHQR LGFSMRVERS+VG V E+    + R ED  + S A R +A++ YE+R+A  A    XXXXXXXXXXXXXXXXXXXXXX         A MGFGGF GG +
Sbjct:    6 KNVGGAQRRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVRDRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKED--EMSVATRPTAIEAYEQRIAA-AQEEEXXXXXXXXXXXXXXXXXXXXXXMEGMDPDLMAAMGFGGFGGGAK 225          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A1V9YAE1_9STRA (U1-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAE1_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.270e-39
Identity = 84/176 (47.73%), Postives = 115/176 (65.34%), Query Frame = 0
Query:   13 KQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAA 188
            K V+NV RR+WD   + +KA     R + + E    S+KA   +EEFQ AP+GA GP GS RA+LKART++V+LE  + KT V+     ++   GY+CEVC+  LKDS++Y+DHINGK+H R LGFSMRVE+  V +VKE+L+    R  D    S A +  AV+ YE++LAE  A
Sbjct:    5 KGVANVTRRTWDKAFFAQKA---ALRANGLLETESKSTKAVSQREEFQAAPEGAAGPIGSARAFLKARTKQVELEENVGKTVVLKPTDDTAKATGYFCEVCEVTLKDSVSYIDHINGKRHLRRLGFSMRVEKVGVEAVKERLNMASKRKWDP---SVAKKPDAVEAYEKKLAEMDA 174          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A6A3XVT7_9STRA (U1-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XVT7_9STRA)

HSP 1 Score: 144 bits (363), Expect = 6.340e-39
Identity = 80/140 (57.14%), Postives = 103/140 (73.57%), Query Frame = 0
Query:   15 VSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKL 154
            V+NV R++WD E YEK A+ R +   E EEA+   +    +K+EFQ A +GA GPAGS RA+LKART K++LE+ +   +V+ S  AS S GGY+CEVC+C LKDS+AYLDHINGKKH R LG+SMRVERS+V  VK +L
Sbjct:   13 VANVTRQTWDREHYEKLAQLRADGQLEKEEAKKVINS---SKQEFQAANEGAAGPAGSARAFLKARTSKMELETSVGTIKVVKSDDASKS-GGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRL 148          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: A0A067CKA5_SAPPC (U1-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKA5_SAPPC)

HSP 1 Score: 143 bits (361), Expect = 6.390e-39
Identity = 99/227 (43.61%), Postives = 130/227 (57.27%), Query Frame = 0
Query:    9 DLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGGKR 235
            D   K V+NV RR+WD   + +KA     R + + E    S+K    +EEFQ APDGA GP GS RA+LKART++V+LE  + KT V+  A  +    GY+CEVC+  LKDS++Y+DHINGK+H R LGFSMRVE+  V +VKE+L+    R  D    +   +  AV+ YE++LAE  A           XXXXXX                 AMMGFGGF   K+
Sbjct:    3 DAPKKGVANVTRRTWDKAFFAQKA---ALRANGLLEEEVKSTKQISEREEFQAAPDGAAGPIGSSRAFLKARTKQVELEENVGKT-VVLKADETMKGTGYYCEVCEVTLKDSVSYIDHINGKRHLRRLGFSMRVEKVGVEAVKERLNLASKRKWDP---TVTKKPDAVEAYEKKLAEMDAEANLKKKQKKEXXXXXXEEAPVNVFATEDEEAMMAMMGFGGFQSTKK 222          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: W4GP94_9STRA (U1-type domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GP94_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.400e-38
Identity = 85/172 (49.42%), Postives = 114/172 (66.28%), Query Frame = 0
Query:   13 KQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERLA 184
            K V+NV R++WD   +E++A   L     +EE    + K  L +EEFQPA + A GPAGS RA+LKART+KV+L+S + KT VI    A  + G Y+CEVC+  LKDSI+Y+DH+NGKKH R LGFSMRVE+SSV SVK++L+    R  D        +  AV+ YE++LA
Sbjct:    7 KGVANVTRKTWDKAFFEQQAA--LRASGALEEEEKKTKKIDLAREEFQPAAEDAAGPAGSVRAFLKARTKKVELDSNVGKTTVIKPDDAMRATG-YYCEVCEVTLKDSISYIDHVNGKKHLRKLGFSMRVEQSSVASVKDRLNAAAKRKWDP---EITKKLDAVEAYEKKLA 172          
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Match: W2PLF3_PHYPN (U1-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLF3_PHYPN)

HSP 1 Score: 142 bits (357), Expect = 4.250e-38
Identity = 86/169 (50.89%), Postives = 110/169 (65.09%), Query Frame = 0
Query:   15 VSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERL 183
            V+NV R++WD   YEK A+ R E   E EE +         KEEFQ A +GA GPAGS RA+LKART K+ LES +   +V+ S   S + GGY+CEVC+C LKDS+AYLDHINGKKH R LG+SMRVERS+V  VK +L     R  D   A    +  A+++YE++L
Sbjct:   13 VANVTRQTWDRAHYEKLAQLRAEGKLEKEETKKVIKS---TKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVKSDDVSKN-GGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKRKWDPLMAK---KLDAMEDYEKKL 174          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352442 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCC8_9STRA1.200e-128100.00U1-type domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5KKT3_9PHAE4.550e-5861.21U1-type domain-containing protein n=2 Tax=Ectocarp... [more]
W7U2Z2_9STRA1.050e-4855.03Zinc finger matrin-type protein 2 n=1 Tax=Nannochl... [more]
A0A4D9DA28_9STRA1.950e-4554.44U1-type domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S2WR40_9STRA1.020e-4152.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9YAE1_9STRA2.270e-3947.73U1-type domain-containing protein n=1 Tax=Achlya h... [more]
A0A6A3XVT7_9STRA6.340e-3957.14U1-type domain-containing protein n=2 Tax=Phytopht... [more]
A0A067CKA5_SAPPC6.390e-3943.61U1-type domain-containing protein n=2 Tax=Saproleg... [more]
W4GP94_9STRA2.400e-3849.42U1-type domain-containing protein n=4 Tax=Aphanomy... [more]
W2PLF3_PHYPN4.250e-3850.89U1-type domain-containing protein n=11 Tax=Phytoph... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 147..167
NoneNo IPR availableCOILSCoilCoilcoord: 172..214
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 98..137
e-value: 4.9E-7
score: 31.2
NoneNo IPR availablePFAMPF12874zf-metcoord: 108..132
e-value: 1.7E-6
score: 28.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..51
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 105..139
e-value: 4.4E-8
score: 42.9
IPR040107U4/U6.U5 small nuclear ribonucleoprotein component Snu23PANTHERPTHR45986ZINC FINGER MATRIN-TYPE PROTEIN 2coord: 3..235
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 103..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_119contigContig_119:170814..171521 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352442mRNA_10617Tribonema minus UTEX_B_3156 mRNAContig_119 170715..171889 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352442|estExt_Genemark1.C_Ctg_1190027 ID=Trimin1|352442|estExt_Genemark1.C_Ctg_1190027|Name=jgi.p|Trimin1|352442|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=236bp
MSKGGGSDDLGDKQVSNVVRRSWDVELYEKKAKERLERGDEVEEARPASS
KAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAA
ASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSV
KEKLDKLRARAEDAAKASGAPRKSAVQEYEERLAEYAAAEERNRQERREA
AAAAKEAAEHEEEQDEEAAAIAAMMGFGGFSGGKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR040107Snu23
IPR036236Znf_C2H2_sf