mRNA_10163 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136229
Unique NamemRNA_10163
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|136229 vs. uniprot
Match: A0A835YQ76_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ76_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 8.680e-25
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 RARHFCLFFNRFGKCSAGAACPYAHDPAKVSVCLKFLRGACVDA 132
            RARHFCLFFNRFGKCSAGAACPYAHDPAKVSVCLKFLRGACVDA
Sbjct:    1 RARHFCLFFNRFGKCSAGAACPYAHDPAKVSVCLKFLRGACVDA 44
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BLAST of jgi.p|Trimin1|136229 vs. uniprot
Match: A0A2I0VYY2_9ASPA (Zinc finger CCCH domain-containing protein 7 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VYY2_9ASPA)

HSP 1 Score: 69.3 bits (168), Expect = 9.400e-13
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    7 RHFCLFFNRFGKCS-AGAACPYAHDPAKVSVCLKFLRGACVDA 132
            R FCLFF RFGKC+ +G  CPY HDPAKV++C KFLRG C DA
Sbjct:   78 RQFCLFFTRFGKCNKSGRKCPYIHDPAKVAICAKFLRGQCSDA 120
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BLAST of jgi.p|Trimin1|136229 vs. uniprot
Match: UPI0015CF9796 (zinc finger CCCH domain-containing protein 3 isoform X1 n=2 Tax=Electrophorus electricus TaxID=8005 RepID=UPI0015CF9796)

HSP 1 Score: 72.4 bits (176), Expect = 1.100e-12
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 RARHFCLFFNRFGKCSAGAACPYAHDPAKVSVCLKFLRGAC 123
            +ARH+C+++NRFGKC+ G ACPY HDP KV+VC +FLRG C
Sbjct:  712 QARHYCMYYNRFGKCNRGNACPYIHDPEKVAVCTRFLRGTC 752
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BLAST of jgi.p|Trimin1|136229 vs. uniprot
Match: A0A2D4NAI2_9SAUR (Uncharacterized protein (Fragment) n=1 Tax=Micrurus spixii TaxID=129469 RepID=A0A2D4NAI2_9SAUR)

HSP 1 Score: 68.6 bits (166), Expect = 1.140e-12
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 RARHFCLFFNRFGKCSAGAACPYAHDPAKVSVCLKFLRGAC 123
            R + +C+++NRFGKC+ G +CPY HDP KV+VC +FLRGAC
Sbjct:   52 RKKEYCMYYNRFGKCNRGESCPYIHDPEKVAVCTRFLRGAC 92
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BLAST of jgi.p|Trimin1|136229 vs. uniprot
Match: UPI000775E4FF (zinc finger CCCH domain-containing protein 3 n=1 Tax=Protobothrops mucrosquamatus TaxID=103944 RepID=UPI000775E4FF)

HSP 1 Score: 68.6 bits (166), Expect = 1.680e-12
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 RARHFCLFFNRFGKCSAGAACPYAHDPAKVSVCLKFLRGAC 123
            R + +C+++NRFGKC+ G +CPY HDP KV+VC +FLRGAC
Sbjct:   45 RKKEYCMYYNRFGKCNRGESCPYIHDPEKVAVCTRFLRGAC 85
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BLAST of jgi.p|Trimin1|136229 vs. uniprot
Match: UPI000EAA0311 (zinc finger CCCH domain-containing protein 3-like n=1 Tax=Pseudonaja textilis TaxID=8673 RepID=UPI000EAA0311)

HSP 1 Score: 68.6 bits (166), Expect = 4.200e-12
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 RARHFCLFFNRFGKCSAGAACPYAHDPAKVSVCLKFLRGAC 123
            R + +C+++NRFGKC+ G +CPY HDP KV+VC +FLRGAC
Sbjct:   58 RKKEYCMYYNRFGKCNRGESCPYIHDPEKVAVCTRFLRGAC 98
[Close]
BLAST of jgi.p|Trimin1|136229 vs. uniprot
Match: A0A2D0RYB3_ICTPU (zinc finger CCCH domain-containing protein 3 n=2 Tax=Ictaluridae TaxID=7996 RepID=A0A2D0RYB3_ICTPU)

HSP 1 Score: 70.1 bits (170), Expect = 7.110e-12
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 RARHFCLFFNRFGKCSAGAACPYAHDPAKVSVCLKFLRGAC 123
            +A+ +C++FNRFGKC+ G+ACPY HDP KV+VC +FLRG C
Sbjct:  692 QAKQYCMYFNRFGKCNRGSACPYIHDPDKVAVCTRFLRGTC 732
[Close]
BLAST of jgi.p|Trimin1|136229 vs. uniprot
Match: A0A8B7JNK8_9AVES (zinc finger CCCH domain-containing protein 3-like n=1 Tax=Apteryx mantelli mantelli TaxID=202946 RepID=A0A8B7JNK8_9AVES)

HSP 1 Score: 65.9 bits (159), Expect = 7.120e-12
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 RARHFCLFFNRFGKCSAGAACPYAHDPAKVSVCLKFLRGAC 123
            + + +C+++NRFGKC+ G +CPY HDP KV+VC +FLRG C
Sbjct:   47 KKKEYCMYYNRFGKCNRGESCPYIHDPEKVAVCTRFLRGTC 87
[Close]
BLAST of jgi.p|Trimin1|136229 vs. uniprot
Match: UPI0007ACDC56 (zinc finger CCCH domain-containing protein 3-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007ACDC56)

HSP 1 Score: 68.9 bits (167), Expect = 7.900e-12
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 RARHFCLFFNRFGKCSAGAACPYAHDPAKVSVCLKFLRGAC 123
            RA+ +C+++NRFGKC+ G ACPY HDP KV+VC +FLRG C
Sbjct:   73 RAKQYCMYYNRFGKCNHGDACPYIHDPDKVAVCTRFLRGTC 113
[Close]
BLAST of jgi.p|Trimin1|136229 vs. uniprot
Match: UPI000F4F3497 (zinc finger CCCH domain-containing protein 3 n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI000F4F3497)

HSP 1 Score: 69.7 bits (169), Expect = 9.680e-12
Identity = 25/41 (60.98%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 RARHFCLFFNRFGKCSAGAACPYAHDPAKVSVCLKFLRGAC 123
            +A+++C+++NRFGKC+ G+ACPY HDP KV+VC +FLRG C
Sbjct:  661 QAKNYCMYYNRFGKCNRGSACPYIHDPEKVAVCTRFLRGTC 701
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136229 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQ76_9STRA8.680e-25100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A2I0VYY2_9ASPA9.400e-1369.77Zinc finger CCCH domain-containing protein 7 n=1 T... [more]
UPI0015CF97961.100e-1265.85zinc finger CCCH domain-containing protein 3 isofo... [more]
A0A2D4NAI2_9SAUR1.140e-1260.98Uncharacterized protein (Fragment) n=1 Tax=Micruru... [more]
UPI000775E4FF1.680e-1260.98zinc finger CCCH domain-containing protein 3 n=1 T... [more]
UPI000EAA03114.200e-1260.98zinc finger CCCH domain-containing protein 3-like ... [more]
A0A2D0RYB3_ICTPU7.110e-1263.41zinc finger CCCH domain-containing protein 3 n=2 T... [more]
A0A8B7JNK8_9AVES7.120e-1256.10zinc finger CCCH domain-containing protein 3-like ... [more]
UPI0007ACDC567.900e-1263.41zinc finger CCCH domain-containing protein 3-like ... [more]
UPI000F4F34979.680e-1260.98zinc finger CCCH domain-containing protein 3 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_64contigContig_64:766823..767125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136229|gw1.64.66.1
BRITEko00000,ko00001,ko03036
KEGG Pathwayko04015,ko04144,ko04360,ko04390,ko04391,ko04530,ko05165,map04015,map04144,map04360,map04390,map04391,map04530,map05165
KEGG koko:K06093
GOsGO:0000981,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006355,GO:0006357,GO:0006378,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0010647,GO:0010793,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0016973,GO:0019219,GO:0019222,GO:0023051,GO:0023056,GO:0031123,GO:0031124,GO:0031323,GO:0031326,GO:0031503,GO:0031974,GO:0031981,GO:0032239,GO:0032386,GO:0032879,GO:0032880,GO:0032925,GO:0032927,GO:0032991,GO:0033036,GO:0033157,GO:0034613,GO:0034641,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046332,GO:0046483,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051049,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070412,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090087,GO:0090092,GO:0090100,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:0140110,GO:1901360,GO:1901363,GO:1903506,GO:1903827,GO:2000112,GO:2000197,GO:2001141
Preferred nameZC3H3
Descriptionzinc finger
COG categoryS
Max annot lvl33208|Metazoa
EggNOG OGsCOG5084@1|root,KOG1492@2759|Eukaryota,38HPF@33154|Opisthokonta,3BH42@33208|Metazoa,3CSQV@33213|Bilateria,481JA@7711|Chordata,4921E@7742|Vertebrata,4A02B@7898|Actinopterygii
Evalue4.08e-12
Seed ortholog8010.XP_010870767.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_004850.1
TranscriptId136551
TrackFilteredModels1
ProteinId136229
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136229gene_10163Tribonema minus UTEX_B_3156 geneContig_64 766823..767125 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10163_1exon_10163_1Tribonema minus UTEX_B_3156 exonContig_64 766823..767125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10163CDS_10163Tribonema minus UTEX_B_3156 CDSContig_64 766823..767125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136229Trimin1|136229|gw1.64.66.1Tribonema minus UTEX_B_3156 polypeptideContig_64 766823..767125 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10163 ID=mRNA_10163|Name=jgi.p|Trimin1|136229|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=303bp|location=Sequence derived from alignment at Contig_64:766823..767125+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCGCGCGGCATTTCTGCCTCTTCTTCAACCGGTTCGGCAAGTGCTCCGC
AGGCGCCGCGTGCCCGTACGCGCACGACCCCGCCAAGGTCAGCGTCTGCC
TCAAGTTCCTCAGGGGCGCGTGCGTCGACGCGGCGTGCCCGCTGTCGCAC
ACTCTCGACGCCGGCAAGATGCCCGTGTGCCGCCACTACCTCGAGGGCGT
GTGCGCCGTGGAGAATTGTCCGTACCGGCACGTCAACGTCGCGCGCGGCG
CGGCGCTGTGCCCCTCGTTCCAGAAGGGGTACTGCCCGCTCGGCGCGGAG
TGT
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protein sequence of jgi.p|Trimin1|136229

>Trimin1|136229|gw1.64.66.1 ID=Trimin1|136229|gw1.64.66.1|Name=jgi.p|Trimin1|136229|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=101bp
RARHFCLFFNRFGKCSAGAACPYAHDPAKVSVCLKFLRGACVDAACPLSH
TLDAGKMPVCRHYLEGVCAVENCPYRHVNVARGAALCPSFQKGYCPLGAE
C
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mRNA from alignment at Contig_64:766823..767125+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10163 ID=mRNA_10163|Name=jgi.p|Trimin1|136229|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=303bp|location=Sequence derived from alignment at Contig_64:766823..767125+ (Tribonema minus UTEX_B_3156 )
CGCGCGCGGCATTTCTGCCTCTTCTTCAACCGGTTCGGCAAGTGCTCCGC
AGGCGCCGCGTGCCCGTACGCGCACGACCCCGCCAAGGTCAGCGTCTGCC
TCAAGTTCCTCAGGGGCGCGTGCGTCGACGCGGCGTGCCCGCTGTCGCAC
ACTCTCGACGCCGGCAAGATGCCCGTGTGCCGCCACTACCTCGAGGGCGT
GTGCGCCGTGGAGAATTGTCCGTACCGGCACGTCAACGTCGCGCGCGGCG
CGGCGCTGTGCCCCTCGTTCCAGAAGGGGTACTGCCCGCTCGGCGCGGAG
TGT
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Coding sequence (CDS) from alignment at Contig_64:766823..767125+

>mRNA_10163 ID=mRNA_10163|Name=jgi.p|Trimin1|136229|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=303bp|location=Sequence derived from alignment at Contig_64:766823..767125+ (Tribonema minus UTEX_B_3156 )
CGCGCGCGGCATTTCTGCCTCTTCTTCAACCGGTTCGGCAAGTGCTCCGC
AGGCGCCGCGTGCCCGTACGCGCACGACCCCGCCAAGGTCAGCGTCTGCC
TCAAGTTCCTCAGGGGCGCGTGCGTCGACGCGGCGTGCCCGCTGTCGCAC
ACTCTCGACGCCGGCAAGATGCCCGTGTGCCGCCACTACCTCGAGGGCGT
GTGCGCCGTGGAGAATTGTCCGTACCGGCACGTCAACGTCGCGCGCGGCG
CGGCGCTGTGCCCCTCGTTCCAGAAGGGGTACTGCCCGCTCGGCGCGGAG
TGT
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