mRNA_10599 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|11044
Unique NamemRNA_10599
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A835ZLM4_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLM4_9STRA)

HSP 1 Score: 587 bits (1512), Expect = 8.180e-211
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 3
Query:   33 MLRFGAAFTAQRATACLGLTLAATAAYASQSFATSTQTTVALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
            MLRFGAAFTAQRATACLGLTLAATAAYASQSFATSTQTTVALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF
Sbjct:    1 MLRFGAAFTAQRATACLGLTLAATAAYASQSFATSTQTTVALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 293          
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A836C9R3_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R3_9STRA)

HSP 1 Score: 345 bits (885), Expect = 1.850e-115
Identity = 163/254 (64.17%), Postives = 198/254 (77.95%), Query Frame = 3
Query:  153 ALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTV-RPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
            AL P+EWR+F V E+  LSHDTK F + LPS +HE G+ TASCL+V+GTGLDG   V RPYTPT+LN T GHF+LVIK+Y +G VSSYMHGL  GD + VKGPFPK+K+ PNMK+ IG+IAGGTGITPMYQCI ELL+A  DAT + LL+GN+TP DILLK+ELDALA  +PRF +VY V +    W G  G+I   + ++Y+PPPS D+MVFVCGPPPLMK+ISGDK  DKSQG ++G LK  G+TE  VYKF
Sbjct:   38 ALDPQEWRQFTVKEITPLSHDTKKFTVALPSEEHELGMVTASCLMVEGTGLDGTSQVARPYTPTSLNGTKGHFELVIKKYDKGQVSSYMHGLSVGDAIKVKGPFPKIKLDPNMKKRIGLIAGGTGITPMYQCIQELLEADGDATEMVLLYGNKTPKDILLKSELDALATKYPRFSVVYKVGEATDGWTGPVGHIGLEDCKQYLPPPSDDHMVFVCGPPPLMKAISGDKGPDKSQGAVDGVLKELGYTETQVYKF 291          
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A6H5JG59_9PHAE (NADH-cytochrome b5 reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG59_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 1.110e-101
Identity = 144/253 (56.92%), Postives = 190/253 (75.10%), Query Frame = 3
Query:  153 ALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
            A SPKE+R+FP+ E+  ++H+ + F+I LPS +H  G++TASC++V+G G DG   VRPYTPTT N T GHFDLVIK YPEGNVSS++  LK GD + VKGPFPK   +PN+K+ IGMIAGGTGITPM Q + ELL   +D T +TLLF N T +DI+LKAE+D LAA H  F +VY+VDK +  W G +G++ A+ I+ ++P PS D+++FVCGPP +M +ISG K +DKSQG + G LKA G+T +MVYKF
Sbjct:   59 AFSPKEFRDFPLREIEDMTHNVRRFRIGLPSEEHVMGMKTASCIVVKGKGKDGSVAVRPYTPTTTNDTKGHFDLVIKVYPEGNVSSHLFSLKVGDTVAVKGPFPKFDYSPNVKKEIGMIAGGTGITPMLQVLQELLLNPEDKTKVTLLFANVTAADIMLKAEIDKLAAEHDNFDVVYVVDKAEEGWTGATGHVNASLIETHLPKPSGDSVIFVCGPPGMMNAISGPKNEDKSQGEIGGVLKALGYTSDMVYKF 311          
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A7S4CVQ4_9EUGL (NADH-cytochrome b5 reductase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CVQ4_9EUGL)

HSP 1 Score: 279 bits (713), Expect = 2.840e-89
Identity = 130/254 (51.18%), Postives = 181/254 (71.26%), Query Frame = 3
Query:  153 ALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQ-GTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
            A +PKE+R+F + E  T+SHDT++F+  LP+   E GL TASC++ +  TG +G+  +RPYTPTTLN T GHFDLVIK+YP+  ++ ++  LKPGD+L VKGP  K +  PN  ++IGMIAGGTGITPMYQ   E+L   DD T I L++GN+T  DILL+ ELDALA  HP F++ Y +D P   W+G  G++T   +  + P   +++ V+VCGP P+MK++SG KAKD SQG ++G LK  G+T++MV+KF
Sbjct:   48 AFNPKEFRKFKLLESQTISHDTRLFRFALPADTPEMGLPTASCIVTRYATGNEGEYVIRPYTPTTLNDTKGHFDLVIKKYPDAKMAGHIFSLKPGDELEVKGPIIKQRYVPNKYKHIGMIAGGTGITPMYQVAQEVLKNPDDKTEIDLIYGNKTEDDILLRKELDALAKKHPNFRVHYTLDSPGWMWRGDKGFVTPAMVSSHFPGAKSNSYVYVCGPMPMMKAVSGGKAKDYSQGEVDGVLKELGYTKDMVFKF 301          
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A7N0ZSQ8_KALFE (NADH-cytochrome b5 reductase n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0ZSQ8_KALFE)

HSP 1 Score: 272 bits (696), Expect = 2.640e-86
Identity = 135/260 (51.92%), Postives = 179/260 (68.85%), Query Frame = 3
Query:  150 VALSPKEWREFPVSEVHTLSHDTKMFKIQL-PSSKHETGLETASCLLVQ---GTGLDGKP--TVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
            VAL+P +W +F + +  T+SH+TK+F+    PSSK   GL+ ASC+L +   G   +GKP   VRPYTP +     G+FDL+IK YPEG +S +   LKPGD L VKGP  KL+ TPNMK++IGMIAGG+GITPM Q +  +++  DD T ++L++GN +P DILLK +LD LA THP FK+ Y VD+P  +WKG  GYI+     K +P P  D ++ VCGPP +M  ISGDKA+D+SQG L G LK  G+T +MVYKF
Sbjct:   73 VALNPNKWLDFKLEDTATVSHNTKLFRFSFDPSSK--LGLDVASCILTRAPLGQDTEGKPKYVVRPYTPISPTDAKGYFDLLIKIYPEGKMSQHFASLKPGDVLQVKGPIEKLRYTPNMKKHIGMIAGGSGITPMLQVVEAIVNNPDDITQVSLIYGNVSPDDILLKQKLDLLATTHPNFKVFYTVDRPTDNWKGGKGYISKEMAVKGLPHPGDDTLILVCGPPGMMNHISGDKAQDRSQGELTGILKELGYTADMVYKF 330          
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A6S9JGT0_HETAK (NADH-cytochrome b5 reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JGT0_HETAK)

HSP 1 Score: 271 bits (692), Expect = 3.250e-86
Identity = 130/253 (51.38%), Postives = 169/253 (66.80%), Query Frame = 3
Query:  153 ALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
            A SPKEWR F + +V  L+HDT +F+  LP+++HE G++T+SC++VQG    G    RPYTPT+ N+  G FDL++K YP GNVSSY+HGLK GD L VKGP+ KL+  PNM + IGMIAGG+GITPM Q   E+L   DD T I+L+F N T  DI+ KA LD +AA +  F++ Y V    + W+   G   A  I+K MP P A  MVFVCGP  +M ++ G K K+ +QG L+G LK  GFT E VYKF
Sbjct:   41 AFSPKEWRSFKLIQVRELTHDTSLFRFALPTTQHEMGMKTSSCIMVQGETRTGSMVARPYTPTSTNEQKGFFDLIVKNYPNGNVSSYIHGLKIGDNLNVKGPYMKLEYKPNMFKRIGMIAGGSGITPMIQLCREILSNPDDTTEISLIFANNTEGDIMQKAWLDQMAAQYHNFRVYYTVRDAPAGWRQGQGVCDAEMIEKKMPAPEAGTMVFVCGPDGMMDAVCGPKGKNYTQGELQGLLKERGFTAEQVYKF 293          
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A7S2V2T1_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2T1_9STRA)

HSP 1 Score: 271 bits (692), Expect = 3.460e-86
Identity = 130/255 (50.98%), Postives = 171/255 (67.06%), Query Frame = 3
Query:  150 VALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDG-KPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
            VA S KEWR FP+ ++  L+ +T +F+  LPS +HE GL  ASC+ V+    +G KP +RPYTPTT N   G+FDL++K YP G VSSY H LK GD ++VKGP+ KL+  PNM + IGMIAGGTGITPM Q +  +L    D T + L+F N T  DI+ K  LD +A  +  F + Y+V KP  SWKG  G++  + +++ +P P    MVFVCGPP +M+SISGDKA+DKSQG + G LK  G+T  MVYKF
Sbjct:   41 VAFSAKEWRSFPLVQIRELTPNTSLFRFNLPSQEHEMGLSVASCIEVKAPPKEGGKPMIRPYTPTTNNDVKGYFDLIVKDYPNGKVSSYFHNLKIGDSILVKGPYDKLQYKPNMFKRIGMIAGGTGITPMLQMLKVILSNPKDKTEVHLVFANNTEDDIMQKNVLDQMAVEYHNFHVHYVVAKPRPSWKGGVGFVDLDTVERKIPAPEEGTMVFVCGPPGMMESISGDKAEDKSQGEVSGVLKERGYTSGMVYKF 295          
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: I1HCH9_BRADI (NADH-cytochrome b5 reductase n=20 Tax=Pooideae TaxID=147368 RepID=I1HCH9_BRADI)

HSP 1 Score: 271 bits (692), Expect = 5.800e-86
Identity = 135/260 (51.92%), Postives = 183/260 (70.38%), Query Frame = 3
Query:  150 VALSPKEWREFPVSEVHTLSHDTKMFKIQL-PSSKHETGLETASCLLVQ---GTGLDG--KPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
            VAL+P++W EF + E  T+SHD+++F+    PS+K   GL+ ASCL+ +   G  ++G  K  +RPYTP +   + GHFDL+IK YP+G +S Y   LKPGD + VKGP  KL+ +PNMKR IGMIAGGTGITPM Q +  +L   DD T ++L++ N +P DILLK ELD LA+++P FK+ Y VDKP S W+G +GYI+ + + K +P P  D+++ VCGPP LM  ISGDKAKD+SQG + G LK  G+T +MVYKF
Sbjct:   54 VALNPEKWLEFKLQEKATVSHDSQLFRFSFDPSTK--LGLDVASCLVTRAPIGQEVEGRKKYVIRPYTPISDPDSKGHFDLLIKVYPDGQMSQYFANLKPGDVVEVKGPIEKLRYSPNMKRQIGMIAGGTGITPMLQVVRAILKNPDDNTQVSLIYANVSPDDILLKRELDRLASSYPNFKVFYTVDKPSSDWRGGAGYISKDMVLKGLPGPGEDSLILVCGPPGLMNHISGDKAKDRSQGEVSGLLKDLGYTADMVYKF 311          
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A2I0WGT6_9ASPA (NADH-cytochrome b5 reductase n=3 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0WGT6_9ASPA)

HSP 1 Score: 270 bits (689), Expect = 2.480e-85
Identity = 135/260 (51.92%), Postives = 184/260 (70.77%), Query Frame = 3
Query:  150 VALSPKEWREFPVSEVHTLSHDTKMFKIQL-PSSKHETGLETASCLLVQ---GTGLDG--KPTVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
            VAL+P++W EF + E   +SH+T +++    P++K   GL+ ASC++ +   G   +G  K  +RPYTP +  ++ G+FDL+IK YPEG +S +   LKPGD L VKGP  KL+ +PNMK+ +GM+AGGTGITPM Q I  +L   DD T ++L++ N +P DILLKAELD LAA++P FK+ Y VDKP  SW+G +G+I+++ I K +P PS D ++ VCGPP LM  ISGDKAKD+SQG L G LK  G+TEEMVYKF
Sbjct:   67 VALNPEKWLEFKLQETARVSHNTNLYRFSFDPTAK--LGLDVASCIITRAAIGEESEGRQKYVIRPYTPISDPESKGYFDLLIKVYPEGKMSQHFAQLKPGDVLEVKGPIEKLRYSPNMKKKLGMVAGGTGITPMVQVIKAILKNPDDKTQVSLIYANVSPDDILLKAELDRLAASYPNFKVFYTVDKPSKSWRGGAGFISSDMILKGLPGPSEDTLILVCGPPGLMNHISGDKAKDRSQGELSGLLKDLGYTEEMVYKF 324          
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Match: A0A0K9R212_SPIOL (NADH-cytochrome b5 reductase n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9R212_SPIOL)

HSP 1 Score: 268 bits (686), Expect = 7.040e-85
Identity = 134/263 (50.95%), Postives = 176/263 (66.92%), Query Frame = 3
Query:  138 TQTTVALSPKEWREFPVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQ---GTGLDGKP--TVRPYTPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTPNMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLKAELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNMVFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF 911
            TQ  + L+PKEW EF + E   +SH+TK+F+    S   E GL+ ASC+L +   G   +GK    +RPYTP +  +  G+FDL+IK YPEG +S +   LKPGD + VKGP  KL+ TPNMK++IGMIAGGTG+TPM Q +  +L  SDD T ++L++ N +P DILLK +LD LA  HP FK+ Y VD P   W G  GY++ + + K +P P  D ++ VCGPP +M+ ISGDKAKD SQG L G LK  G+TEEMVYKF
Sbjct:   63 TQKKIVLNPKEWLEFKLHETANVSHNTKLFRFSFDSDA-ELGLDIASCILTRAPTGKNDEGKTKYVIRPYTPISDPEAKGYFDLMIKMYPEGKMSQHFAKLKPGDVVEVKGPIEKLRYTPNMKKHIGMIAGGTGVTPMLQVVEAILKNSDDKTQVSLVYANVSPDDILLKQKLDILATRHPNFKVFYTVDNPSKEWIGGVGYVSKDMVTKGLPGPGDDTLIMVCGPPGMMQHISGDKAKDYSQGELTGILKELGYTEEMVYKF 324          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|11044 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZLM4_9STRA8.180e-211100.00NADH-cytochrome b5 reductase n=1 Tax=Tribonema min... [more]
A0A836C9R3_9STRA1.850e-11564.17NADH-cytochrome b5 reductase n=1 Tax=Tribonema min... [more]
A0A6H5JG59_9PHAE1.110e-10156.92NADH-cytochrome b5 reductase n=1 Tax=Ectocarpus sp... [more]
A0A7S4CVQ4_9EUGL2.840e-8951.18NADH-cytochrome b5 reductase n=1 Tax=Eutreptiella ... [more]
A0A7N0ZSQ8_KALFE2.640e-8651.92NADH-cytochrome b5 reductase n=1 Tax=Kalanchoe fed... [more]
A0A6S9JGT0_HETAK3.250e-8651.38NADH-cytochrome b5 reductase n=1 Tax=Heterosigma a... [more]
A0A7S2V2T1_9STRA3.460e-8650.98NADH-cytochrome b5 reductase n=1 Tax=Fibrocapsa ja... [more]
I1HCH9_BRADI5.800e-8651.92NADH-cytochrome b5 reductase n=20 Tax=Pooideae Tax... [more]
A0A2I0WGT6_9ASPA2.480e-8551.92NADH-cytochrome b5 reductase n=3 Tax=Epidendroidea... [more]
A0A0K9R212_SPIOL7.040e-8550.95NADH-cytochrome b5 reductase n=2 Tax=Spinacia oler... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_119contigContig_119:50570..57407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|11044|CE11043_185
BRITEko00000,ko00001,ko01000
KEGG ReactionR00100
KEGG Pathwayko00520,map00520
KEGG koko:K00326
EC1.6.2.2
GOsGO:0003674,GO:0003824,GO:0004128,GO:0005488,GO:0005507,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005794,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009505,GO:0009628,GO:0009651,GO:0012505,GO:0016491,GO:0016651,GO:0016653,GO:0030312,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0055114,GO:0070013,GO:0071944
Descriptionbelongs to the flavoprotein pyridine nucleotide cytochrome reductase family
COG categoryC
Max annot lvl35493|Streptophyta
EggNOG OGsCOG0543@1|root,KOG0534@2759|Eukaryota,37RUI@33090|Viridiplantae,3GEY2@35493|Streptophyta,3KXEZ@4447|Liliopsida,3IA4S@38820|Poales
Evalue1.02e-87
Seed ortholog15368.BRADI2G04610.1
Hectar predicted targeting categorychloroplast
TranscriptId11366
TrackFilteredModels1
ProteinId11044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|11044gene_10599Tribonema minus UTEX_B_3156 geneContig_119 50570..57407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|11044Trimin1|11044|CE11043_185Tribonema minus UTEX_B_3156 polypeptideContig_119 50702..57375 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10599_9exon_10599_9Tribonema minus UTEX_B_3156 exonContig_119 50570..50800 -
exon_10599_8exon_10599_8Tribonema minus UTEX_B_3156 exonContig_119 51621..51686 -
exon_10599_7exon_10599_7Tribonema minus UTEX_B_3156 exonContig_119 52410..52445 -
exon_10599_6exon_10599_6Tribonema minus UTEX_B_3156 exonContig_119 52926..53171 -
exon_10599_5exon_10599_5Tribonema minus UTEX_B_3156 exonContig_119 53482..53496 -
exon_10599_4exon_10599_4Tribonema minus UTEX_B_3156 exonContig_119 54405..54455 -
exon_10599_3exon_10599_3Tribonema minus UTEX_B_3156 exonContig_119 55737..55882 -
exon_10599_2exon_10599_2Tribonema minus UTEX_B_3156 exonContig_119 56595..56697 -
exon_10599_1exon_10599_1Tribonema minus UTEX_B_3156 exonContig_119 57256..57407 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10599UTR3_10599Tribonema minus UTEX_B_3156 three_prime_UTRContig_119 50570..50701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10599CDS_10599Tribonema minus UTEX_B_3156 CDSContig_119 57256..57375 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10599UTR5_10599Tribonema minus UTEX_B_3156 five_prime_UTRContig_119 57376..57407 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10599 ID=mRNA_10599|Name=jgi.p|Trimin1|11044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1046bp|location=Sequence derived from alignment at Contig_119:50570..57407- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACACACCTCGAGTGCTTCGCAAGACAGCAGCATGCTTCGATTCGGCGCA
GCTTTCACTGCTCAGAGGGCCACGGCATGCCTGGGACTCACGCTAGCCGC
GACGGCCGCTTATGCAAGTCAGTCTTTTGCGACTTCGACACAGACCACTG
TGGCCCTGAGCCCAAAGGAGTGGCGGGAGTTTCCTGTGAGCGAGGTGCAC
ACGCTGAGCCATGACACAAAGATGTTCAAAATACAGCTGCCTTCCTCCAA
ACATGAAACGGGGCTCGAAACGGCGTCGTGCCTGCTGGTTCAGGGCACGG
GGCTCGACGGCAAGCCCACCGTGCGGCCGTACACCCCCACAACGCTCAAC
AAGACGCTGGGCCACTTTGACCTGGTCATCAAGCGCTACCCGGAGGGCAA
TGTCTCGAGCTACATGCACGGCCTCAAGCCCGGCGACAAGCTCATGGTCA
AGGGGCCCTTCCCCAAGCTGAAGGTGACGCCGAACATGAAGCGCAACATC
GGCATGATCGCGGGCGGCACGGGCATCACGCCCATGTACCAGTGCATCCT
GGAGCTCCTCGACGCGTCCGACGACGCGACCAACATCACGCTGCTGTTCG
GCAACCGCACGCCGTCCGACATCCTGCTCAAGGCGGAGCTGGACGCGCTC
GCCGCCACGCACCCGCGCTTCAAGCTCGTGTACATCGTCGACAAGCCCGA
CAGCAGCTGGAAGGGCCTCTCCGGCTACATCACAGCGAACGAGATCCAGA
AATACATGCCGCCGCCGTCAGCCGACAACATGGTGTTTGTGTGCGGGCCA
CCGCCGCTCATGAAGTCCATCTCCGGCGACAAGGCCAAGGACAAGTCGCA
GGGGCCGCTCGAGGGCGCGCTCAAGGCGTGCGGCTTCACAGAGGAAATGG
TCTACAAGTTCTAGAGGCGCGGCTCGTGATGAGCGCTGCTGCTGCTGCTG
CTGCTGCCATGGCCACGCGCCGCGGCGCGGCGCGGCGCTTTGCAGCAGCA
TATTTACGCCAGCAATGTCGTTATTGCACCTCCTTAATAGTGAGCG
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protein sequence of jgi.p|Trimin1|11044

>Trimin1|11044|CE11043_185 ID=Trimin1|11044|CE11043_185|Name=jgi.p|Trimin1|11044|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=294bp
MLRFGAAFTAQRATACLGLTLAATAAYASQSFATSTQTTVALSPKEWREF
PVSEVHTLSHDTKMFKIQLPSSKHETGLETASCLLVQGTGLDGKPTVRPY
TPTTLNKTLGHFDLVIKRYPEGNVSSYMHGLKPGDKLMVKGPFPKLKVTP
NMKRNIGMIAGGTGITPMYQCILELLDASDDATNITLLFGNRTPSDILLK
AELDALAATHPRFKLVYIVDKPDSSWKGLSGYITANEIQKYMPPPSADNM
VFVCGPPPLMKSISGDKAKDKSQGPLEGALKACGFTEEMVYKF*
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mRNA from alignment at Contig_119:50570..57407-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10599 ID=mRNA_10599|Name=jgi.p|Trimin1|11044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6838bp|location=Sequence derived from alignment at Contig_119:50570..57407- (Tribonema minus UTEX_B_3156 )
CACACACCTCGAGTGCTTCGCAAGACAGCAGCATGCTTCGATTCGGCGCA GCTTTCACTGCTCAGAGGGCCACGGCATGCCTGGGACTCACGCTAGCCGC GACGGCCGCTTATGCAAGTCAGTCTTTTGCGACTTCGACACAGACCACTG TGGTAAGTACCTAGCTCTCGCTGCCATCCTCGCAGCGCAACCTCAGATGA TCGTAAAACATTATCATTGGATGCATGACTAGATTTCGAAGGTACCGTCC GCTCGGTTGTCTGCTCTCGGTTTTGTCTTACCAGGGGGATCATGTTTTGT CGAGCAACACGGAATGCGTCATGCTTTGGTGTATTTCAGCTTGTAGAGTG CAGTACTATGGTCTTCCCCAAAGATCTGGTTCTCTTTCATCAGTACATCC AACTCGAGGCTTGCAATCCGTGCATTGGCGGCAGTATTGCCTGGGTGAAG CTTGCCTTTGTGCAGCTTTTGTCGAGCTGACTTTGGATTTCTGTGCTGCT GCCAGCAGCTTTTTACGACACTTCCAGTGCTGCAACTACGTGCAGCTTCC TTAAATGTCCGGCCAGGGATGACTGCTTCTACGTACGCAAGCCTGCTGGC TCCGGCGCTTGTGCTCTGTGCCTCGCGTTGTCCCCGTGTGCTCCTCGCTC TGATGTTGAGAGCGAAAGCTGATGCAAAAAGCTTCATCAACTTATTTGGC TGATGCGCAGGCCCTGAGCCCAAAGGAGTGGCGGGAGTTTCCTGTGAGCG AGGTGCACACGCTGAGCCATGACACAAAGATGTTCAAAATACAGCTGCCT TCCTCCAAACATGGTGAGAGCCCAGTCGTGTCCATAGAACATGTTGTCAT CATTGGTAAAGGCAGCTGCTTGCGTGGCGTTCAGTGCGACACCTCCTCCT GGAGCGCGCCAGCCTGTCTTGTTGATGTACAAGCCTTATGCGGAGTGGAT CAGACCAGCGGCGAGGCTGCTGCAATGCAGGCACCGCACGTCAAGCACGA AGAGCTGACGCCGGCAAGTGTCTGGCTATCGGTGCTGAGCGTAACTAAGC GTTAGAAATCTGAGCACGCCGCTGCACGCGGAGGGCCGCAGGCGCAGCAG CCGCGACTGATGCTGCGGGCTGCATCAATCTTCTCTTGAAGTACGACGGC CGTGGCAGGTGAGCACCGCCGTGCTGCGCCGCCTGCGCTCTGGACAGTGC TCAGCACGCGGCGCGCCACCTCGTTCTCCCCATGAACATGATCCCCAGCC TATCACAGGCGACCGAGCCGCACCGTGCTTGCAGCACGCGGATCTGGTGG GGAGCGGGCGCGCCTGGCGGCATGCGAGAGCGAGCGAGTACATAGACTCA GACTTGAAGTATAAACCATCGCGCCACCAGCGCACTGCTCTTGTGTGTGT GCGCTCCCAGCTCTAATATATGTACACCTGCAGACAACCGCCAAGCTCTC TGTGCACGATCGACATGTGCACTCTCCCTCACCTGCCCCCCCCCGCACTC TCGTCCTCGTGCCCCGTGCCGCCAGAAACGGGGCTCGAAACGGCGTCGTG CCTGCTGGTTCAGGGCACGGGGCTCGACGGCAAGCCCACCGTGCGGCCGT ACACCCCCACAACGCTCAACAAGACGCTGGGCCACTTTGACCTGGTCATC AAGCGCTACCCGGAGGGCAATGTGAGCGGCGCGCCGGCGGCTCTGTGTGG CACTGCACATTTGAACTTGCTCCCAACTTGCTCTGAGGATAAGGGGGGGT AGGGTAGCACAGGGCGTCGGGTGAGGGCGGCGCTGGGGTTACAGTCGGCA GGGGCGTCAGGTGGTATACTGTTCCATGCAATACGCGCTGTACACGAAGC GGAATTGCAGGTGGCAGCGCTAAAAATTGCCTGCTCAGCGGGCGCGCTCT CCAAAAGGTATTGAGTGCGGACTCCCCTAAGCTTTTGCATTCTCGCTGCT GTGCGCTCCATCGGCGATAGAAGCCCAGCTCGGTATACGTGTACGAGCCC AAGAAGCTGTGCAAAGTACATGGAGCCCACCCTGATGCCCATTTGTATGC TCGGTGGTGAGTCCATGTTGTTGTCGTGACCCCACACCATGCCTTTCAGC AGTTCGTGACTCTCCCACACTGAGCTAGGCCTGCGCCAACGTCGATATCG ACATCACATGGTCTCCTAGAAATCTGATGATGGGTATGGCCATATCATGG TGACAGCACCAGCTCTCGTCCGATCGCTGAAGTTAAGCACCCTTGAGCGG AGCTAGTACTACGGTTGGGGACCACGTGGGAAGCCTCCGTGCTGTACTCT TTTTTTCATTCTTGCCTACCCCCAGACAGTGTTTTGACCCACGCCTAGTG GTAGAGTAATATCCCAACCTACTTGAAAGGAGCATGATGTACATGACAAT CACATACAACTATTCGTGGAACTTTACTACGATGCAGCGTCATTCCCCAC ATGCGTGCGCATCGCCTCGCTCATTGAATCGCGCGCACAGTTCACTGGCC ACCATAACCGCAACGCGAAGTGATGCTGCGTCAGCCTGCCTGCCAGCCAC GCGGCGCAACAATAGGCGGCCGCGCCCCTGCCGTCCGGCGGCGACACGGT CACGATGCATGCGCCCCGGCCGCGCCCGCCACAAGCCTCCATGTCTTACT GATGCATGCTCACATGCCTGGTGTACACATACGTGGCATACATGCCCTAC TGTTCGCGTGGCAGCAGACGCGACGCTTTCGCTGCCCCACGCGACGTTCC TGGAGCGCACGGCTGCGTGCGCCCGTGGACTTGTTTGTGATTCGCAGCTG CACCTGCGTTGCTTGGGTGCAGCGCGCTTCAGCACCCCCATGTGCAGACG CGTGCGCGGCATCCCCGTCGCCAGCGCGCCCACTGCCGCCGCCGTCTGAC GTGCGCGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTTGCGCGCCCGCCGC AGGTCTCGAGCTACATGCACGGCCTCAAGCCCGGCGACAAGCTCATGGTC AAGGTGCGCTTCCGCCGCCGCTGATGCCGCGTGTCGCCACGAATCAGCAG CGAGCCTCTCTCGTCTGCCTCGCGCGTGCGTGCTGTCGGGTTTCACGTCG CGGCTCGGTGTGGCCATGCTCAAGACTTTGAGTCAAGACTCTAGAGCCAC GGTGCCTGGCATGGATGGCTGGTTTGCTCACGACTGAGTGGTGCCCGTGG CACTTGCGTTGCCGCATGTCATTCTGCCGCCGTGCACGCCGATCCAAGTG CCAGAGCGCGCTGACTGCTGGCCTCTTCACAACTTCACCGTGACTCATTG AAGTTGAGCGCGTGGGTCGGTTCATGCGCATGCACCGCATTCCTGCCTGT CAATCCGGCGTGTCAGCCTTGAAGCGTACAGCCAATGGCACCGTTCAAAA GTACTTGAGGAGCAGAGCAATTCAAGCGCGTGATTCGCTTCAGAAGTGCA ATGTAGCGCGGAGTGTACAGAGCGTCACGATGCCGCTCAACGCGCCGCTC CGTCAGCCGCGAGGCGCGCACGCCACATGAGATCCCATGCCGCAGCAACG TTGTCTGTTTTTCCCCATAGCCAACGCGCTGCTGCATGCGTATGCGCACG AGCCAGGTCTCGTCCATGTGACGACGGTCCTGCAGCTGCTGTCAGGGTGA ACTCTGCGGCATGCACTGTCATCTGCCAGGATGAGCGTCTGCAAAAGCAA CGGTATGTTCGAGATGTACTGCGCGCGAGCGGCAGCCACTGCTGGTGACG TCGTTGACAGCAGGACGTGTCGTTGGTGATTCCTTTTCGCCTACACGTGC GCCCTTCTGTGCGAATGCGTCACTGACACGCGTGCTGCCCCTGCCCTGTT CATCGCCCCCCCCTTCCCCCCCCTCCCCCTTCTCATGTCTGTGGCGCCGA CACGTGTGCAGGGGCCCTTCCCCAAGGTGAGCGCCGAATGCCGCTGGCCC CCCCGCACGCGTAATTTGCGCAGTGTGTTCCCGCATGCTTCGAGCTTGTG CCGCTGCGCCTGGCCCTTGAGCAATTACCGCAGTCATCTGCCTGGCAGCG TCTGCAAAGATCATCACAGCACCAAGACACTGCCACTGACCATGCCCTGC GGCGTCAGTACTAGGGGGATAGGGTTGACGGTGCCTATACTGACCGCCTG ACTTTGCCAACGACTGATCGCCATGACCTCGGGTGCTTCTGAATTTCCGT GCCGCGCCACGCCGCTCTCCGCCGCCGCCGCCGCAGCTGAAGGTGACGCC GAACATGAAGCGCAACATCGGCATGATCGCGGGCGGCACGGGCATCACGC CCATGTACCAGTGCATCCTGGAGCTCCTCGACGCGTCCGACGACGCGACC AACATCACGCTGCTGTTCGGCAACCGCACGCCGTCCGACATCCTGCTCAA GGCGGAGCTGGACGCGCTCGCCGCCACGCACCCGCGCTTCAAGCTCGTGT ACATCGTCGACAAGCCCGACAGCAGCTGGAAGGTGCGCGCGTCTGGCAGC CGTGAAGGCATGCATGTCCGTGCAGCTGGTGGGCAGGCATGCAGCCATCG AGCAGCTGGTAGGTACTTCTGTGCGCTAGGTTCGGCAGGTATATGAGGCA CGATTGGGAAGTGCTCTGCTACCGAGCGTCAGGGGTTGGTGGCAGGTGCA CGCAAGCCAGCCCGCATAGCGCATACGGTATAGTACGTCGCAACAAGAGG TGGCCGCTCAACGTGTTGTTAGTTGTGACGTGACCATACCTGCACTATTG ATGAGCTGCGGTAGCAGCCGGACAATGTACCCACGGCGCATTGGCACTGC CTTTCAGCAGTGCGCTATCGTACGCTTCTTCCCCTGAGGTACTTCGAAGT AGTAGCAGCGCACAACCCACTTGCATTGTTCTTGGCCACGTCAAGCCATG CACACATGCCTAACTATGGTCCGTTTCGCATGCGTGTCCTTCTGCAATGT CTGGTGTCTCAGGGCCTCTCCGGCTACATCACAGCGAACGAGATCCAGGT GTGTCAACGTGAACTTCAACCGCAAGCGCGGCACTTGTTCACATTTGCGG CGCACGCCATTGCTGGCTGAGCACCTGATGCGTATATCCGCATGCAAGTA GGAGTGCTCGGCGCTCTATCTTGGCTTTTGCACAACGCTCTCATGACTGA CCGCACACGTCAGATGTCGACAGCAGTTGAAGGGGTCTGAGCCGCTGACA ATGCGCAGGGCAATCCCCTTCCACGTTGACTTGCAGCACACTTGCAGCAT TGGACCCTGCAGCAGCTTTACTGCCTGCTTCTGCAGCTGCCTGCGGCCGC CTTGCGTGCATGCGGCAGCACCTGAGATGTACTGTTGCACCGTTTCATCC TGACAATGAGAGTCCATGTGATATGACCCCCCCCCCCCCCCCCTGTTGTG ATTCCGGGGGCTGCACCGCCAAACCAACCGTACACCGCTCGGCCTACAAG CATGCATGTGTGCATCGCAGTGGCAGGCTTTGTGGCACCTGTGGGCACCA TGTGCCATATGCGCATGCCGTCACGCCACACGTGACTCTGAACTGCATGC GGATACGACATGACTCTGACGTTGTGCCAAGAAGCCCTCACAGCGTGCTC TGCCCACTGCTGCACTTTTTCCAGCTCATTTTAGCCAGTATGATTGCAGC TGTGTGCCTCACCTCCCTTGCCCCCCCCCCCCCCCCCCCCCCCGTCCTTT CCGTGTCCCTTCGCATGCCAGAAATACATGCCGCCGCCGTCAGCCGACAA CATGGTGTTTGTGTGCGGGCCACCGCCGCTCATGAAGGTGAGCTTGCTAT CAAGAACACGCACCTGTTGTCCATGACCACATGTCATGGTCATGGAGAGC TGCGACGATTGCCGTGTGGCTGGCTCCGTTGCACCATACAGTGGGGGGTT ACTGGTAGTCTCGAGGTGCTTGAAGTAGTCATTGTGCAAGATGTTTTTCC TCGTTATGAGTGTGGCGACGTTGCAACAGCTTGATCATACCAGCTTTGGG TGCTGTTCTGAGGGCTAGCCTGGCGCGTTCCAGCATTTTATTTCGTGGAG GGCTGCGCGGAATGCACAGGAGGCATAGACTACCGTCGTTGATTCTGCAT TTTTTTTTATTGCGGCTGCAATGGAACGGGCGACCACCCGCTTCGATGTG GCATCTTTGCAGCTTGCGCCTGCCGTGGACCGTATTTGGCTCACAACTGG CCCCAGAAATTGGGGCGAGCTGCAGCTCCTCTGTGATGGTCGAGGCTGCC TTCTTCAGTCTGCCGCGAAGTCGCGGCAGCTACACTCTTGGTCAATGCTG GCAGCGTGTGATGCGTCATCGTCACCTTTCTGCAGTCAAACCGCATGCGC CCTAAGGGTGCATGGCTACGGCGACTGCGCGCTTGCACGACACACTAACA AGCGCGTTTTTGCACTACTCAGGTCTGGCATGTACTTGCAGGCAGATAGA CAAGTTGATGACCGCAGCCAGGGTGCTGCAAATCAAATGATAGATTTTGC ATTTCCCAGCCAGGCTGCGAAAGATTAGGGGCCGCCTACTGCAAAGAGCG CTTGCTGACCCTCCGGTCGCGACCGTTTCTGCATGCCCCTGCTGCACACT GCTGCAGTCCATCTCCGGCGACAAGGCCAAGGACAAGTCGCAGGGGCCGC TCGAGGGCGCGCTCAAGGCGTGCGGCTTCACAGAGGAAATGGTCTACAAG TTCTAGAGGCGCGGCTCGTGATGAGCGCTGCTGCTGCTGCTGCTGCTGCC ATGGCCACGCGCCGCGGCGCGGCGCGGCGCTTTGCAGCAGCATATTTACG CCAGCAATGTCGTTATTGCACCTCCTTAATAGTGAGCG
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Coding sequence (CDS) from alignment at Contig_119:50570..57407-

>mRNA_10599 ID=mRNA_10599|Name=jgi.p|Trimin1|11044|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=882bp|location=Sequence derived from alignment at Contig_119:50570..57407- (Tribonema minus UTEX_B_3156 )
ATGCTTCGATTCGGCGCAGCTTTCACTGCTCAGAGGGCCACGGCATGCCT
GGGACTCACGCTAGCCGCGACGGCCGCTTATGCAAGTCAGTCTTTTGCGA
CTTCGACACAGACCACTGTGGCCCTGAGCCCAAAGGAGTGGCGGGAGTTT
CCTGTGAGCGAGGTGCACACGCTGAGCCATGACACAAAGATGTTCAAAAT
ACAGCTGCCTTCCTCCAAACATGAAACGGGGCTCGAAACGGCGTCGTGCC
TGCTGGTTCAGGGCACGGGGCTCGACGGCAAGCCCACCGTGCGGCCGTAC
ACCCCCACAACGCTCAACAAGACGCTGGGCCACTTTGACCTGGTCATCAA
GCGCTACCCGGAGGGCAATGTCTCGAGCTACATGCACGGCCTCAAGCCCG
GCGACAAGCTCATGGTCAAGGGGCCCTTCCCCAAGCTGAAGGTGACGCCG
AACATGAAGCGCAACATCGGCATGATCGCGGGCGGCACGGGCATCACGCC
CATGTACCAGTGCATCCTGGAGCTCCTCGACGCGTCCGACGACGCGACCA
ACATCACGCTGCTGTTCGGCAACCGCACGCCGTCCGACATCCTGCTCAAG
GCGGAGCTGGACGCGCTCGCCGCCACGCACCCGCGCTTCAAGCTCGTGTA
CATCGTCGACAAGCCCGACAGCAGCTGGAAGGGCCTCTCCGGCTACATCA
CAGCGAACGAGATCCAGAAATACATGCCGCCGCCGTCAGCCGACAACATG
GTGTTTGTGTGCGGGCCACCGCCGCTCATGAAGTCCATCTCCGGCGACAA
GGCCAAGGACAAGTCGCAGGGGCCGCTCGAGGGCGCGCTCAAGGCGTGCG
GCTTCACAGAGGAAATGGTCTACAAGTTCTAG
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