Trimin1|88987|CE88986_32 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|88987
Unique NameTrimin1|88987|CE88986_32
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length226
Homology
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A836C9F1_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F1_9STRA)

HSP 1 Score: 396 bits (1018), Expect = 1.000e-138
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query:    1 MSSPSPEGLACIGRTFTSAGGSAPGTPEPAPKSARSSGETEEERVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSVCG 225
            MSSPSPEGLACIGRTFTSAGGSAPGTPEPAPKSARSSGETEEERVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSVCG
Sbjct:    1 MSSPSPEGLACIGRTFTSAGGSAPGTPEPAPKSARSSGETEEERVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSVCG 225          
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: K0RAC2_THAOC (RING-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAC2_THAOC)

HSP 1 Score: 114 bits (285), Expect = 2.410e-26
Identity = 89/190 (46.84%), Postives = 113/190 (59.47%), Query Frame = 0
Query:   39 ETEEERVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLP-----RKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 223
            ETEEER+ RE++ESXXXXXXXXXXX   S  A  + LR  Q    +D     +D+ A++ A+ EE ED GG     + EG E   M YDALL LGE IGDVK+ERWRL +   I +LP     R+ A  +           T  KC VC  +YE G+EL ALPCGH +HA+C+  WL   D C LC++S+
Sbjct:  204 ETEEERLAREMEESXXXXXXXXXXXAILSIAASQNFLR--QNADRFD----SSDLAAIQAALAEETEDAGGDEVAADGEGGESNEMSYDALLRLGENIGDVKEERWRLVSKEKIEKLPTVKFLREMAEGKEENH-------TLVKCQVCQFKYEEGDELRALPCGHYFHAACIDEWLTNKDTCALCRKSI 380          
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: D7FY13_ECTSI (Ring finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY13_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.690e-23
Identity = 63/161 (39.13%), Postives = 85/161 (52.80%), Query Frame = 0
Query:   67 SYQAGMDALRAAQGMG----GWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 223
            SY A +D  R+A        G  EG+   D+ AM+  M E++ +       E+E       ++YD +LELG AIGDV+++RWR+R  + IA LPR    A             D KCLVC C+YE  +EL  LPC H +H  CV  WL   + CP C+RSV
Sbjct:   51 SYAAAVDNFRSAAXXXXXXXGGMEGVAPEDMAAMQALMEEDENNPDAFAMAEDES------LDYDGMLELGSAIGDVRKDRWRMRCKSVIAALPRVSYTAGGYSGG------EDTKCLVCQCDYEEDDELRILPCSHTFHTECVDGWLEENEECPTCRRSV 199          
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A7S2YQL4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YQL4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.170e-21
Identity = 66/180 (36.67%), Postives = 91/180 (50.56%), Query Frame = 0
Query:   44 RVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 223
            R  RE +ES              SYQ  +  LR ++        + + D +A+  A+ EE+ +  G    E E  DEE  + Y+ +L+LGE IGDVK ERW + A   IA+LP +             A  +++KCLVC  EYE GE L  LPCGH +H  CV  WL R D CP C+ ++
Sbjct:    1 RRQREEEESLELARMLMAEEAMASYQHSVQYLRDSRDQ------LSQEDYQALEAALQEEEAEQEGAAVAELE--DEEGNLSYETMLQLGERIGDVKSERWTVVAQKHIAKLPTE---IFDNNKIKKDADDSESKCLVCQHEYECGENLRRLPCGHCFHMECVDQWLERTDLCPYCRTAI 169          
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A1E7FQW7_9STRA (RING-type domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQW7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.690e-21
Identity = 68/185 (36.76%), Postives = 93/185 (50.27%), Query Frame = 0
Query:   40 TEEERVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPR-KRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 223
            T E+R  RE +ES              +Y A MD LR  Q          E D+ A ++AM +++++   + + EE+ G + + M Y+A+L+LGE IGDVK ERW  RA   I  LP  K    +         C  D KCL+C  EY  GE+L  LPC H +H  CV  WL   D CP C+ S+
Sbjct:   67 TAEQRAAREEEESIELARAMMAEEAMGAYAAHMDYLRHNQDQ------FSEEDLAAFQIAMDDDEQEANTINDTEEDNGQDISGMSYEAMLQLGERIGDVKTERWARRAQKTIDTLPIIKFDREKINNKTNTNQC--DTKCLICQEEYCTGEDLRQLPCRHCFHQECVDQWLLTKDFCPYCRTSL 243          
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A7S3Q5R0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5R0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.150e-19
Identity = 65/138 (47.10%), Postives = 80/138 (57.97%), Query Frame = 0
Query:   90 EADIRAMRLAMGEEQEDDGGMGEGEE-EEGDEETPME--YDALLELGEAIGDVKQERWRLRAPAAIARLPRKR-AAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 223
            E D+ A+R  M EE       G+G+E EEGD E+  E  YDALL+LGE IGDVKQERW +RA   IA+L  K    A   G     A   D KCLVC   YE GE++  LPC H +H+ CV  WL   D CP C++ +
Sbjct:  280 EEDLAALRAIMAEESPIVEEHGDGDEFEEGDYESDEELSYDALLDLGERIGDVKQERWAVRAADEIAKLTCKTFCKAMGEGKDENDA---DVKCLVCQFAYEEGEKVTILPCRHYFHSECVGQWLGAKDFCPYCRQCI 414          
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A7S4HU52_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HU52_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.370e-19
Identity = 71/187 (37.97%), Postives = 91/187 (48.66%), Query Frame = 0
Query:   38 GETEEERVMRELQESXXXXXXXXXXXXXXSYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKR-AAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 223
            GET E+R     +ES              SY    D LR             E D+ A+  AM EE  DD  +GE  +        + YDALL L E IGDVKQERW ++A   I  LP  +  +A S G     + +   KCLVC C+YE G+ L  LPCGH +H  CV  WL+  D CP C++S+
Sbjct:  143 GETAEDRRRXXXEESEALARHLMAEEAFASYNISTDFLRNNADQ------YSEEDLAALEAAMAEE--DD--VGEEIDVADQPSEELSYDALLRLSERIGDVKQERWTMQAEKHIKSLPTVQFVSAISQGKDENDSAV---KCLVCQCQYEEGDILRNLPCGHCFHRECVDPWLSTKDICPYCRQSI 316          
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A7S3L9V5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9V5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.970e-18
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 0
Query:  119 DEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 223
            D+E  + YDALL LGE IGDV+ ERW ++A   I RLP +   A +  A  AA   ++ KCLVC  EY+  E+L  LPCGH +HA CV  WL   D C  C++ +
Sbjct:  110 DDEAELSYDALLSLGERIGDVRTERWAMKAQTHIDRLPLETYDASAVDARGAADNDSEVKCLVCQHEYQHQEKLRRLPCGHIFHAECVDQWLQTHDDCLYCRKCI 214          
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A7S4DPM3_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DPM3_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 1.350e-17
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 0
Query:  124 MEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSVC 224
            M ++ L+ELG  IG VKQ+ W  +A   +A LP  +                  KCLVC CEYEAGE L  LPC H +H  C++ WL +   CPLCKRS+C
Sbjct:  127 MTHEELVELGNRIGSVKQQTWEEKAAQTVANLPTMKFTGEGK--------FCGEKCLVCQCEYEAGEFLKCLPCNHAFHNGCISDWLRQNPECPLCKRSIC 219          
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Match: A0A5A8CA03_CAFRO (RING-type domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CA03_CAFRO)

HSP 1 Score: 86.3 bits (212), Expect = 3.670e-16
Identity = 62/163 (38.04%), Postives = 88/163 (53.99%), Query Frame = 0
Query:   74 ALRAAQGMGGWDEGMGEADIRAMRLAMGEEQEDDGG--------------MGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAG-EELMALPCGHDYHASCVAAWLARADACPLCKR 221
            AL + +G GG D  + E    +++L M E Q  +GG              + + + EEG     M YD LL+LGE +GDV++ERW+ RAPA IA LPR        GA + +    +  C +C CE+EAG E+++ LPCGH++H  C   WL   D CP  +R
Sbjct:  217 ALASMRGQGGAD--VDEDTRLSLQLMMAEVQALNGGDEEQMARLAEAAEVVADADAEEGAAADGMGYDELLQLGEQLGDVRKERWQARAPALIAALPR--------GAWSGSG---EPMCAICRCEWEAGAEDVLKLPCGHEFHEDCGGHWLKDNDTCPRKRR 366          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|88987 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9F1_9STRA1.000e-138100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
K0RAC2_THAOC2.410e-2646.84RING-type domain-containing protein n=1 Tax=Thalas... [more]
D7FY13_ECTSI1.690e-2339.13Ring finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S2YQL4_9STRA5.170e-2136.67Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1E7FQW7_9STRA9.690e-2136.76RING-type domain-containing protein n=1 Tax=Fragil... [more]
A0A7S3Q5R0_9STRA5.150e-1947.10Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4HU52_9STRA6.370e-1937.97Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S3L9V5_9STRA1.970e-1846.67Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4DPM3_9EUKA1.350e-1743.56Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A5A8CA03_CAFRO3.670e-1638.04RING-type domain-containing protein n=4 Tax=Cafete... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..120
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 179..220
e-value: 1.90502E-15
score: 65.7861
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 175..223
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 179..219
e-value: 5.9E-7
score: 39.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 178..220
e-value: 2.6E-11
score: 43.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 179..220
score: 11.928664
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 150..224
e-value: 2.3E-16
score: 60.7
IPR045191E3 ubiquitin-protein ligase MBR1/2-likePANTHERPTHR22937E3 UBIQUITIN-PROTEIN LIGASE RNF165coord: 93..223

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:648076..650036 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|88987mRNA_10588Tribonema minus UTEX_B_3156 mRNAContig_74 647997..650075 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|88987|CE88986_32 ID=Trimin1|88987|CE88986_32|Name=jgi.p|Trimin1|88987|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=226bp
MSSPSPEGLACIGRTFTSAGGSAPGTPEPAPKSARSSGETEEERVMRELQ
ESEALARELMESEALASYQAGMDALRAAQGMGGWDEGMGEADIRAMRLAM
GEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPA
AIARLPRKRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHD
YHASCVAAWLARADACPLCKRSVCG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR045191MBR1/2-like