mRNA_1052 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|346375
Unique Name	mRNA_1052
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|346375 vs. uniprot
Match: A0A836CRJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRJ9_9STRA)

HSP 1 Score: 225 bits (573), Expect = 3.490e-70
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1

Query:    1 MAAQDDARDTVQDQVDVLPQLGDVNEGTDIQQLRAAIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERMHLEMRRNRTRAINFQAALSNQERIYSLPDANGAWPSNFPGTYAAVCALSHGECDALLAAYELPPVEGEPLHGKVKRLSSFITVGS 606
            MAAQDDARDTVQDQVDVLPQLGDVNEGTDIQQLRAAIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERMHLEMRRNRTRAINFQAALSNQERIYSLPDANGAWPSNFPGTYAAVCALSHGECDALLAAYELPPVEGEPLHGKVKRLSSFITVGS
Sbjct:    1 MAAQDDARDTVQDQVDVLPQLGDVNEGTDIQQLRAAIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERMHLEMRRNRTRAINFQAALSNQERIYSLPDANGAWPSNFPGTYAAVCALSHGECDALLAAYELPPVEGEPLHGKVKRLSSFITVGS 202

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|346375 vs. uniprot

BLAST of jgi.p|Trimin1|346375 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CRJ9_9STRA	3.490e-70	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_1	contig	Contig_1:863113..865116 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|346375\|estExt_Genemark1.C_Ctg_10143
Hectar predicted targeting category	other localisation
TranscriptId	346697
Track	FilteredModels1
ProteinId	346375

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|346375	gene_1052	Tribonema minus UTEX_B_3156	gene	Contig_1 863113..865116 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_1052_1	exon_1052_1	Tribonema minus UTEX_B_3156	exon	Contig_1 863113..863760 +
exon_1052_2	exon_1052_2	Tribonema minus UTEX_B_3156	exon	Contig_1 864856..865116 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_1052	CDS_1052	Tribonema minus UTEX_B_3156	CDS	Contig_1 863113..863721 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_1052	UTR3_1052	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_1 863722..863760 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|346375	Trimin1\|346375\|estExt_Genemark1.C_Ctg_10143	Tribonema minus UTEX_B_3156	polypeptide	Contig_1 863113..863721 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_1:863113..865116+
coding sequence from alignment at Contig_1:863113..865116+

spliced messenger RNA

>mRNA_1052 ID=mRNA_1052|Name=jgi.p|Trimin1|346375|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=909bp|location=Sequence derived from alignment at Contig_1:863113..865116+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCACAGGACGATGCTCGGGACACCGTGCAGGATCAGGTAGATGT
GCTGCCACAGCTGGGTGATGTCAACGAAGGCACAGACATACAGCAACTTC
GTGCTGCCATCGACCAGCTGGCGAGGTCTGTGCAGGACTTTCAGCAGACC
CAACAGCAGATGCAGCAGACGCTGCAGCAGATGCTGCAGACGGAGCAGCA
GATGCTGCAGACGGAGCAGCACATGCAGCAGATGCTTCAGCAAATGCAAG
AGATCCAGCAGCCCATGCTGCAATCGATGGTGACTTTGACAGAGCGCATG
CAGGGAGTCGAGGTGCGCCTAGGCGGCGTCGACGGAAGGCTTGAGAGGAT
GCATCTGGAAATGAGGCGCAACCGCACTCGTGCAATCAACTTCCAGGCAG
CGCTCAGCAACCAAGAGCGTATCTATTCCCTGCCGGACGCAAACGGTGCT
TGGCCGTCCAATTTCCCAGGCACATATGCTGCGGTATGCGCGCTCAGCCA
CGGTGAGTGCGATGCGCTGCTGGCTGCTTACGAGCTACCGCCCGTCGAGG
GCGAACCTCTGCATGGCAAGGTCAAGCGCCTGTCATCATTCATCACCGTG
GGATCATAGGCTCCGCGCGGCTGGCGAAGGACTTGCGGGCCGCCACAGGC
ACTGCTAGGAGCCCACAACAAGTTCACAGGGGGGTGAAGGGCATCGCCCA
GGCATACAGCGCTGTCCGCGTTGCCGCTTCTGGGACTGCCGTCAGAGTCG
ACCAGAATTGGCTAGGGACTATGGCCGGCATGCGCACAGACGGATGGAGT
TGTCTTTGAAACGTGAAGACACAACTGCGCGTAATTTCAGCGTCATGTTG
AGCGTGATGGCGCACGAGTGCTGCACGATCATGCAGCATGCACGCAGCTG
AGAAGAAGC

protein sequence of jgi.p|Trimin1|346375

>Trimin1|346375|estExt_Genemark1.C_Ctg_10143 ID=Trimin1|346375|estExt_Genemark1.C_Ctg_10143|Name=jgi.p|Trimin1|346375|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=203bp
MAAQDDARDTVQDQVDVLPQLGDVNEGTDIQQLRAAIDQLARSVQDFQQT
QQQMQQTLQQMLQTEQQMLQTEQHMQQMLQQMQEIQQPMLQSMVTLTERM
QGVEVRLGGVDGRLERMHLEMRRNRTRAINFQAALSNQERIYSLPDANGA
WPSNFPGTYAAVCALSHGECDALLAAYELPPVEGEPLHGKVKRLSSFITV
GS*

mRNA from alignment at Contig_1:863113..865116+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1052 ID=mRNA_1052|Name=jgi.p|Trimin1|346375|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2004bp|location=Sequence derived from alignment at Contig_1:863113..865116+ (Tribonema minus UTEX_B_3156 )
ATGGCAGCACAGGACGATGCTCGGGACACCGTGCAGGATCAGGTAGATGT
GCTGCCACAGCTGGGTGATGTCAACGAAGGCACAGACATACAGCAACTTC
GTGCTGCCATCGACCAGCTGGCGAGGTCTGTGCAGGACTTTCAGCAGACC
CAACAGCAGATGCAGCAGACGCTGCAGCAGATGCTGCAGACGGAGCAGCA
GATGCTGCAGACGGAGCAGCACATGCAGCAGATGCTTCAGCAAATGCAAG
AGATCCAGCAGCCCATGCTGCAATCGATGGTGACTTTGACAGAGCGCATG
CAGGGAGTCGAGGTGCGCCTAGGCGGCGTCGACGGAAGGCTTGAGAGGAT
GCATCTGGAAATGAGGCGCAACCGCACTCGTGCAATCAACTTCCAGGCAG
CGCTCAGCAACCAAGAGCGTATCTATTCCCTGCCGGACGCAAACGGTGCT
TGGCCGTCCAATTTCCCAGGCACATATGCTGCGGTATGCGCGCTCAGCCA
CGGTGAGTGCGATGCGCTGCTGGCTGCTTACGAGCTACCGCCCGTCGAGG
GCGAACCTCTGCATGGCAAGGTCAAGCGCCTGTCATCATTCATCACCGTG
GGATCATAGGCTCCGCGCGGCTGGCGAAGGACTTGCGGGCCGCCACAGGT
GAGGCGCGAACTGCAACTTTGACCTCCCGTGTCGTGCCGGGGTGCAACCA
TTTTGCCCTCGCGCAGCAAGGGAGTTTGAGCACTTGGACCCAGTGCCCAG
ACCCACCCTTGCTACAGTGCGTATGCTGCAAGTGTGCCGTGTTGCCCTGA
ATGCTGCAGTACTGCCACTGCGCTGGTGCAGAGGCCCTTTGAGCTCTGCG
CAACACCCTCTGAGTCTGATACTTCTATATCCGAAAACCCTGCCAGTGGC
TATAACGCGGGGGCACCTACCTTACCAAGGGTGCTCGCGCGCCCAAGTGA
CACCGCACCGCAGCATCAACACTGTTACCAAAAGCAGGGTCTCTTGCATA
TCTACAGCAGCAGCTTTCAGCTATAGCATGAATGCTTTCATGACCATGCT
GCAAGCTCACACACATGCAGCCACGCCCGGTTGATGTTATGCTTCCGGTG
CTTGCGATAGCCTGCGTCGGCTGTCGCTTTCCGCTAGCAGACCTGCATGC
TGAAACGTGGTGCACGATTAAACGGCTTTGAGTACACAAAAAAAGCAAAC
TGCCACAAATCCACTTTTCTGCATTTCAAAGTCTGACAAAATATGTCGAG
TGGAGCTGTGATGGGGCATTGGTGTTGGGAACCTGCTGCACCACTTTTGT
AATGAGGATGTGCATCATTCAACACACCTGCGGTGCAGTGTGCTTGGTTT
GAGCCTGCAGATGATTGCAAAGCATCCCGCTGGAAATGCGCGTGATGTCG
CTGCAGCGTGACTCAGTTAAACCTATACTTAGGGCCTGCACGAGTGTGGC
ACTTGGCAGCATGTACCTGTAGACAAAACAGCCTGCCGCATGACCTGGGG
CGCTGAGGTGCCCCACAAACGCCAGCGTCGCCAAATTAGACAGTCGTTGC
TGCACGCTGCTCAGAGTGCACATTGACTTATGACAGTCCCTCAAGGATCT
TAAAGTGAGGGTTAGGATGAGCGTTGACGGTAGCGGCGACCACTTCAAGT
GCAGGTGGGGCTGTTGGGTCAGCACAGTACTCAATATTTGCTGTGCTGAC
CTTTAATTGACCGTCCGCTCTTGCCTCTGTTTTTTTGTCTCAGGCACTGC
TAGGAGCCCACAACAAGTTCACAGGGGGGTGAAGGGCATCGCCCAGGCAT
ACAGCGCTGTCCGCGTTGCCGCTTCTGGGACTGCCGTCAGAGTCGACCAG
AATTGGCTAGGGACTATGGCCGGCATGCGCACAGACGGATGGAGTTGTCT
TTGAAACGTGAAGACACAACTGCGCGTAATTTCAGCGTCATGTTGAGCGT
GATGGCGCACGAGTGCTGCACGATCATGCAGCATGCACGCAGCTGAGAAG
AAGC

Coding sequence (CDS) from alignment at Contig_1:863113..865116+

>mRNA_1052 ID=mRNA_1052|Name=jgi.p|Trimin1|346375|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=609bp|location=Sequence derived from alignment at Contig_1:863113..865116+ (Tribonema minus UTEX_B_3156 )
ATGGCAGCACAGGACGATGCTCGGGACACCGTGCAGGATCAGGTAGATGT
GCTGCCACAGCTGGGTGATGTCAACGAAGGCACAGACATACAGCAACTTC
GTGCTGCCATCGACCAGCTGGCGAGGTCTGTGCAGGACTTTCAGCAGACC
CAACAGCAGATGCAGCAGACGCTGCAGCAGATGCTGCAGACGGAGCAGCA
GATGCTGCAGACGGAGCAGCACATGCAGCAGATGCTTCAGCAAATGCAAG
AGATCCAGCAGCCCATGCTGCAATCGATGGTGACTTTGACAGAGCGCATG
CAGGGAGTCGAGGTGCGCCTAGGCGGCGTCGACGGAAGGCTTGAGAGGAT
GCATCTGGAAATGAGGCGCAACCGCACTCGTGCAATCAACTTCCAGGCAG
CGCTCAGCAACCAAGAGCGTATCTATTCCCTGCCGGACGCAAACGGTGCT
TGGCCGTCCAATTTCCCAGGCACATATGCTGCGGTATGCGCGCTCAGCCA
CGGTGAGTGCGATGCGCTGCTGGCTGCTTACGAGCTACCGCCCGTCGAGG
GCGAACCTCTGCATGGCAAGGTCAAGCGCCTGTCATCATTCATCACCGTG
GGATCATAG