mRNA_S-firma_F_contig1000.60.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1000.60.1
Unique NamemRNA_S-firma_F_contig1000.60.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1000.60.1 vs. uniprot
Match: A0A6H5K0W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W7_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.400e-20
Identity = 69/116 (59.48%), Postives = 85/116 (73.28%), Query Frame = 1 
Query:   88 EASEELRRELERGQREAEQLRSRLQVSGDLAADEASRAKEAFQAERAVRSKLASSAEREEQLRSENAGLSAKVETLRATLAKLSTDLAETSKLSQDRLVDSEVSSRAAAAAERRSE 435
            E SE LR  L+R Q E E+LR+RL+ +  LAADEA +AKE+ +AE   RS+LA S EREE L+SENA L  + E LR TLA LS +L  +SKLSQDRL+  EVS+RAAA AERRS+
Sbjct:  230 EVSEGLRAALQRSQGETERLRARLETAVGLAADEAGKAKESSRAEELSRSQLAVSGEREENLQSENASLRNENEGLRRTLASLSAELEASSKLSQDRLIKCEVSARAAAEAERRSD 345
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BLAST of mRNA_S-firma_F_contig1000.60.1 vs. uniprot
Match: D7FH76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH76_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.350e-9
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:    1 RGLLEDRDARLEKAERDAAASSQGSERCKEASEELRRELERGQREAEQLRSRLQVSGDLAADEASRAKEAFQAE 222
            RG L DR+A L++AER+ AA+ + SER +E SE LR  L+R Q EAE+LR+RL+ + +LAADEA +AKE+ +AE
Sbjct:  548 RGFLADREASLDRAERELAAARETSERGEEVSEGLRSALQRSQGEAERLRARLETAVELAADEAGKAKESSRAE 621
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1000.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0W7_9PHAE5.400e-2059.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH76_ECTSI2.350e-955.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1000contigS-firma_F_contig1000:24192..26243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size436
Cds size435
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1000.60.1prot_S-firma_F_contig1000.60.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1000 24192..26243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815523.260201-CDS-S-firma_F_contig1000:24191..242331622815523.260201-CDS-S-firma_F_contig1000:24191..24233Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 24192..24233 -
1696949385.8714516-CDS-S-firma_F_contig1000:24191..242331696949385.8714516-CDS-S-firma_F_contig1000:24191..24233Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 24192..24233 -
1622815523.2727299-CDS-S-firma_F_contig1000:24494..246541622815523.2727299-CDS-S-firma_F_contig1000:24494..24654Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 24495..24654 -
1696949385.924228-CDS-S-firma_F_contig1000:24494..246541696949385.924228-CDS-S-firma_F_contig1000:24494..24654Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 24495..24654 -
1622815523.2867398-CDS-S-firma_F_contig1000:25243..253961622815523.2867398-CDS-S-firma_F_contig1000:25243..25396Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 25244..25396 -
1696949385.9534326-CDS-S-firma_F_contig1000:25243..253961696949385.9534326-CDS-S-firma_F_contig1000:25243..25396Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 25244..25396 -
1622815523.2988613-CDS-S-firma_F_contig1000:26163..262431622815523.2988613-CDS-S-firma_F_contig1000:26163..26243Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 26164..26243 -
1696949385.9757204-CDS-S-firma_F_contig1000:26163..262431696949385.9757204-CDS-S-firma_F_contig1000:26163..26243Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 26164..26243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1000.60.1

>prot_S-firma_F_contig1000.60.1 ID=prot_S-firma_F_contig1000.60.1|Name=mRNA_S-firma_F_contig1000.60.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=145bp
RGLLEDRDARLEKAERDAAASSQGSERCKEASEELRRELERGQREAEQLR
SRLQVSGDLAADEASRAKEAFQAERAVRSKLASSAEREEQLRSENAGLSA
KVETLRATLAKLSTDLAETSKLSQDRLVDSEVSSRAAAAAERRSE
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mRNA from alignment at S-firma_F_contig1000:24192..26243-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1000.60.1 ID=mRNA_S-firma_F_contig1000.60.1|Name=mRNA_S-firma_F_contig1000.60.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2052bp|location=Sequence derived from alignment at S-firma_F_contig1000:24192..26243- (Sphaerotrichia firma ET2_F female)
AGGGGGCTCCTCGAGGACCGAGACGCCAGGTTGGAAAAGGCGGAGAGGGA
TGCGGCGGCATCATCGCAAGGCTCGGAGCGGTGAGCCGATTCCGGTCAAA
ATTGCGTTGCCGTTTTTTTCGCATCTTGGTGTGTGACGGTACGTAGGAAC
GAGGCAAAGAGCGAAAGGGCTGTTTCGCAACTGAAAACATGTGCGTATTG
TGCAGCGCGATATTCCATGTGCGAAGAGGTAAGCGCTAGATACTCTGAAG
GCGTCATGATGAGGAGGAGGACATGGGCTTGTGGACGTGCAGGAAGCTTG
AAAATTGATTGAGTGTGAAGGATTTATGCCTTCTGCGGTTCGTGCTCCCG
TTCCCGGACAAGATTATTTATGCAAGCACGCGGGCTTTGCCATTGTAGCG
TGGTCGCTCTCGCTTGCCCCTTCCTGCTGTAGCAGACAGTAGCAGATAGG
AGTCGCGCGAAGGGTGAGACGTGTCCATGTGCAACATAGAATAGCATCAT
CGAAGGCGACGCGACACACACTTAAGCATTTCGGCGGGAAGGGCGAAACG
AACTCGAAACATGACGTGACATGATATGACATGATATGATTTGACATGAT
ATGATCATGAACATGAACATGAACATGATCTGATGTTCCATGATTGACAC
GACATGACATGACATGACATGACCAGCTGGGGACGTTCTATCCCCCCCCC
TACTCCAGTGCTCCGCATCACCCGAGCCACTGCACGCCCAACCCACCCCA
GCCTGATGCATGTGATGAATCTTCATCACAAGTCTAAATCTCAAGGGAAC
AACACTACACGTACGGGGAGAACAACACGATTTTACGATTTTCGCAGGTG
CAAGGAAGCTTCCGAAGAGCTTCGCCGTGAGCTGGAGCGCGGCCAGAGGG
AGGCGGAGCAGCTGAGGTCGCGGCTGCAGGTCTCCGGAGATCTCGCAGCC
GACGAAGCAAGCAGGGCGAAGGAAGCCTTCCAGGCGGAGAGAGCCGTAAG
GTGCGGTGAAGGATCCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTG
TACCGTGCGGAGAGAGAGAGGGAGATAGGGAGAGGGATGTAGAGAGAGGG
ATGTAGGGTCGAGGGGGGGCTACACATTGTACGTTTTGTGGGGGAGGTCA
AGAGTCCCGGCCTTGGGGTTTTGGTTGTTTGTTAAATCGCACACAAAGGG
TTGTGTGGTTGCTATCAATATATATTTTTTCTTTGCGCGCGCACACGGAA
GATACCATACGTCCACAGACAAACCAACACAGGAAGAAACCTCAAACTGC
GCGGCTTGCTGATTTTGTGCCGTTGTCTGGGGGTTGAGCGTATCTTCAAC
AGTCCCCCTGGAACGACGTACTATTCACAGGCTGGGCGTAGAAGATTTTT
TAAAATCCCTTCACCAAAACCTGTCTCAACAAACAAGAAAACGAAGAGAG
TTTGAAATCAAGCGCAGATCACCACCGGCCGCAGCATCATTTTTGACCCC
ACACAAAAAACAACAACCACAACAATCACCAGCACCAACACCACCAGCAG
CATTAACAACATCAGCTCTAACACCAACATGACCAACAGGTCTAAGCTAG
CGTCCTCGGCTGAGCGAGAGGAGCAACTCCGGTCCGAGAATGCCGGCCTC
TCTGCCAAGGTCGAGACCCTTCGTGCCACGCTCGCGAAGCTGTCGACCGA
TCTCGCGGAGACGAGCAAACTCAGCCAGGACAGGCTCGTCGACTCCGAGG
TGAAACCAATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGTTGTTGTTGTTATTG
TTCTTGTTGTTGTTACTGCTGCTGCTGTTGCTGTTGTTGTTGTTGTCGTC
GTTGTTGTGGTCACACGCAGGCGTCTTCCGGAGCAACCGCCGCGTCAGAG
CTCCCAGCACAAACAAAACCCTCCCTCCATTCTCGCTGCCGTCATGCACG
TCACAAGCAGGTATCCTCCAGAGCAGCCGCCGCGGCCGAGCGCCGATCGG
AG
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Coding sequence (CDS) from alignment at S-firma_F_contig1000:24192..26243-

>mRNA_S-firma_F_contig1000.60.1 ID=mRNA_S-firma_F_contig1000.60.1|Name=mRNA_S-firma_F_contig1000.60.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=870bp|location=Sequence derived from alignment at S-firma_F_contig1000:24192..26243- (Sphaerotrichia firma ET2_F female)
AGGGGGCTCCTCGAGGACCGAGACGCCAGGTTGGAAAAGGCGGAGAGGGA
TGCGGCGGCATCATCGCAAGGCTCGGAGCGAGGGGGCTCCTCGAGGACCG
AGACGCCAGGTTGGAAAAGGCGGAGAGGGATGCGGCGGCATCATCGCAAG
GCTCGGAGCGGTGCAAGGAAGCTTCCGAAGAGCTTCGCCGTGAGCTGGAG
CGCGGCCAGAGGGAGGCGGAGCAGCTGAGGTCGCGGCTGCAGGTCTCCGG
AGATCTCGCAGCCGACGAAGCAAGCAGGGCGAAGGAAGCCTTCCAGGCGG
AGAGAGCCGTAAGGTGCAAGGAAGCTTCCGAAGAGCTTCGCCGTGAGCTG
GAGCGCGGCCAGAGGGAGGCGGAGCAGCTGAGGTCGCGGCTGCAGGTCTC
CGGAGATCTCGCAGCCGACGAAGCAAGCAGGGCGAAGGAAGCCTTCCAGG
CGGAGAGAGCCGTAAGGTCTAAGCTAGCGTCCTCGGCTGAGCGAGAGGAG
CAACTCCGGTCCGAGAATGCCGGCCTCTCTGCCAAGGTCGAGACCCTTCG
TGCCACGCTCGCGAAGCTGTCGACCGATCTCGCGGAGACGAGCAAACTCA
GCCAGGACAGGCTCGTCGACTCCGAGGTCTAAGCTAGCGTCCTCGGCTGA
GCGAGAGGAGCAACTCCGGTCCGAGAATGCCGGCCTCTCTGCCAAGGTCG
AGACCCTTCGTGCCACGCTCGCGAAGCTGTCGACCGATCTCGCGGAGACG
AGCAAACTCAGCCAGGACAGGCTCGTCGACTCCGAGGTATCCTCCAGAGC
AGCCGCCGCGGCCGAGCGCCGATCGGAGGTATCCTCCAGAGCAGCCGCCG
CGGCCGAGCGCCGATCGGAG
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