mRNA_10588 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A836C9F1_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F1_9STRA) HSP 1 Score: 396 bits (1018), Expect = 4.720e-138 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1
Query: 40 MSSPSPEGLACIGRTFTSAGGSAPGTPEPAPKSARSSGETEEERVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSVCG 714
MSSPSPEGLACIGRTFTSAGGSAPGTPEPAPKSARSSGETEEERVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSVCG
Sbjct: 1 MSSPSPEGLACIGRTFTSAGGSAPGTPEPAPKSARSSGETEEERVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSVCG 225
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: K0RAC2_THAOC (RING-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAC2_THAOC) HSP 1 Score: 113 bits (283), Expect = 1.350e-25 Identity = 89/190 (46.84%), Postives = 113/190 (59.47%), Query Frame = 1
Query: 154 ETEEERVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLP-----RKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 708
ETEEER+ RE++ESXXXXXXXXXXX S A + LR Q +D +D+ A++ A+ EE ED GG + EG E M YDALL LGE IGDVK+ERWRL + I +LP R+ A + T KC VC +YE G+EL ALPCGH +HA+C+ WL D C LC++S+
Sbjct: 204 ETEEERLAREMEESXXXXXXXXXXXAILSIAASQNFLR--QNADRFD----SSDLAAIQAALAEETEDAGGDEVAADGEGGESNEMSYDALLRLGENIGDVKEERWRLVSKEKIEKLPTVKFLREMAEGKEENH-------TLVKCQVCQFKYEEGDELRALPCGHYFHAACIDEWLTNKDTCALCRKSI 380
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: D7FY13_ECTSI (Ring finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY13_ECTSI) HSP 1 Score: 102 bits (253), Expect = 8.870e-23 Identity = 63/161 (39.13%), Postives = 85/161 (52.80%), Query Frame = 1
Query: 238 SYQAGMDALRAAQGMG----GWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 708
SY A +D R+A G EG+ D+ AM+ M E++ + E+E ++YD +LELG AIGDV+++RWR+R + IA LPR A D KCLVC C+YE +EL LPC H +H CV WL + CP C+RSV
Sbjct: 51 SYAAAVDNFRSAAXXXXXXXGGMEGVAPEDMAAMQALMEEDENNPDAFAMAEDES------LDYDGMLELGSAIGDVRKDRWRMRCKSVIAALPRVSYTAGGYSGG------EDTKCLVCQCDYEEDDELRILPCSHTFHTECVDGWLEENEECPTCRRSV 199
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A7S2YQL4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YQL4_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.550e-20 Identity = 66/180 (36.67%), Postives = 91/180 (50.56%), Query Frame = 1
Query: 169 RVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 708
R RE +ES SYQ + LR ++ + + D +A+ A+ EE+ + G E E DEE + Y+ +L+LGE IGDVK ERW + A IA+LP + A +++KCLVC EYE GE L LPCGH +H CV WL R D CP C+ ++
Sbjct: 1 RRQREEEESLELARMLMAEEAMASYQHSVQYLRDSRDQ------LSQEDYQALEAALQEEEAEQEGAAVAELE--DEEGNLSYETMLQLGERIGDVKSERWTVVAQKHIAKLPTE---IFDNNKIKKDADDSESKCLVCQHEYECGENLRRLPCGHCFHMECVDQWLERTDLCPYCRTAI 169
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A1E7FQW7_9STRA (RING-type domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQW7_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 4.810e-20 Identity = 68/185 (36.76%), Postives = 93/185 (50.27%), Query Frame = 1
Query: 157 TEEERVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPR-KRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 708
T E+R RE +ES +Y A MD LR Q E D+ A ++AM +++++ + + EE+ G + + M Y+A+L+LGE IGDVK ERW RA I LP K + C D KCL+C EY GE+L LPC H +H CV WL D CP C+ S+
Sbjct: 67 TAEQRAAREEEESIELARAMMAEEAMGAYAAHMDYLRHNQDQ------FSEEDLAAFQIAMDDDEQEANTINDTEEDNGQDISGMSYEAMLQLGERIGDVKTERWARRAQKTIDTLPIIKFDREKINNKTNTNQC--DTKCLICQEEYCTGEDLRQLPCRHCFHQECVDQWLLTKDFCPYCRTSL 243
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A7S3Q5R0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5R0_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.460e-18 Identity = 65/138 (47.10%), Postives = 80/138 (57.97%), Query Frame = 1
Query: 307 EADIRAMRLAMGEEQEDDGGMGEGEE-EEGDEETPME--YDALLELGEAIGDVKQERWRLRAPAAIARLPRKR-AAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 708
E D+ A+R M EE G+G+E EEGD E+ E YDALL+LGE IGDVKQERW +RA IA+L K A G A D KCLVC YE GE++ LPC H +H+ CV WL D CP C++ +
Sbjct: 280 EEDLAALRAIMAEESPIVEEHGDGDEFEEGDYESDEELSYDALLDLGERIGDVKQERWAVRAADEIAKLTCKTFCKAMGEGKDENDA---DVKCLVCQFAYEEGEKVTILPCRHYFHSECVGQWLGAKDFCPYCRQCI 414
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A7S4HU52_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HU52_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 3.030e-18 Identity = 71/187 (37.97%), Postives = 91/187 (48.66%), Query Frame = 1
Query: 151 GETEEERVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKR-AAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 708
GET E+R +ES SY D LR E D+ A+ AM EE DD +GE + + YDALL L E IGDVKQERW ++A I LP + +A S G + + KCLVC C+YE G+ L LPCGH +H CV WL+ D CP C++S+
Sbjct: 143 GETAEDRRRXXXEESEALARHLMAEEAFASYNISTDFLRNNADQ------YSEEDLAALEAAMAEE--DD--VGEEIDVADQPSEELSYDALLRLSERIGDVKQERWTMQAEKHIKSLPTVQFVSAISQGKDENDSAV---KCLVCQCQYEEGDILRNLPCGHCFHRECVDPWLSTKDICPYCRQSI 316
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A7S3L9V5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9V5_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 9.180e-18 Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query: 394 DEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 708
D+E + YDALL LGE IGDV+ ERW ++A I RLP + A + A AA ++ KCLVC EY+ E+L LPCGH +HA CV WL D C C++ +
Sbjct: 110 DDEAELSYDALLSLGERIGDVRTERWAMKAQTHIDRLPLETYDASAVDARGAADNDSEVKCLVCQHEYQHQEKLRRLPCGHIFHAECVDQWLQTHDDCLYCRKCI 214
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A7S4DPM3_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DPM3_9EUKA) HSP 1 Score: 87.4 bits (215), Expect = 4.420e-17 Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 1
Query: 409 MEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSVC 711
M ++ L+ELG IG VKQ+ W +A +A LP + KCLVC CEYEAGE L LPC H +H C++ WL + CPLCKRS+C
Sbjct: 127 MTHEELVELGNRIGSVKQQTWEEKAAQTVANLPTMKFTGEGK--------FCGEKCLVCQCEYEAGEFLKCLPCNHAFHNGCISDWLRQNPECPLCKRSIC 219
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A5A8CA03_CAFRO (RING-type domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CA03_CAFRO) HSP 1 Score: 85.5 bits (210), Expect = 1.620e-15 Identity = 62/163 (38.04%), Postives = 88/163 (53.99%), Query Frame = 1
Query: 259 ALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGG--------------MGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAG-EELMALPCGHDYHASCVAAWLARADACPLCKR 702
AL + +G GG D + E +++L M E Q +GG + + + EEG M YD LL+LGE +GDV++ERW+ RAPA IA LPR GA + + + C +C CE+EAG E+++ LPCGH++H C WL D CP +R
Sbjct: 217 ALASMRGQGGAD--VDEDTRLSLQLMMAEVQALNGGDEEQMARLAEAAEVVADADAEEGAAADGMGYDELLQLGEQLGDVRKERWQARAPALIAALPR--------GAWSGSG---EPMCAICRCEWEAGAEDVLKLPCGHEFHEDCGGHWLKDNDTCPRKRR 366 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10588 ID=mRNA_10588|Name=jgi.p|Trimin1|88987|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=796bp|location=Sequence derived from alignment at Contig_74:647997..650075- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGATCTTATCAACACCGGGCAAGAGACCGCGAGACGACATGTCGTCGCCback to top protein sequence of jgi.p|Trimin1|88987 >Trimin1|88987|CE88986_32 ID=Trimin1|88987|CE88986_32|Name=jgi.p|Trimin1|88987|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=226bp MSSPSPEGLACIGRTFTSAGGSAPGTPEPAPKSARSSGETEEERVMRELQback to top mRNA from alignment at Contig_74:647997..650075- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10588 ID=mRNA_10588|Name=jgi.p|Trimin1|88987|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2079bp|location=Sequence derived from alignment at Contig_74:647997..650075- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_74:647997..650075- >mRNA_10588 ID=mRNA_10588|Name=jgi.p|Trimin1|88987|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=678bp|location=Sequence derived from alignment at Contig_74:647997..650075- (Tribonema minus UTEX_B_3156 )back to top |