Homology
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match:
A0A835ZLM4_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLM4_9STRA)
HSP 1 Score: 587 bits (1512), Expect = 8.180e-211
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 3
Query: 33 MLRFGAAFTAQRATACLGLTLAATAAYASQSFATSTQTTVALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
MLRFGAAFTAQRATACLGLTLAATAAYASQSFATSTQTTVALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF
Sbjct: 1 MLRFGAAFTAQRATACLGLTLAATAAYASQSFATSTQTTVALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 293
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match:
A0A836C9R3_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R3_9STRA)
HSP 1 Score: 345 bits (885), Expect = 1.850e-115
Identity = 163/254 (64.17%), Postives = 198/254 (77.95%), Query Frame = 3
Query: 153 ALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTV-RPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
AL P+EWR+F V E+ LSHDTK F + LPS +HE G+ TASCL+V+GTGLDG V RPYTPT+LN T GHF+LVIK+Y +G VSSYMHGL GD + VKGPFPK+K+ PNMK+ IG+IAGGTGITPMYQCI ELL+A DAT + LL+GN+TP DILLK+ELDALA +PRF +VY V + W G G+I + ++Y+PPPS D+MVFVCGPPPLMK+ISGDK DKSQG ++G LK G+TE VYKF
Sbjct: 38 ALDPQEWRQFTVKEITPLSHDTKKFTVALPSEEHELGMVTASCLMVEGTGLDGTSQVARPYTPTSLNGTKGHFELVIKKYDKGQVSSYMHGLSVGDAIKVKGPFPKIKLDPNMKKRIGLIAGGTGITPMYQCIQELLEADGDATEMVLLYGNKTPKDILLKSELDALATKYPRFSVVYKVGEATDGWTGPVGHIGLEDCKQYLPPPSDDHMVFVCGPPPLMKAISGDKGPDKSQGAVDGVLKELGYTETQVYKF 291
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match:
A0A6H5JG59_9PHAE (NADH-cytochrome b5 reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG59_9PHAE)
HSP 1 Score: 311 bits (796), Expect = 1.110e-101
Identity = 144/253 (56.92%), Postives = 190/253 (75.10%), Query Frame = 3
Query: 153 ALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
A SPKE+R+FP+ E+ ++H+ + F+I LPS +H G++TASC++V+G G DG VRPYTPTT N T GHFDLVIK YPEGNVSS++ LK GD + VKGPFPK +PN+K+ IGMIAGGTGITPM Q + ELL +D T +TLLF N T +DI+LKAE+D LAA H F +VY+VDK + W G +G++ A+ I+ ++P PS D+++FVCGPP +M +ISG K +DKSQG + G LKA G+T +MVYKF
Sbjct: 59 AFSPKEFRDFPLREIEDMTHNVRRFRIGLPSEEHVMGMKTASCIVVKGKGKDGSVAVRPYTPTTTNDTKGHFDLVIKVYPEGNVSSHLFSLKVGDTVAVKGPFPKFDYSPNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKVTLLFANVTAADIMLKAEIDKLAAEHDNFDVVYVVDKAEEGWTGATGHVNASLIETHLPKPSGDSVIFVCGPPGMMNAISGPKNEDKSQGEIGGVLKALGYTSDMVYKF 311
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match:
A0A7S4CVQ4_9EUGL (NADH-cytochrome b5 reductase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CVQ4_9EUGL)
HSP 1 Score: 279 bits (713), Expect = 2.840e-89
Identity = 130/254 (51.18%), Postives = 181/254 (71.26%), Query Frame = 3
Query: 153 ALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQ-GTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
A +PKE+R+F + E T+SHDT++F+ LP+ E GL TASC++ + TG +G+ +RPYTPTTLN T GHFDLVIK+YP+ ++ ++ LKPGD+L VKGP K + PN ++IGMIAGGTGITPMYQ E+L DD T I L++GN+T DILL+ ELDALA HP F++ Y +D P W+G G++T + + P +++ V+VCGP P+MK++SG KAKD SQG ++G LK G+T++MV+KF
Sbjct: 48 AFNPKEFRKFKLLESQTISHDTRLFRFALPADTPEMGLPTASCIVTRYATGNEGEYVIRPYTPTTLNDTKGHFDLVIKKYPDAKMAGHIFSLKPGDELEVKGPIIKQRYVPNKYKHIGMIAGGTGITPMYQVAQEVLKNPDDKTEIDLIYGNKTEDDILLRKELDALAKKHPNFRVHYTLDSPGWMWRGDKGFVTPAMVSSHFPGAKSNSYVYVCGPMPMMKAVSGGKAKDYSQGEVDGVLKELGYTKDMVFKF 301
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match:
A0A7N0ZSQ8_KALFE (NADH-cytochrome b5 reductase n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0ZSQ8_KALFE)
HSP 1 Score: 272 bits (696), Expect = 2.640e-86
Identity = 135/260 (51.92%), Postives = 179/260 (68.85%), Query Frame = 3
Query: 150 VALSPKEWREFPVSEVHTLSHDTKMFKIQL-PSSKHETGLETASCLLVQ---GTGLDGKP--TVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
VAL+P +W +F + + T+SH+TK+F+ PSSK GL+ ASC+L + G +GKP VRPYTP + G+FDL+IK YPEG +S + LKPGD L VKGP KL+ TPNMK++IGMIAGG+GITPM Q + +++ DD T ++L++GN +P DILLK +LD LA THP FK+ Y VD+P +WKG GYI+ K +P P D ++ VCGPP +M ISGDKA+D+SQG L G LK G+T +MVYKF
Sbjct: 73 VALNPNKWLDFKLEDTATVSHNTKLFRFSFDPSSK--LGLDVASCILTRAPLGQDTEGKPKYVVRPYTPISPTDAKGYFDLLIKIYPEGKMSQHFASLKPGDVLQVKGPIEKLRYTPNMKKHIGMIAGGSGITPMLQVVEAIVNNPDDITQVSLIYGNVSPDDILLKQKLDLLATTHPNFKVFYTVDRPTDNWKGGKGYISKEMAVKGLPHPGDDTLILVCGPPGMMNHISGDKAQDRSQGELTGILKELGYTADMVYKF 330
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match:
A0A6S9JGT0_HETAK (NADH-cytochrome b5 reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JGT0_HETAK)
HSP 1 Score: 271 bits (692), Expect = 3.250e-86
Identity = 130/253 (51.38%), Postives = 169/253 (66.80%), Query Frame = 3
Query: 153 ALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
A SPKEWR F + +V L+HDT +F+ LP+++HE G++T+SC++VQG G RPYTPT+ N+ G FDL++K YP GNVSSY+HGLK GD L VKGP+ KL+ PNM + IGMIAGG+GITPM Q E+L DD T I+L+F N T DI+ KA LD +AA + F++ Y V + W+ G A I+K MP P A MVFVCGP +M ++ G K K+ +QG L+G LK GFT E VYKF
Sbjct: 41 AFSPKEWRSFKLIQVRELTHDTSLFRFALPTTQHEMGMKTSSCIMVQGETRTGSMVARPYTPTSTNEQKGFFDLIVKNYPNGNVSSYIHGLKIGDNLNVKGPYMKLEYKPNMFKRIGMIAGGSGITPMIQLCREILSNPDDTTEISLIFANNTEGDIMQKAWLDQMAAQYHNFRVYYTVRDAPAGWRQGQGVCDAEMIEKKMPAPEAGTMVFVCGPDGMMDAVCGPKGKNYTQGELQGLLKERGFTAEQVYKF 293
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match:
A0A7S2V2T1_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2T1_9STRA)
HSP 1 Score: 271 bits (692), Expect = 3.460e-86
Identity = 130/255 (50.98%), Postives = 171/255 (67.06%), Query Frame = 3
Query: 150 VALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDG-KPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
VA S KEWR FP+ ++ L+ +T +F+ LPS +HE GL ASC+ V+ +G KP +RPYTPTT N G+FDL++K YP G VSSY H LK GD ++VKGP+ KL+ PNM + IGMIAGGTGITPM Q + +L D T + L+F N T DI+ K LD +A + F + Y+V KP SWKG G++ + +++ +P P MVFVCGPP +M+SISGDKA+DKSQG + G LK G+T MVYKF
Sbjct: 41 VAFSAKEWRSFPLVQIRELTPNTSLFRFNLPSQEHEMGLSVASCIEVKAPPKEGGKPMIRPYTPTTNNDVKGYFDLIVKDYPNGKVSSYFHNLKIGDSILVKGPYDKLQYKPNMFKRIGMIAGGTGITPMLQMLKVILSNPKDKTEVHLVFANNTEDDIMQKNVLDQMAVEYHNFHVHYVVAKPRPSWKGGVGFVDLDTVERKIPAPEEGTMVFVCGPPGMMESISGDKAEDKSQGEVSGVLKERGYTSGMVYKF 295
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match:
I1HCH9_BRADI (NADH-cytochrome b5 reductase n=20 Tax=Pooideae TaxID=147368 RepID=I1HCH9_BRADI)
HSP 1 Score: 271 bits (692), Expect = 5.800e-86
Identity = 135/260 (51.92%), Postives = 183/260 (70.38%), Query Frame = 3
Query: 150 VALSPKEWREFPVSEVHTLSHDTKMFKIQL-PSSKHETGLETASCLLVQ---GTGLDG--KPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
VAL+P++W EF + E T+SHD+++F+ PS+K GL+ ASCL+ + G ++G K +RPYTP + + GHFDL+IK YP+G +S Y LKPGD + VKGP KL+ +PNMKR IGMIAGGTGITPM Q + +L DD T ++L++ N +P DILLK ELD LA+++P FK+ Y VDKP S W+G +GYI+ + + K +P P D+++ VCGPP LM ISGDKAKD+SQG + G LK G+T +MVYKF
Sbjct: 54 VALNPEKWLEFKLQEKATVSHDSQLFRFSFDPSTK--LGLDVASCLVTRAPIGQEVEGRKKYVIRPYTPISDPDSKGHFDLLIKVYPDGQMSQYFANLKPGDVVEVKGPIEKLRYSPNMKRQIGMIAGGTGITPMLQVVRAILKNPDDNTQVSLIYANVSPDDILLKRELDRLASSYPNFKVFYTVDKPSSDWRGGAGYISKDMVLKGLPGPGEDSLILVCGPPGLMNHISGDKAKDRSQGEVSGLLKDLGYTADMVYKF 311
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match:
A0A2I0WGT6_9ASPA (NADH-cytochrome b5 reductase n=3 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0WGT6_9ASPA)
HSP 1 Score: 270 bits (689), Expect = 2.480e-85
Identity = 135/260 (51.92%), Postives = 184/260 (70.77%), Query Frame = 3
Query: 150 VALSPKEWREFPVSEVHTLSHDTKMFKIQL-PSSKHETGLETASCLLVQ---GTGLDG--KPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
VAL+P++W EF + E +SH+T +++ P++K GL+ ASC++ + G +G K +RPYTP + ++ G+FDL+IK YPEG +S + LKPGD L VKGP KL+ +PNMK+ +GM+AGGTGITPM Q I +L DD T ++L++ N +P DILLKAELD LAA++P FK+ Y VDKP SW+G +G+I+++ I K +P PS D ++ VCGPP LM ISGDKAKD+SQG L G LK G+TEEMVYKF
Sbjct: 67 VALNPEKWLEFKLQETARVSHNTNLYRFSFDPTAK--LGLDVASCIITRAAIGEESEGRQKYVIRPYTPISDPESKGYFDLLIKVYPEGKMSQHFAQLKPGDVLEVKGPIEKLRYSPNMKKKLGMVAGGTGITPMVQVIKAILKNPDDKTQVSLIYANVSPDDILLKAELDRLAASYPNFKVFYTVDKPSKSWRGGAGFISSDMILKGLPGPSEDTLILVCGPPGLMNHISGDKAKDRSQGELSGLLKDLGYTEEMVYKF 324
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match:
A0A0K9R212_SPIOL (NADH-cytochrome b5 reductase n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9R212_SPIOL)
HSP 1 Score: 268 bits (686), Expect = 7.040e-85
Identity = 134/263 (50.95%), Postives = 176/263 (66.92%), Query Frame = 3
Query: 138 TQTTVALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQ---GTGLDGKP--TVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
TQ + L+PKEW EF + E +SH+TK+F+ S E GL+ ASC+L + G +GK +RPYTP + + G+FDL+IK YPEG +S + LKPGD + VKGP KL+ TPNMK++IGMIAGGTG+TPM Q + +L SDD T ++L++ N +P DILLK +LD LA HP FK+ Y VD P W G GY++ + + K +P P D ++ VCGPP +M+ ISGDKAKD SQG L G LK G+TEEMVYKF
Sbjct: 63 TQKKIVLNPKEWLEFKLHETANVSHNTKLFRFSFDSDA-ELGLDIASCILTRAPTGKNDEGKTKYVIRPYTPISDPEAKGYFDLMIKMYPEGKMSQHFAKLKPGDVVEVKGPIEKLRYTPNMKKHIGMIAGGTGVTPMLQVVEAILKNSDDKTQVSLVYANVSPDDILLKQKLDILATRHPNFKVFYTVDNPSKEWIGGVGYVSKDMVTKGLPGPGDDTLIMVCGPPGMMQHISGDKAKDYSQGELTGILKELGYTEEMVYKF 324
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 8.18e-211 / Id = 100.00 Expect = 1.85e-115 / Id = 64.17 Expect = 1.11e-101 / Id = 56.92 Expect = 2.84e-89 / Id = 51.18 Expect = 2.64e-86 / Id = 51.92 Expect = 3.25e-86 / Id = 51.38 Expect = 3.46e-86 / Id = 50.98 Expect = 5.80e-86 / Id = 51.92 Expect = 2.48e-85 / Id = 51.92 Expect = 7.04e-85 / Id = 50.95 Sequence A0A835ZLM4_9STRA A0A836C9R3_9STRA A0A6H5JG59_9PHAE A0A7S4CVQ4_9EUGL A0A7N0ZSQ8_KALFE A0A6S9JGT0_HETAK A0A7S2V2T1_9STRA I1HCH9_BRADI A0A2I0WGT6_9ASPA A0A0K9R212_SPIOL Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
ProteomeId Trimin1|11044|CE11043_185 BRITE ko00000,ko00001,ko01000 KEGG Reaction R00100 KEGG Pathway ko00520,map00520 KEGG ko ko:K00326 EC 1.6.2.2 GOs GO:0003674,GO:0003824,GO:0004128,GO:0005488,GO:0005507,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005794,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009505,GO:0009628,GO:0009651,GO:0012505,GO:0016491,GO:0016651,GO:0016653,GO:0030312,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0055114,GO:0070013,GO:0071944 Description belongs to the flavoprotein pyridine nucleotide cytochrome reductase family COG category C Max annot lvl 35493|Streptophyta EggNOG OGs COG0543@1|root,KOG0534@2759|Eukaryota,37RUI@33090|Viridiplantae,3GEY2@35493|Streptophyta,3KXEZ@4447|Liliopsida,3IA4S@38820|Poales Evalue 1.02e-87 Seed ortholog 15368.BRADI2G04610.1 Hectar predicted targeting category chloroplast TranscriptId 11366 Track FilteredModels1 ProteinId 11044
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA
>mRNA_10599 ID=mRNA_10599|Name=jgi.p|Trimin1|11044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1046bp|location=Sequence derived from alignment at Contig_119:50570..57407- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
CACACACCTCGAGTGCTTCGCAAGACAGCAGCATGCTTCGATTCGGCGCA back to top protein sequence of jgi.p|Trimin1|11044
>Trimin1|11044|CE11043_185 ID=Trimin1|11044|CE11043_185|Name=jgi.p|Trimin1|11044|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=294bp
MLRFGAAFTAQRATACLGLTLAATAAYASQSFATSTQTTVALSPKEWREF back to top mRNA from alignment at Contig_119:50570..57407-
Legend: exon five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10599 ID=mRNA_10599|Name=jgi.p|Trimin1|11044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6838bp|location=Sequence derived from alignment at Contig_119:50570..57407- (Tribonema minus UTEX_B_3156 )CACACACCTCGAGTGCTTCGCAAGACAGCAGC ATGCTTCGATTCGGCGCA
GCTTTCACTGCTCAGAGGGCCACGGCATGCCTGGGACTCACGCTAGCCGC
GACGGCCGCTTATGCAAGTCAGTCTTTTGCGACTTCGACACAGACCACTG
TG GCCCTGAGCCCAAAGGAGTGGCGGGAGTTTCCTGTGAGCG
AGGTGCACACGCTGAGCCATGACACAAAGATGTTCAAAATACAGCTGCCT
TCCTCCAAACATG AAACGGGGCTCGAAACGGCGTCGTG
CCTGCTGGTTCAGGGCACGGGGCTCGACGGCAAGCCCACCGTGCGGCCGT
ACACCCCCACAACGCTCAACAAGACGCTGGGCCACTTTGACCTGGTCATC
AAGCGCTACCCGGAGGGCAAT GTCTCGAGCTACATGCACGGCCTCAAGCCCGGCGACAAGCTCATGGTC
AAG GGGCCCTTCCCCAAG CTGAAGGTGACGCC
GAACATGAAGCGCAACATCGGCATGATCGCGGGCGGCACGGGCATCACGC
CCATGTACCAGTGCATCCTGGAGCTCCTCGACGCGTCCGACGACGCGACC
AACATCACGCTGCTGTTCGGCAACCGCACGCCGTCCGACATCCTGCTCAA
GGCGGAGCTGGACGCGCTCGCCGCCACGCACCCGCGCTTCAAGCTCGTGT
ACATCGTCGACAAGCCCGACAGCAGCTGGAAG GGCCTCTCCGGCTACATCACAGCGAACGAGATCCAG AAATACATGCCGCCGCCGTCAGCCGACAA
CATGGTGTTTGTGTGCGGGCCACCGCCGCTCATGAAG TCCATCTCCGGCGACAAGGCCAAGGACAAGTCGCAGGGGCCGC
TCGAGGGCGCGCTCAAGGCGTGCGGCTTCACAGAGGAAATGGTCTACAAG
TTCTAG AGGCGCGGCTCGTGATGAGCGCTGCTGCTGCTGCTGCTGCTGCC
ATGGCCACGCGCCGCGGCGCGGCGCGGCGCTTTGCAGCAGCATATTTACG
CCAGCAATGTCGTTATTGCACCTCCTTAATAGTGAGCG back to top Coding sequence (CDS) from alignment at Contig_119:50570..57407-
>mRNA_10599 ID=mRNA_10599|Name=jgi.p|Trimin1|11044|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=882bp|location=Sequence derived from alignment at Contig_119:50570..57407- (Tribonema minus UTEX_B_3156 ) back to top