mRNA_10599 (mRNA) Tribonema minus UTEX_B_3156
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A835ZLM4_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLM4_9STRA) HSP 1 Score: 587 bits (1512), Expect = 8.180e-211 Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 3 Query: 33 MLRFGAAFTAQRATACLGLTLAATAAYASQSFATSTQTTVALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
MLRFGAAFTAQRATACLGLTLAATAAYASQSFATSTQTTVALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF
Sbjct: 1 MLRFGAAFTAQRATACLGLTLAATAAYASQSFATSTQTTVALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 293
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A836C9R3_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R3_9STRA) HSP 1 Score: 345 bits (885), Expect = 1.850e-115 Identity = 163/254 (64.17%), Postives = 198/254 (77.95%), Query Frame = 3 Query: 153 ALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTV-RPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
AL P+EWR+F V E+ LSHDTK F + LPS +HE G+ TASCL+V+GTGLDG V RPYTPT+LN T GHF+LVIK+Y +G VSSYMHGL GD + VKGPFPK+K+ PNMK+ IG+IAGGTGITPMYQCI ELL+A DAT + LL+GN+TP DILLK+ELDALA +PRF +VY V + W G G+I + ++Y+PPPS D+MVFVCGPPPLMK+ISGDK DKSQG ++G LK G+TE VYKF
Sbjct: 38 ALDPQEWRQFTVKEITPLSHDTKKFTVALPSEEHELGMVTASCLMVEGTGLDGTSQVARPYTPTSLNGTKGHFELVIKKYDKGQVSSYMHGLSVGDAIKVKGPFPKIKLDPNMKKRIGLIAGGTGITPMYQCIQELLEADGDATEMVLLYGNKTPKDILLKSELDALATKYPRFSVVYKVGEATDGWTGPVGHIGLEDCKQYLPPPSDDHMVFVCGPPPLMKAISGDKGPDKSQGAVDGVLKELGYTETQVYKF 291
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A6H5JG59_9PHAE (NADH-cytochrome b5 reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG59_9PHAE) HSP 1 Score: 311 bits (796), Expect = 1.110e-101 Identity = 144/253 (56.92%), Postives = 190/253 (75.10%), Query Frame = 3 Query: 153 ALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
A SPKE+R+FP+ E+ ++H+ + F+I LPS +H G++TASC++V+G G DG VRPYTPTT N T GHFDLVIK YPEGNVSS++ LK GD + VKGPFPK +PN+K+ IGMIAGGTGITPM Q + ELL +D T +TLLF N T +DI+LKAE+D LAA H F +VY+VDK + W G +G++ A+ I+ ++P PS D+++FVCGPP +M +ISG K +DKSQG + G LKA G+T +MVYKF
Sbjct: 59 AFSPKEFRDFPLREIEDMTHNVRRFRIGLPSEEHVMGMKTASCIVVKGKGKDGSVAVRPYTPTTTNDTKGHFDLVIKVYPEGNVSSHLFSLKVGDTVAVKGPFPKFDYSPNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKVTLLFANVTAADIMLKAEIDKLAAEHDNFDVVYVVDKAEEGWTGATGHVNASLIETHLPKPSGDSVIFVCGPPGMMNAISGPKNEDKSQGEIGGVLKALGYTSDMVYKF 311
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A7S4CVQ4_9EUGL (NADH-cytochrome b5 reductase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CVQ4_9EUGL) HSP 1 Score: 279 bits (713), Expect = 2.840e-89 Identity = 130/254 (51.18%), Postives = 181/254 (71.26%), Query Frame = 3 Query: 153 ALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQ-GTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
A +PKE+R+F + E T+SHDT++F+ LP+ E GL TASC++ + TG +G+ +RPYTPTTLN T GHFDLVIK+YP+ ++ ++ LKPGD+L VKGP K + PN ++IGMIAGGTGITPMYQ E+L DD T I L++GN+T DILL+ ELDALA HP F++ Y +D P W+G G++T + + P +++ V+VCGP P+MK++SG KAKD SQG ++G LK G+T++MV+KF
Sbjct: 48 AFNPKEFRKFKLLESQTISHDTRLFRFALPADTPEMGLPTASCIVTRYATGNEGEYVIRPYTPTTLNDTKGHFDLVIKKYPDAKMAGHIFSLKPGDELEVKGPIIKQRYVPNKYKHIGMIAGGTGITPMYQVAQEVLKNPDDKTEIDLIYGNKTEDDILLRKELDALAKKHPNFRVHYTLDSPGWMWRGDKGFVTPAMVSSHFPGAKSNSYVYVCGPMPMMKAVSGGKAKDYSQGEVDGVLKELGYTKDMVFKF 301
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A7N0ZSQ8_KALFE (NADH-cytochrome b5 reductase n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0ZSQ8_KALFE) HSP 1 Score: 272 bits (696), Expect = 2.640e-86 Identity = 135/260 (51.92%), Postives = 179/260 (68.85%), Query Frame = 3 Query: 150 VALSPKEWREFPVSEVHTLSHDTKMFKIQL-PSSKHETGLETASCLLVQ---GTGLDGKP--TVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
VAL+P +W +F + + T+SH+TK+F+ PSSK GL+ ASC+L + G +GKP VRPYTP + G+FDL+IK YPEG +S + LKPGD L VKGP KL+ TPNMK++IGMIAGG+GITPM Q + +++ DD T ++L++GN +P DILLK +LD LA THP FK+ Y VD+P +WKG GYI+ K +P P D ++ VCGPP +M ISGDKA+D+SQG L G LK G+T +MVYKF
Sbjct: 73 VALNPNKWLDFKLEDTATVSHNTKLFRFSFDPSSK--LGLDVASCILTRAPLGQDTEGKPKYVVRPYTPISPTDAKGYFDLLIKIYPEGKMSQHFASLKPGDVLQVKGPIEKLRYTPNMKKHIGMIAGGSGITPMLQVVEAIVNNPDDITQVSLIYGNVSPDDILLKQKLDLLATTHPNFKVFYTVDRPTDNWKGGKGYISKEMAVKGLPHPGDDTLILVCGPPGMMNHISGDKAQDRSQGELTGILKELGYTADMVYKF 330
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A6S9JGT0_HETAK (NADH-cytochrome b5 reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JGT0_HETAK) HSP 1 Score: 271 bits (692), Expect = 3.250e-86 Identity = 130/253 (51.38%), Postives = 169/253 (66.80%), Query Frame = 3 Query: 153 ALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
A SPKEWR F + +V L+HDT +F+ LP+++HE G++T+SC++VQG G RPYTPT+ N+ G FDL++K YP GNVSSY+HGLK GD L VKGP+ KL+ PNM + IGMIAGG+GITPM Q E+L DD T I+L+F N T DI+ KA LD +AA + F++ Y V + W+ G A I+K MP P A MVFVCGP +M ++ G K K+ +QG L+G LK GFT E VYKF
Sbjct: 41 AFSPKEWRSFKLIQVRELTHDTSLFRFALPTTQHEMGMKTSSCIMVQGETRTGSMVARPYTPTSTNEQKGFFDLIVKNYPNGNVSSYIHGLKIGDNLNVKGPYMKLEYKPNMFKRIGMIAGGSGITPMIQLCREILSNPDDTTEISLIFANNTEGDIMQKAWLDQMAAQYHNFRVYYTVRDAPAGWRQGQGVCDAEMIEKKMPAPEAGTMVFVCGPDGMMDAVCGPKGKNYTQGELQGLLKERGFTAEQVYKF 293
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A7S2V2T1_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2T1_9STRA) HSP 1 Score: 271 bits (692), Expect = 3.460e-86 Identity = 130/255 (50.98%), Postives = 171/255 (67.06%), Query Frame = 3 Query: 150 VALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDG-KPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
VA S KEWR FP+ ++ L+ +T +F+ LPS +HE GL ASC+ V+ +G KP +RPYTPTT N G+FDL++K YP G VSSY H LK GD ++VKGP+ KL+ PNM + IGMIAGGTGITPM Q + +L D T + L+F N T DI+ K LD +A + F + Y+V KP SWKG G++ + +++ +P P MVFVCGPP +M+SISGDKA+DKSQG + G LK G+T MVYKF
Sbjct: 41 VAFSAKEWRSFPLVQIRELTPNTSLFRFNLPSQEHEMGLSVASCIEVKAPPKEGGKPMIRPYTPTTNNDVKGYFDLIVKDYPNGKVSSYFHNLKIGDSILVKGPYDKLQYKPNMFKRIGMIAGGTGITPMLQMLKVILSNPKDKTEVHLVFANNTEDDIMQKNVLDQMAVEYHNFHVHYVVAKPRPSWKGGVGFVDLDTVERKIPAPEEGTMVFVCGPPGMMESISGDKAEDKSQGEVSGVLKERGYTSGMVYKF 295
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: I1HCH9_BRADI (NADH-cytochrome b5 reductase n=20 Tax=Pooideae TaxID=147368 RepID=I1HCH9_BRADI) HSP 1 Score: 271 bits (692), Expect = 5.800e-86 Identity = 135/260 (51.92%), Postives = 183/260 (70.38%), Query Frame = 3 Query: 150 VALSPKEWREFPVSEVHTLSHDTKMFKIQL-PSSKHETGLETASCLLVQ---GTGLDG--KPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
VAL+P++W EF + E T+SHD+++F+ PS+K GL+ ASCL+ + G ++G K +RPYTP + + GHFDL+IK YP+G +S Y LKPGD + VKGP KL+ +PNMKR IGMIAGGTGITPM Q + +L DD T ++L++ N +P DILLK ELD LA+++P FK+ Y VDKP S W+G +GYI+ + + K +P P D+++ VCGPP LM ISGDKAKD+SQG + G LK G+T +MVYKF
Sbjct: 54 VALNPEKWLEFKLQEKATVSHDSQLFRFSFDPSTK--LGLDVASCLVTRAPIGQEVEGRKKYVIRPYTPISDPDSKGHFDLLIKVYPDGQMSQYFANLKPGDVVEVKGPIEKLRYSPNMKRQIGMIAGGTGITPMLQVVRAILKNPDDNTQVSLIYANVSPDDILLKRELDRLASSYPNFKVFYTVDKPSSDWRGGAGYISKDMVLKGLPGPGEDSLILVCGPPGLMNHISGDKAKDRSQGEVSGLLKDLGYTADMVYKF 311
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A2I0WGT6_9ASPA (NADH-cytochrome b5 reductase n=3 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0WGT6_9ASPA) HSP 1 Score: 270 bits (689), Expect = 2.480e-85 Identity = 135/260 (51.92%), Postives = 184/260 (70.77%), Query Frame = 3 Query: 150 VALSPKEWREFPVSEVHTLSHDTKMFKIQL-PSSKHETGLETASCLLVQ---GTGLDG--KPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
VAL+P++W EF + E +SH+T +++ P++K GL+ ASC++ + G +G K +RPYTP + ++ G+FDL+IK YPEG +S + LKPGD L VKGP KL+ +PNMK+ +GM+AGGTGITPM Q I +L DD T ++L++ N +P DILLKAELD LAA++P FK+ Y VDKP SW+G +G+I+++ I K +P PS D ++ VCGPP LM ISGDKAKD+SQG L G LK G+TEEMVYKF
Sbjct: 67 VALNPEKWLEFKLQETARVSHNTNLYRFSFDPTAK--LGLDVASCIITRAAIGEESEGRQKYVIRPYTPISDPESKGYFDLLIKVYPEGKMSQHFAQLKPGDVLEVKGPIEKLRYSPNMKKKLGMVAGGTGITPMVQVIKAILKNPDDKTQVSLIYANVSPDDILLKAELDRLAASYPNFKVFYTVDKPSKSWRGGAGFISSDMILKGLPGPSEDTLILVCGPPGLMNHISGDKAKDRSQGELSGLLKDLGYTEEMVYKF 324
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A0K9R212_SPIOL (NADH-cytochrome b5 reductase n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9R212_SPIOL) HSP 1 Score: 268 bits (686), Expect = 7.040e-85 Identity = 134/263 (50.95%), Postives = 176/263 (66.92%), Query Frame = 3 Query: 138 TQTTVALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQ---GTGLDGKP--TVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
TQ + L+PKEW EF + E +SH+TK+F+ S E GL+ ASC+L + G +GK +RPYTP + + G+FDL+IK YPEG +S + LKPGD + VKGP KL+ TPNMK++IGMIAGGTG+TPM Q + +L SDD T ++L++ N +P DILLK +LD LA HP FK+ Y VD P W G GY++ + + K +P P D ++ VCGPP +M+ ISGDKAKD SQG L G LK G+TEEMVYKF
Sbjct: 63 TQKKIVLNPKEWLEFKLHETANVSHNTKLFRFSFDSDA-ELGLDIASCILTRAPTGKNDEGKTKYVIRPYTPISDPEAKGYFDLMIKMYPEGKMSQHFAKLKPGDVVEVKGPIEKLRYTPNMKKHIGMIAGGTGVTPMLQVVEAILKNSDDKTQVSLVYANVSPDDILLKQKLDILATRHPNFKVFYTVDNPSKEWIGGVGYVSKDMVTKGLPGPGDDTLIMVCGPPGMMQHISGDKAKDYSQGELTGILKELGYTEEMVYKF 324 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10599 ID=mRNA_10599|Name=jgi.p|Trimin1|11044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1046bp|location=Sequence derived from alignment at Contig_119:50570..57407- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CACACACCTCGAGTGCTTCGCAAGACAGCAGCATGCTTCGATTCGGCGCAback to top protein sequence of jgi.p|Trimin1|11044 >Trimin1|11044|CE11043_185 ID=Trimin1|11044|CE11043_185|Name=jgi.p|Trimin1|11044|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=294bp MLRFGAAFTAQRATACLGLTLAATAAYASQSFATSTQTTVALSPKEWREFback to top mRNA from alignment at Contig_119:50570..57407- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10599 ID=mRNA_10599|Name=jgi.p|Trimin1|11044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6838bp|location=Sequence derived from alignment at Contig_119:50570..57407- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_119:50570..57407- >mRNA_10599 ID=mRNA_10599|Name=jgi.p|Trimin1|11044|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=882bp|location=Sequence derived from alignment at Contig_119:50570..57407- (Tribonema minus UTEX_B_3156 )back to top |