mRNA_10297 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169365
Unique NamemRNA_10297
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: A0A836CAM7_9STRA (Glycosyl hydrolase catalytic core-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAM7_9STRA)

HSP 1 Score: 613 bits (1582), Expect = 1.700e-222
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 1
Query:    1 MLRVPQARRRHRHGHLPQSLLNVVLHTYLTPADPPRCYTSPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNIPPHLRPSITFFPLTWGAKGVRALSADTMAEPGGVLVGFNEPNWHRVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVLGITWMRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREYRKRVCV 873
            MLRVPQARRRHRHGHLPQSLLNVVLHTYLTPADPPRCYTSPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNIPPHLRPSITFFPLTWGAKGVRALSADTMAEPGGVLVGFNEPNWHRVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVLGITWMRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREYRKRVCV
Sbjct:    1 MLRVPQARRRHRHGHLPQSLLNVVLHTYLTPADPPRCYTSPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNIPPHLRPSITFFPLTWGAKGVRALSADTMAEPGGVLVGFNEPNWHRVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVLGITWMRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREYRKRVCV 291          
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: UPI001B30B840 (glycosyl hydrolase n=1 Tax=Hymenobacter terricola TaxID=2819236 RepID=UPI001B30B840)

HSP 1 Score: 106 bits (265), Expect = 2.450e-22
Identity = 97/302 (32.12%), Postives = 137/302 (45.36%), Query Frame = 1
Query:   31 HRHGHLPQSLLNVVLHTYLTPADPPRCYT-SPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNIPP------HLRPSITFFPLTWGAK-GVRALSADTMAE--PGGV--LVGFNEPNW---HRVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVL--GITW------MRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQA-MRNGHPRQQLSFMKQVIPYLENSEDVVYYSWY---NGPRPTARKPAPHGAPTLFGLEPGQLTPLGREY 855
            HR   L   LL+ +L   L    P    T SPKRG+A G   +   DLQALAPG++W+ NWA   ++P       +      + P+ WGA  G   ++A  +A   P G   L+GFNEPN+     + P  AA +W  +   A++ N ++    V    + V+  G+T+      +  F AAC     +  +DYI +H+Y C    L   I E  +    K I +TE ACG        P  Q  +M   + YLE    V  Y+W+   NG  P            L G   GQLT LG+EY
Sbjct:    5 HRFQRLSTHLLSGILAALLAFGSPATAQTRSPKRGLAYGYHSA--ADLQALAPGLSWWYNWA---SVPEAGAAGVYAGLGFDYVPMQWGATLGSGTVTASQLAANIPNGARYLLGFNEPNFLDQANLTPNQAAALWPVLETVARQRNLQLVAPAVNYCGNCVVQNGVTYYSPVQYLDAFFAACP----SCQVDYIAVHTYVCEERYLREKIGELKKY--NKPIWLTEFACGDMPAAQISPAVQQKYMLDAVNYLEKEPAVFRYAWFSGRNGQIPNIN---------LLGAS-GQLTALGQEY 285          
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: UPI0013A57DAF (glycosyl hydrolase n=1 Tax=Hymenobacter nivis TaxID=1850093 RepID=UPI0013A57DAF)

HSP 1 Score: 100 bits (248), Expect = 4.860e-20
Identity = 87/274 (31.75%), Postives = 132/274 (48.18%), Query Frame = 1
Query:  118 SPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNIPP------HLRPSITFFPLTWGAK-GVRALSADTMAE--PGGV--LVGFNEPNW---HRVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVL--GITW------MRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLS------FMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREY 855
            SPKRG+A     +   DLQALAPG +W   W  +T++P       +   ++ + P+ WGA+ G   ++AD +A   P G   L+GFNEPN+     + P  AA +W  +   A++   K+    +      V   G+T+      +  F AAC        +DYI +H+Y C    L   + E V+ +  K I +TE ACG A     P  Q++      +M   + YLEN  D+  YSW++G         P+    L G + GQLT LG++Y
Sbjct:   34 SPKRGLAYDYKSA--ADLQALAPGTSW---WYNYTSVPNASVAGMYGGLAVDYVPIQWGARLGNGPVTADQLAANIPAGTQYLLGFNEPNFLSQSNLTPTQAAAIWPVLQEVARRKKLKLVSPALNYCGGCVQENGVTYYSPTQYLDAFFAACPN----CQVDYIALHTYVCEEQYLRQKVAE-VKKY-NKPIWLTEFACGDA-----PTAQITLAAQKKYMLDAVNYLENEPDIFRYSWFSG----RNNEIPNI--NLLGAD-GQLTALGQQY 284          
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: UPI001436845C (glycosyl hydrolase n=5 Tax=Hymenobacter TaxID=89966 RepID=UPI001436845C)

HSP 1 Score: 99.4 bits (246), Expect = 1.160e-19
Identity = 86/277 (31.05%), Postives = 128/277 (46.21%), Query Frame = 1
Query:  118 SPKRGVAIGMAISHPEDLQALAPGVTWFNNW---------AIFTNIPPHLRPSITFFPLTWGAKGVRA-LSADTMAE--PGGV--LVGFNEPNWH---RVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVL--GITW------MRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLS------FMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREY 855
            S KRG+A G   +   D+QALAPG++W+ NW         +++T +       I + P+ WG     A  +AD +A   P G   L+GFNEPN+     + P  AA +W  +   A++ N K+    V    D V   G T+      +  F AAC     +  +DYI +H+Y C    L   I E  +   GK I +TE +CG       P+ Q++      ++   + YLEN   V  Y+W++G         P+    L G   GQLT LG+ Y
Sbjct:   36 SAKRGIAYGYHSA--ADMQALAPGISWWYNWYSKPEAGAASVYTGL------GIDYVPMQWGRDLDGAPFTADRLAANIPAGAKYLLGFNEPNFRSQANLTPTQAAALWPTLQEVARRKNLKLVSPAVNYCGDCVSENGTTYYSPTQYLDAFFAACP----SCQVDYIAVHTYVCEEQWLRDKIGELKKY--GKPIWLTEFSCGDK-----PQDQITLDVQKRYLTAAVNYLENEPAVFRYAWFSG----RNNEIPNI--NLLGAASGQLTELGQLY 287          
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: A0A519UZD2_9BACT (Carbohydrate-binding protein (Fragment) n=1 Tax=Hymenobacter sp. TaxID=1898978 RepID=A0A519UZD2_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 4.820e-19
Identity = 85/272 (31.25%), Postives = 121/272 (44.49%), Query Frame = 1
Query:  121 PKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNIPPHLRPS-------ITFFPLTW-GAKGVRALSADTMAE--PGGV--LVGFNEPNWH---RVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVL--GITW------MRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQA-MRNGHPRQQLSFMKQVIPYLENSEDVVYYSWY---NGPRPTARKPAPHGAPTLFGLEPGQLTPLGREY 855
            PKRG+A G   +   DLQALAPGV+W+ NWA    +P +   +       I + P+ W G+     ++A  +A   P G   L+GFNEPN+     + P  AA +W  +   A + N  +    V    D V   G T+      +  F AAC     +  +DYI +H+Y C    L   I E  +    K I +TE ACG        P  Q  ++   + YLE    +  Y+W+   NG  P     AP           GQLT LG++Y
Sbjct:   35 PKRGLAYGYHSA--ADLQALAPGVSWWYNWA---PVPDNTGAASVYQGLGIDYVPMQWNGSLNGTTVTASALAGLIPAGAQYLLGFNEPNFRSQANMTPTQAAALWPVLEDVATRRNLSLVSPAVNYCGDCVSENGTTYYTPTQYLDAFFAACP----SCRVDYIAVHTYVCEEQYLRQKIAELKKY--NKPIWLTEFACGDMPAAQITPAVQQKYLLDAVNYLEKEPAIFRYAWFSGRNGQIPNVNLLAPAS---------GQLTALGQQY 286          
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: A0A1I2ARD7_9DELT (Glycosyl hydrolase catalytic core n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I2ARD7_9DELT)

HSP 1 Score: 94.4 bits (233), Expect = 1.120e-18
Identity = 77/257 (29.96%), Postives = 122/257 (47.47%), Query Frame = 1
Query:  115 TSPKRGVAIGMAISHPEDLQALAPGVTWFNNWAI--FTNIPPHLRPSITFFPLTWGAKGVRALSADTMAEPGG-VLVGFNEPNWHR---VEPEFAAEMWGEVIAAAKKYNGKVSEMGVK---ARRDAVLGITWMRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGL-EPGQLTPLGREY 855
            +S KRG+A G   SH  DL ALAPGV+W+ NWA+    ++  +   ++ F P+ WG     +L  D     G   L+ FNEPN+     + P+ AA +W +V A A  +  ++    +       +      W  +F AAC        +D++ +H Y C+  AL + I E  +    + I +TE +C  A  +     Q  +M++ + YLE    V  Y+W++G             PT+  L E G LT LG++Y
Sbjct:   79 SSCKRGIAYGYH-SHA-DLAALAPGVSWWYNWAVPPDPDVGDYQALNVEFVPMLWGGG---SLDQDPPIPEGARYLLAFNEPNFGAQADLTPQEAAALWPQVEAVADAHGLEIVSPALNYCGGDCNKTDPFEWFDEFFAACPG----CRVDHLAVHWYACTRDALTWYIGEMKKY--ERPIWLTEFSCLDA-EDKSVAVQKQYMQEALEYLEAEPSVARYAWFSGRW--------EATPTVDLLGESGALTELGQQY 315          
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: UPI0018CCA256 (glycosyl hydrolase n=1 Tax=Hymenobacter terrenus TaxID=1629124 RepID=UPI0018CCA256)

HSP 1 Score: 91.3 bits (225), Expect = 4.160e-17
Identity = 85/274 (31.02%), Postives = 122/274 (44.53%), Query Frame = 1
Query:  118 SPKRGVAIGMAISHPEDLQALAPGVTWFNNWAI-----FTNIPPHLRPSITFFPLTWGA------KGVRALSADTMAE--PGGV--LVGFNEPNW---HRVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVL--GITW------MRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHP-RQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGL-EPGQLTPLGREY 855
            S KRG+A G   +   D+QALAPG++W+ NWA        N+   L   I + P+ WG       +     SAD +A   P G   L+GFNEPN+     + P  AA +W  +   A++ N K+    V      V   G T+      +  F AAC     T  +DYI +H+Y C    L   I E  +    K I +TE +CG    +      Q  ++   + YLEN   V  Y+W++G          +  P +  L   GQLT LG+ Y
Sbjct:   34 SAKRGLAYGYHSA--ADMQALAPGISWWYNWAPRPDAGVANLYQGL--GIDYVPMQWGRYRDGNNQDGSTFSADELAANIPAGTNYLLGFNEPNFLSQANLTPSQAAALWPRLQEVARRKNLKLVSPAVNYCGGCVSENGTTYYSPTQYLDAFFAACP----TCQVDYIAVHTYVCEERYLRDKIAELKKY--NKPIWLTEFSCGDIPTDQITLNTQKGYLAAAVNYLENEPAVFRYAWFSG--------RDNQIPFINLLGNSGQLTELGQLY 289          
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: A0A654E3B8_9BACT (CBM6 domain-containing protein n=1 Tax=Marinoscillum sp. 108 TaxID=2653151 RepID=A0A654E3B8_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 1.720e-16
Identity = 78/265 (29.43%), Postives = 120/265 (45.28%), Query Frame = 1
Query:  118 SPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNI---PPHLRPSITFFPLTWGA-----KGVRALSADTMAEPGGVLVGFNEPNWH---RVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVLG--------ITWMRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREY 855
            S KRG  +G      +DL+ALAPGV+W+ NW    +      + +  + + P+ W       + +  L A+   E    L+GFNEPN+     + P  AA  W E+   A +++ K+    V    + V          I ++ DF AAC+       +DY+ IH Y C       ++ +       + I +TEIAC     +    QQ S++  V+  +EN  DV  Y+W+ G     R   PH A  L G   G+LT LG+ Y
Sbjct:   24 SEKRG--LGYGYHSQKDLEALAPGVSWWYNWFYQPDAGVRDTYQQSGVAYVPMAWNGDFNKTETINFLEANPEVE---YLLGFNEPNFKDQANMTPSQAAAKWPELEELASRFDLKLIGPAVNYCGNCVSENGTTYSDPIVYLDDFFAACQ----DCQVDYVAIHWYGCGGFDWYLDLFKKYN----RPIWVTEIACWD-QDDISEDQQKSYLINVVDQMENDPDVFRYAWFVG-----RGDGPHIA-LLAG--DGELTELGQLY 266          
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: UPI0009DF1B4F (glycoside hydrolase family protein n=1 Tax=Massilia sp. 9096 TaxID=1500894 RepID=UPI0009DF1B4F)

HSP 1 Score: 87.0 bits (214), Expect = 4.840e-16
Identity = 85/265 (32.08%), Postives = 125/265 (47.17%), Query Frame = 1
Query:  118 SPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTN----IPPHLRPSITFFPLTWGAK-GVRALSADTMAEPGGVLVGFNEPNWH---RVEPEFAAEMWG--EVIAAAK--KYNGKVSEMGVKARRDAVLGITWMRDFIAACERLYGTAA--IDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHP-----RQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREY 855
            S KRG+A  +A +   D +ALAPGV+W+ NWA   N    +    +  + +FP+ W       A++A   A     L+  NEPN      + P+ AA++W   E IAAA   K  G     G  A       +TW+  F AA +   G  A  IDY+  H Y     +    ++++     GK I +TE+A   +  +G       RQQ   MK ++   E  +DV  Y+W+ G R T+    PH + +L G   GQLT LG+ Y
Sbjct:   66 SVKRGIAYDLASA--ADFKALAPGVSWWYNWAAKPNAAAPVDALTQYGMDYFPMLWNDNFDAAAITAYIQAHGVKYLLLLNEPNLTDQASMTPQKAAQLWPRYEAIAAATGVKLVGPAMNWGTLAGYSDP--VTWLDAFYAAYQAANGNRAPHIDYLAFHWYDYGLASQLDRLKKY-----GKSIWVTEMANWHSQNDGAQIDTLARQQAQ-MKDMVATCEARDDVFRYAWFTG-RMTSD---PHFS-SLLGAN-GQLTALGQLY 314          
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: D7FKU0_ECTSI (Putative serine rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU0_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.010e-15
Identity = 67/237 (28.27%), Postives = 106/237 (44.73%), Query Frame = 1
Query:   97 DPPRCYTSPKRGVAIGMAISHPEDLQALAPGVTWFNNW--AIFTNIPPHLRPS--ITFFPLTWGAKGVRALSADTMAEPG--GVLVGFNEPNWH---RVEPEFAAEMWGEVIAAAKKYNGKVSEMGVK------ARRDAVLGITWMRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLSFMKQVIPYLENSEDVVYYSWYNG 762
            +P  C+   KRGV+        +DL ALAPG++W+ NW  AI  +     + S    + P+ WG K + +     +A  G    ++GFNEPN+     + P+ AA +W  V + A     ++    V        + D      W+ DF +ACE    TA    I +H YTC    L+  +  +++   G  I ITE AC       +   Q +++   +  LE    V  Y+W+ G
Sbjct:  125 EPTECHG--KRGVSFD--FKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEKDLDSTRLANLASLGQSSHMLGFNEPNFGSQANLTPQEAAALWSTVKSEAATLGAEIVSPAVNFCGGDCTKEDPY---EWLDDFFSACEGCDVTA----IAVHIYTCEVRYLNKILHGYLKY--GLPIWITEFACADDAAYMNEASQAAYLADALTLLELHPSVARYAWFTG 348          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAM7_9STRA1.700e-222100.00Glycosyl hydrolase catalytic core-domain-containin... [more]
UPI001B30B8402.450e-2232.12glycosyl hydrolase n=1 Tax=Hymenobacter terricola ... [more]
UPI0013A57DAF4.860e-2031.75glycosyl hydrolase n=1 Tax=Hymenobacter nivis TaxI... [more]
UPI001436845C1.160e-1931.05glycosyl hydrolase n=5 Tax=Hymenobacter TaxID=8996... [more]
A0A519UZD2_9BACT4.820e-1931.25Carbohydrate-binding protein (Fragment) n=1 Tax=Hy... [more]
A0A1I2ARD7_9DELT1.120e-1829.96Glycosyl hydrolase catalytic core n=1 Tax=Nannocys... [more]
UPI0018CCA2564.160e-1731.02glycosyl hydrolase n=1 Tax=Hymenobacter terrenus T... [more]
A0A654E3B8_9BACT1.720e-1629.43CBM6 domain-containing protein n=1 Tax=Marinoscill... [more]
UPI0009DF1B4F4.840e-1632.08glycoside hydrolase family protein n=1 Tax=Massili... [more]
D7FKU0_ECTSI1.010e-1528.27Putative serine rich protein n=2 Tax=Ectocarpus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_63contigContig_63:407338..408285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169365|e_gw1.63.117.1
DescriptionGlycosyl hydrolase catalytic core
COG categoryG
Max annot lvl28221|Deltaproteobacteria
EggNOG OGsCOG3291@1|root,COG3291@2|Bacteria,1QX66@1224|Proteobacteria,437XJ@68525|delta/epsilon subdivisions,2X37H@28221|Deltaproteobacteria,2YUQ0@29|Myxococcales
Evalue7.2e-22
Seed ortholog1192034.CAP_5347
Hectar predicted targeting categoryother localisation
TranscriptId169687
TrackFilteredModels1
ProteinId169365
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169365gene_10297Tribonema minus UTEX_B_3156 geneContig_63 407338..408285 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10297_1exon_10297_1Tribonema minus UTEX_B_3156 exonContig_63 407338..407762 +
exon_10297_2exon_10297_2Tribonema minus UTEX_B_3156 exonContig_63 407835..408285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10297CDS_10297Tribonema minus UTEX_B_3156 CDSContig_63 407338..407762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169365Trimin1|169365|e_gw1.63.117.1Tribonema minus UTEX_B_3156 polypeptideContig_63 407338..408285 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10297 ID=mRNA_10297|Name=jgi.p|Trimin1|169365|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=876bp|location=Sequence derived from alignment at Contig_63:407338..408285+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGCGTCCCCCAAGCGCGGCGTCGCCATCGGCATGGCCATCTCCC
ACAATCGCTTCTAAACGTTGTACTACATACCTACCTGACCCCCGCAGACC
CCCCGCGCTGCTACACGTCCCCCAAGCGCGGCGTCGCCATCGGCATGGCC
ATCTCCCACCCCGAGGACCTGCAGGCGCTCGCCCCCGGCGTCACATGGTT
CAACAACTGGGCCATCTTCACCAACATCCCCCCGCACCTGCGCCCCTCCA
TCACCTTCTTCCCCCTGACCTGGGGGGCCAAGGGGGTGCGCGCGCTGAGC
GCTGACACGATGGCGGAGCCGGGGGGCGTCCTCGTGGGCTTCAATGAGCC
AAACTGGCACCGCGTCGAGCCGGAATTTGCGGCGGAGATGTGGGGCGAGG
TGATCGCTGCCGCCAAGAAGTACAACGGAAAGGTGTCCGAGATGGGCGTG
AAGGCGCGGCGCGATGCCGTCCTGGGCATCACGTGGATGCGCGACTTCAT
CGCGGCGTGCGAGAGGCTGTACGGCACGGCGGCGATCGACTACATCAACA
TCCACTCGTACACGTGCAGCACGCACGCGCTGGACTTCAACATCCGCGAG
CACGTGCGCGCGTTCCCCGGCAAGAAGATCATCATCACGGAGATAGCGTG
CGGCCAGGCGATGCGTAATGGCCATCCGCGGCAGCAGCTGTCGTTCATGA
AGCAGGTGATCCCGTACCTTGAGAACTCAGAGGACGTTGTCTACTACAGC
TGGTACAATGGCCCCAGGCCCACTGCACGCAAGCCGGCGCCGCACGGGGC
CCCTACGCTGTTCGGACTCGAGCCAGGTCAGCTGACACCACTAGGGCGTG
AGTACCGGAAGAGGGTTTGTGTGTGA
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protein sequence of jgi.p|Trimin1|169365

>Trimin1|169365|e_gw1.63.117.1 ID=Trimin1|169365|e_gw1.63.117.1|Name=jgi.p|Trimin1|169365|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=292bp
MLRVPQARRRHRHGHLPQSLLNVVLHTYLTPADPPRCYTSPKRGVAIGMA
ISHPEDLQALAPGVTWFNNWAIFTNIPPHLRPSITFFPLTWGAKGVRALS
ADTMAEPGGVLVGFNEPNWHRVEPEFAAEMWGEVIAAAKKYNGKVSEMGV
KARRDAVLGITWMRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIRE
HVRAFPGKKIIITEIACGQAMRNGHPRQQLSFMKQVIPYLENSEDVVYYS
WYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREYRKRVCV*
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mRNA from alignment at Contig_63:407338..408285+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10297 ID=mRNA_10297|Name=jgi.p|Trimin1|169365|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=948bp|location=Sequence derived from alignment at Contig_63:407338..408285+ (Tribonema minus UTEX_B_3156 )
ATGCTACGCGTCCCCCAAGCGCGGCGTCGCCATCGGCATGGCCATCTCCC ACAATCGCTTCTAAACGTTGTACTACATACCTACCTGACCCCCGCAGACC CCCCGCGCTGCTACACGTCCCCCAAGCGCGGCGTCGCCATCGGCATGGCC ATCTCCCACCCCGAGGACCTGCAGGCGCTCGCCCCCGGCGTCACATGGTT CAACAACTGGGCCATCTTCACCAACATCCCCCCGCACCTGCGCCCCTCCA TCACCTTCTTCCCCCTGACCTGGGGGGCCAAGGGGGTGCGCGCGCTGAGC GCTGACACGATGGCGGAGCCGGGGGGCGTCCTCGTGGGCTTCAATGAGCC AAACTGGCACCGCGTCGAGCCGGAATTTGCGGCGGAGATGTGGGGCGAGG TGATCGCTGCCGCCAAGAAGTACAAGTTGAAGTTGGCGAGTCCGTCCGCG ACGGGCCCGATGGGCTTCTTCCCCGCGCAGGGGCTGGCGGACGAGAGCGG AAAGGTGTCCGAGATGGGCGTGAAGGCGCGGCGCGATGCCGTCCTGGGCA TCACGTGGATGCGCGACTTCATCGCGGCGTGCGAGAGGCTGTACGGCACG GCGGCGATCGACTACATCAACATCCACTCGTACACGTGCAGCACGCACGC GCTGGACTTCAACATCCGCGAGCACGTGCGCGCGTTCCCCGGCAAGAAGA TCATCATCACGGAGATAGCGTGCGGCCAGGCGATGCGTAATGGCCATCCG CGGCAGCAGCTGTCGTTCATGAAGCAGGTGATCCCGTACCTTGAGAACTC AGAGGACGTTGTCTACTACAGCTGGTACAATGGCCCCAGGCCCACTGCAC GCAAGCCGGCGCCGCACGGGGCCCCTACGCTGTTCGGACTCGAGCCAGGT CAGCTGACACCACTAGGGCGTGAGTACCGGAAGAGGGTTTGTGTGTGA
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Coding sequence (CDS) from alignment at Contig_63:407338..408285+

>mRNA_10297 ID=mRNA_10297|Name=jgi.p|Trimin1|169365|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=876bp|location=Sequence derived from alignment at Contig_63:407338..408285+ (Tribonema minus UTEX_B_3156 )
ATGCTACGCGTCCCCCAAGCGCGGCGTCGCCATCGGCATGGCCATCTCCC
ACAATCGCTTCTAAACGTTGTACTACATACCTACCTGACCCCCGCAGACC
CCCCGCGCTGCTACACGTCCCCCAAGCGCGGCGTCGCCATCGGCATGGCC
ATCTCCCACCCCGAGGACCTGCAGGCGCTCGCCCCCGGCGTCACATGGTT
CAACAACTGGGCCATCTTCACCAACATCCCCCCGCACCTGCGCCCCTCCA
TCACCTTCTTCCCCCTGACCTGGGGGGCCAAGGGGGTGCGCGCGCTGAGC
GCTGACACGATGGCGGAGCCGGGGGGCGTCCTCGTGGGCTTCAATGAGCC
AAACTGGCACCGCGTCGAGCCGGAATTTGCGGCGGAGATGTGGGGCGAGG
TGATCGCTGCCGCCAAGAAGTACAACGGAAAGGTGTCCGAGATGGGCGTG
AAGGCGCGGCGCGATGCCGTCCTGGGCATCACGTGGATGCGCGACTTCAT
CGCGGCGTGCGAGAGGCTGTACGGCACGGCGGCGATCGACTACATCAACA
TCCACTCGTACACGTGCAGCACGCACGCGCTGGACTTCAACATCCGCGAG
CACGTGCGCGCGTTCCCCGGCAAGAAGATCATCATCACGGAGATAGCGTG
CGGCCAGGCGATGCGTAATGGCCATCCGCGGCAGCAGCTGTCGTTCATGA
AGCAGGTGATCCCGTACCTTGAGAACTCAGAGGACGTTGTCTACTACAGC
TGGTACAATGGCCCCAGGCCCACTGCACGCAAGCCGGCGCCGCACGGGGC
CCCTACGCTGTTCGGACTCGAGCCAGGTCAGCTGACACCACTAGGGCGTG
AGTACCGGAAGAGGGTTTGTGTGTGA
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