mRNA_10297 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: A0A836CAM7_9STRA (Glycosyl hydrolase catalytic core-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAM7_9STRA) HSP 1 Score: 613 bits (1582), Expect = 1.700e-222 Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 1 Query: 1 MLRVPQARRRHRHGHLPQSLLNVVLHTYLTPADPPRCYTSPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNIPPHLRPSITFFPLTWGAKGVRALSADTMAEPGGVLVGFNEPNWHRVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVLGITWMRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREYRKRVCV 873 MLRVPQARRRHRHGHLPQSLLNVVLHTYLTPADPPRCYTSPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNIPPHLRPSITFFPLTWGAKGVRALSADTMAEPGGVLVGFNEPNWHRVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVLGITWMRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREYRKRVCV Sbjct: 1 MLRVPQARRRHRHGHLPQSLLNVVLHTYLTPADPPRCYTSPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNIPPHLRPSITFFPLTWGAKGVRALSADTMAEPGGVLVGFNEPNWHRVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVLGITWMRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREYRKRVCV 291
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: UPI001B30B840 (glycosyl hydrolase n=1 Tax=Hymenobacter terricola TaxID=2819236 RepID=UPI001B30B840) HSP 1 Score: 106 bits (265), Expect = 2.450e-22 Identity = 97/302 (32.12%), Postives = 137/302 (45.36%), Query Frame = 1 Query: 31 HRHGHLPQSLLNVVLHTYLTPADPPRCYT-SPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNIPP------HLRPSITFFPLTWGAK-GVRALSADTMAE--PGGV--LVGFNEPNW---HRVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVL--GITW------MRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQA-MRNGHPRQQLSFMKQVIPYLENSEDVVYYSWY---NGPRPTARKPAPHGAPTLFGLEPGQLTPLGREY 855 HR L LL+ +L L P T SPKRG+A G + DLQALAPG++W+ NWA ++P + + P+ WGA G ++A +A P G L+GFNEPN+ + P AA +W + A++ N ++ V + V+ G+T+ + F AAC + +DYI +H+Y C L I E + K I +TE ACG P Q +M + YLE V Y+W+ NG P L G GQLT LG+EY Sbjct: 5 HRFQRLSTHLLSGILAALLAFGSPATAQTRSPKRGLAYGYHSA--ADLQALAPGLSWWYNWA---SVPEAGAAGVYAGLGFDYVPMQWGATLGSGTVTASQLAANIPNGARYLLGFNEPNFLDQANLTPNQAAALWPVLETVARQRNLQLVAPAVNYCGNCVVQNGVTYYSPVQYLDAFFAACP----SCQVDYIAVHTYVCEERYLREKIGELKKY--NKPIWLTEFACGDMPAAQISPAVQQKYMLDAVNYLEKEPAVFRYAWFSGRNGQIPNIN---------LLGAS-GQLTALGQEY 285
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: UPI0013A57DAF (glycosyl hydrolase n=1 Tax=Hymenobacter nivis TaxID=1850093 RepID=UPI0013A57DAF) HSP 1 Score: 100 bits (248), Expect = 4.860e-20 Identity = 87/274 (31.75%), Postives = 132/274 (48.18%), Query Frame = 1 Query: 118 SPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNIPP------HLRPSITFFPLTWGAK-GVRALSADTMAE--PGGV--LVGFNEPNW---HRVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVL--GITW------MRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLS------FMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREY 855 SPKRG+A + DLQALAPG +W W +T++P + ++ + P+ WGA+ G ++AD +A P G L+GFNEPN+ + P AA +W + A++ K+ + V G+T+ + F AAC +DYI +H+Y C L + E V+ + K I +TE ACG A P Q++ +M + YLEN D+ YSW++G P+ L G + GQLT LG++Y Sbjct: 34 SPKRGLAYDYKSA--ADLQALAPGTSW---WYNYTSVPNASVAGMYGGLAVDYVPIQWGARLGNGPVTADQLAANIPAGTQYLLGFNEPNFLSQSNLTPTQAAAIWPVLQEVARRKKLKLVSPALNYCGGCVQENGVTYYSPTQYLDAFFAACPN----CQVDYIALHTYVCEEQYLRQKVAE-VKKY-NKPIWLTEFACGDA-----PTAQITLAAQKKYMLDAVNYLENEPDIFRYSWFSG----RNNEIPNI--NLLGAD-GQLTALGQQY 284
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: UPI001436845C (glycosyl hydrolase n=5 Tax=Hymenobacter TaxID=89966 RepID=UPI001436845C) HSP 1 Score: 99.4 bits (246), Expect = 1.160e-19 Identity = 86/277 (31.05%), Postives = 128/277 (46.21%), Query Frame = 1 Query: 118 SPKRGVAIGMAISHPEDLQALAPGVTWFNNW---------AIFTNIPPHLRPSITFFPLTWGAKGVRA-LSADTMAE--PGGV--LVGFNEPNWH---RVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVL--GITW------MRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLS------FMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREY 855 S KRG+A G + D+QALAPG++W+ NW +++T + I + P+ WG A +AD +A P G L+GFNEPN+ + P AA +W + A++ N K+ V D V G T+ + F AAC + +DYI +H+Y C L I E + GK I +TE +CG P+ Q++ ++ + YLEN V Y+W++G P+ L G GQLT LG+ Y Sbjct: 36 SAKRGIAYGYHSA--ADMQALAPGISWWYNWYSKPEAGAASVYTGL------GIDYVPMQWGRDLDGAPFTADRLAANIPAGAKYLLGFNEPNFRSQANLTPTQAAALWPTLQEVARRKNLKLVSPAVNYCGDCVSENGTTYYSPTQYLDAFFAACP----SCQVDYIAVHTYVCEEQWLRDKIGELKKY--GKPIWLTEFSCGDK-----PQDQITLDVQKRYLTAAVNYLENEPAVFRYAWFSG----RNNEIPNI--NLLGAASGQLTELGQLY 287
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: A0A519UZD2_9BACT (Carbohydrate-binding protein (Fragment) n=1 Tax=Hymenobacter sp. TaxID=1898978 RepID=A0A519UZD2_9BACT) HSP 1 Score: 94.7 bits (234), Expect = 4.820e-19 Identity = 85/272 (31.25%), Postives = 121/272 (44.49%), Query Frame = 1 Query: 121 PKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNIPPHLRPS-------ITFFPLTW-GAKGVRALSADTMAE--PGGV--LVGFNEPNWH---RVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVL--GITW------MRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQA-MRNGHPRQQLSFMKQVIPYLENSEDVVYYSWY---NGPRPTARKPAPHGAPTLFGLEPGQLTPLGREY 855 PKRG+A G + DLQALAPGV+W+ NWA +P + + I + P+ W G+ ++A +A P G L+GFNEPN+ + P AA +W + A + N + V D V G T+ + F AAC + +DYI +H+Y C L I E + K I +TE ACG P Q ++ + YLE + Y+W+ NG P AP GQLT LG++Y Sbjct: 35 PKRGLAYGYHSA--ADLQALAPGVSWWYNWA---PVPDNTGAASVYQGLGIDYVPMQWNGSLNGTTVTASALAGLIPAGAQYLLGFNEPNFRSQANMTPTQAAALWPVLEDVATRRNLSLVSPAVNYCGDCVSENGTTYYTPTQYLDAFFAACP----SCRVDYIAVHTYVCEEQYLRQKIAELKKY--NKPIWLTEFACGDMPAAQITPAVQQKYLLDAVNYLEKEPAIFRYAWFSGRNGQIPNVNLLAPAS---------GQLTALGQQY 286
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: A0A1I2ARD7_9DELT (Glycosyl hydrolase catalytic core n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I2ARD7_9DELT) HSP 1 Score: 94.4 bits (233), Expect = 1.120e-18 Identity = 77/257 (29.96%), Postives = 122/257 (47.47%), Query Frame = 1 Query: 115 TSPKRGVAIGMAISHPEDLQALAPGVTWFNNWAI--FTNIPPHLRPSITFFPLTWGAKGVRALSADTMAEPGG-VLVGFNEPNWHR---VEPEFAAEMWGEVIAAAKKYNGKVSEMGVK---ARRDAVLGITWMRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGL-EPGQLTPLGREY 855 +S KRG+A G SH DL ALAPGV+W+ NWA+ ++ + ++ F P+ WG +L D G L+ FNEPN+ + P+ AA +W +V A A + ++ + + W +F AAC +D++ +H Y C+ AL + I E + + I +TE +C A + Q +M++ + YLE V Y+W++G PT+ L E G LT LG++Y Sbjct: 79 SSCKRGIAYGYH-SHA-DLAALAPGVSWWYNWAVPPDPDVGDYQALNVEFVPMLWGGG---SLDQDPPIPEGARYLLAFNEPNFGAQADLTPQEAAALWPQVEAVADAHGLEIVSPALNYCGGDCNKTDPFEWFDEFFAACPG----CRVDHLAVHWYACTRDALTWYIGEMKKY--ERPIWLTEFSCLDA-EDKSVAVQKQYMQEALEYLEAEPSVARYAWFSGRW--------EATPTVDLLGESGALTELGQQY 315
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: UPI0018CCA256 (glycosyl hydrolase n=1 Tax=Hymenobacter terrenus TaxID=1629124 RepID=UPI0018CCA256) HSP 1 Score: 91.3 bits (225), Expect = 4.160e-17 Identity = 85/274 (31.02%), Postives = 122/274 (44.53%), Query Frame = 1 Query: 118 SPKRGVAIGMAISHPEDLQALAPGVTWFNNWAI-----FTNIPPHLRPSITFFPLTWGA------KGVRALSADTMAE--PGGV--LVGFNEPNW---HRVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVL--GITW------MRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHP-RQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGL-EPGQLTPLGREY 855 S KRG+A G + D+QALAPG++W+ NWA N+ L I + P+ WG + SAD +A P G L+GFNEPN+ + P AA +W + A++ N K+ V V G T+ + F AAC T +DYI +H+Y C L I E + K I +TE +CG + Q ++ + YLEN V Y+W++G + P + L GQLT LG+ Y Sbjct: 34 SAKRGLAYGYHSA--ADMQALAPGISWWYNWAPRPDAGVANLYQGL--GIDYVPMQWGRYRDGNNQDGSTFSADELAANIPAGTNYLLGFNEPNFLSQANLTPSQAAALWPRLQEVARRKNLKLVSPAVNYCGGCVSENGTTYYSPTQYLDAFFAACP----TCQVDYIAVHTYVCEERYLRDKIAELKKY--NKPIWLTEFSCGDIPTDQITLNTQKGYLAAAVNYLENEPAVFRYAWFSG--------RDNQIPFINLLGNSGQLTELGQLY 289
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: A0A654E3B8_9BACT (CBM6 domain-containing protein n=1 Tax=Marinoscillum sp. 108 TaxID=2653151 RepID=A0A654E3B8_9BACT) HSP 1 Score: 89.7 bits (221), Expect = 1.720e-16 Identity = 78/265 (29.43%), Postives = 120/265 (45.28%), Query Frame = 1 Query: 118 SPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTNI---PPHLRPSITFFPLTWGA-----KGVRALSADTMAEPGGVLVGFNEPNWH---RVEPEFAAEMWGEVIAAAKKYNGKVSEMGVKARRDAVLG--------ITWMRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREY 855 S KRG +G +DL+ALAPGV+W+ NW + + + + + P+ W + + L A+ E L+GFNEPN+ + P AA W E+ A +++ K+ V + V I ++ DF AAC+ +DY+ IH Y C ++ + + I +TEIAC + QQ S++ V+ +EN DV Y+W+ G R PH A L G G+LT LG+ Y Sbjct: 24 SEKRG--LGYGYHSQKDLEALAPGVSWWYNWFYQPDAGVRDTYQQSGVAYVPMAWNGDFNKTETINFLEANPEVE---YLLGFNEPNFKDQANMTPSQAAAKWPELEELASRFDLKLIGPAVNYCGNCVSENGTTYSDPIVYLDDFFAACQ----DCQVDYVAIHWYGCGGFDWYLDLFKKYN----RPIWVTEIACWD-QDDISEDQQKSYLINVVDQMENDPDVFRYAWFVG-----RGDGPHIA-LLAG--DGELTELGQLY 266
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: UPI0009DF1B4F (glycoside hydrolase family protein n=1 Tax=Massilia sp. 9096 TaxID=1500894 RepID=UPI0009DF1B4F) HSP 1 Score: 87.0 bits (214), Expect = 4.840e-16 Identity = 85/265 (32.08%), Postives = 125/265 (47.17%), Query Frame = 1 Query: 118 SPKRGVAIGMAISHPEDLQALAPGVTWFNNWAIFTN----IPPHLRPSITFFPLTWGAK-GVRALSADTMAEPGGVLVGFNEPNWH---RVEPEFAAEMWG--EVIAAAK--KYNGKVSEMGVKARRDAVLGITWMRDFIAACERLYGTAA--IDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHP-----RQQLSFMKQVIPYLENSEDVVYYSWYNGPRPTARKPAPHGAPTLFGLEPGQLTPLGREY 855 S KRG+A +A + D +ALAPGV+W+ NWA N + + + +FP+ W A++A A L+ NEPN + P+ AA++W E IAAA K G G A +TW+ F AA + G A IDY+ H Y + ++++ GK I +TE+A + +G RQQ MK ++ E +DV Y+W+ G R T+ PH + +L G GQLT LG+ Y Sbjct: 66 SVKRGIAYDLASA--ADFKALAPGVSWWYNWAAKPNAAAPVDALTQYGMDYFPMLWNDNFDAAAITAYIQAHGVKYLLLLNEPNLTDQASMTPQKAAQLWPRYEAIAAATGVKLVGPAMNWGTLAGYSDP--VTWLDAFYAAYQAANGNRAPHIDYLAFHWYDYGLASQLDRLKKY-----GKSIWVTEMANWHSQNDGAQIDTLARQQAQ-MKDMVATCEARDDVFRYAWFTG-RMTSD---PHFS-SLLGAN-GQLTALGQLY 314
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Match: D7FKU0_ECTSI (Putative serine rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU0_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 1.010e-15 Identity = 67/237 (28.27%), Postives = 106/237 (44.73%), Query Frame = 1 Query: 97 DPPRCYTSPKRGVAIGMAISHPEDLQALAPGVTWFNNW--AIFTNIPPHLRPS--ITFFPLTWGAKGVRALSADTMAEPG--GVLVGFNEPNWH---RVEPEFAAEMWGEVIAAAKKYNGKVSEMGVK------ARRDAVLGITWMRDFIAACERLYGTAAIDYINIHSYTCSTHALDFNIREHVRAFPGKKIIITEIACGQAMRNGHPRQQLSFMKQVIPYLENSEDVVYYSWYNG 762 +P C+ KRGV+ +DL ALAPG++W+ NW AI + + S + P+ WG K + + +A G ++GFNEPN+ + P+ AA +W V + A ++ V + D W+ DF +ACE TA I +H YTC L+ + +++ G I ITE AC + Q +++ + LE V Y+W+ G Sbjct: 125 EPTECHG--KRGVSFD--FKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEKDLDSTRLANLASLGQSSHMLGFNEPNFGSQANLTPQEAAALWSTVKSEAATLGAEIVSPAVNFCGGDCTKEDPY---EWLDDFFSACEGCDVTA----IAVHIYTCEVRYLNKILHGYLKY--GLPIWITEFACADDAAYMNEASQAAYLADALTLLELHPSVARYAWFTG 348 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169365 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10297 ID=mRNA_10297|Name=jgi.p|Trimin1|169365|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=876bp|location=Sequence derived from alignment at Contig_63:407338..408285+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTACGCGTCCCCCAAGCGCGGCGTCGCCATCGGCATGGCCATCTCCCback to top protein sequence of jgi.p|Trimin1|169365 >Trimin1|169365|e_gw1.63.117.1 ID=Trimin1|169365|e_gw1.63.117.1|Name=jgi.p|Trimin1|169365|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=292bp MLRVPQARRRHRHGHLPQSLLNVVLHTYLTPADPPRCYTSPKRGVAIGMAback to top mRNA from alignment at Contig_63:407338..408285+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10297 ID=mRNA_10297|Name=jgi.p|Trimin1|169365|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=948bp|location=Sequence derived from alignment at Contig_63:407338..408285+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_63:407338..408285+ >mRNA_10297 ID=mRNA_10297|Name=jgi.p|Trimin1|169365|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=876bp|location=Sequence derived from alignment at Contig_63:407338..408285+ (Tribonema minus UTEX_B_3156 )back to top |