mRNA_S-firma_F_contig1000.60.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_S-firma_F_contig1000.60.1 vs. uniprot
Match: A0A6H5K0W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W7_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.400e-20
Identity = 69/116 (59.48%), Postives = 85/116 (73.28%), Query Frame = 1

Query:   88 EASEELRRELERGQREAEQLRSRLQVSGDLAADEASRAKEAFQAERAVRSKLASSAEREEQLRSENAGLSAKVETLRATLAKLSTDLAETSKLSQDRLVDSEVSSRAAAAAERRSE 435
            E SE LR  L+R Q E E+LR+RL+ +  LAADEA +AKE+ +AE   RS+LA S EREE L+SENA L  + E LR TLA LS +L  +SKLSQDRL+  EVS+RAAA AERRS+
Sbjct:  230 EVSEGLRAALQRSQGETERLRARLETAVGLAADEAGKAKESSRAEELSRSQLAVSGEREENLQSENASLRNENEGLRRTLASLSAELEASSKLSQDRLIKCEVSARAAAEAERRSD 345

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BLAST of mRNA_S-firma_F_contig1000.60.1 vs. uniprot
Match: D7FH76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH76_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.350e-9
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 1

Query:    1 RGLLEDRDARLEKAERDAAASSQGSERCKEASEELRRELERGQREAEQLRSRLQVSGDLAADEASRAKEAFQAE 222
            RG L DR+A L++AER+ AA+ + SER +E SE LR  L+R Q EAE+LR+RL+ + +LAADEA +AKE+ +AE
Sbjct:  548 RGFLADREASLDRAERELAAARETSERGEEVSEGLRSALQRSQGEAERLRARLETAVELAADEAGKAKESSRAE 621

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_F_contig1000.60.1 vs. uniprot

BLAST of mRNA_S-firma_F_contig1000.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5K0W7_9PHAE	5.400e-20	59.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FH76_ECTSI	2.350e-9	55.41	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	436
Cds size	435
Stop	0
Start	0

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-firma_F_contig1000:24192..26243-
coding sequence from alignment at S-firma_F_contig1000:24192..26243-

protein sequence of mRNA_S-firma_F_contig1000.60.1

>prot_S-firma_F_contig1000.60.1 ID=prot_S-firma_F_contig1000.60.1|Name=mRNA_S-firma_F_contig1000.60.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=145bp
RGLLEDRDARLEKAERDAAASSQGSERCKEASEELRRELERGQREAEQLR
SRLQVSGDLAADEASRAKEAFQAERAVRSKLASSAEREEQLRSENAGLSA
KVETLRATLAKLSTDLAETSKLSQDRLVDSEVSSRAAAAAERRSE

mRNA from alignment at S-firma_F_contig1000:24192..26243-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-firma_F_contig1000.60.1 ID=mRNA_S-firma_F_contig1000.60.1|Name=mRNA_S-firma_F_contig1000.60.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2052bp|location=Sequence derived from alignment at S-firma_F_contig1000:24192..26243- (Sphaerotrichia firma ET2_F female)
AGGGGGCTCCTCGAGGACCGAGACGCCAGGTTGGAAAAGGCGGAGAGGGA
TGCGGCGGCATCATCGCAAGGCTCGGAGCGGTGAGCCGATTCCGGTCAAA
ATTGCGTTGCCGTTTTTTTCGCATCTTGGTGTGTGACGGTACGTAGGAAC
GAGGCAAAGAGCGAAAGGGCTGTTTCGCAACTGAAAACATGTGCGTATTG
TGCAGCGCGATATTCCATGTGCGAAGAGGTAAGCGCTAGATACTCTGAAG
GCGTCATGATGAGGAGGAGGACATGGGCTTGTGGACGTGCAGGAAGCTTG
AAAATTGATTGAGTGTGAAGGATTTATGCCTTCTGCGGTTCGTGCTCCCG
TTCCCGGACAAGATTATTTATGCAAGCACGCGGGCTTTGCCATTGTAGCG
TGGTCGCTCTCGCTTGCCCCTTCCTGCTGTAGCAGACAGTAGCAGATAGG
AGTCGCGCGAAGGGTGAGACGTGTCCATGTGCAACATAGAATAGCATCAT
CGAAGGCGACGCGACACACACTTAAGCATTTCGGCGGGAAGGGCGAAACG
AACTCGAAACATGACGTGACATGATATGACATGATATGATTTGACATGAT
ATGATCATGAACATGAACATGAACATGATCTGATGTTCCATGATTGACAC
GACATGACATGACATGACATGACCAGCTGGGGACGTTCTATCCCCCCCCC
TACTCCAGTGCTCCGCATCACCCGAGCCACTGCACGCCCAACCCACCCCA
GCCTGATGCATGTGATGAATCTTCATCACAAGTCTAAATCTCAAGGGAAC
AACACTACACGTACGGGGAGAACAACACGATTTTACGATTTTCGCAGGTG
CAAGGAAGCTTCCGAAGAGCTTCGCCGTGAGCTGGAGCGCGGCCAGAGGG
AGGCGGAGCAGCTGAGGTCGCGGCTGCAGGTCTCCGGAGATCTCGCAGCC
GACGAAGCAAGCAGGGCGAAGGAAGCCTTCCAGGCGGAGAGAGCCGTAAG
GTGCGGTGAAGGATCCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTG
TACCGTGCGGAGAGAGAGAGGGAGATAGGGAGAGGGATGTAGAGAGAGGG
ATGTAGGGTCGAGGGGGGGCTACACATTGTACGTTTTGTGGGGGAGGTCA
AGAGTCCCGGCCTTGGGGTTTTGGTTGTTTGTTAAATCGCACACAAAGGG
TTGTGTGGTTGCTATCAATATATATTTTTTCTTTGCGCGCGCACACGGAA
GATACCATACGTCCACAGACAAACCAACACAGGAAGAAACCTCAAACTGC
GCGGCTTGCTGATTTTGTGCCGTTGTCTGGGGGTTGAGCGTATCTTCAAC
AGTCCCCCTGGAACGACGTACTATTCACAGGCTGGGCGTAGAAGATTTTT
TAAAATCCCTTCACCAAAACCTGTCTCAACAAACAAGAAAACGAAGAGAG
TTTGAAATCAAGCGCAGATCACCACCGGCCGCAGCATCATTTTTGACCCC
ACACAAAAAACAACAACCACAACAATCACCAGCACCAACACCACCAGCAG
CATTAACAACATCAGCTCTAACACCAACATGACCAACAGGTCTAAGCTAG
CGTCCTCGGCTGAGCGAGAGGAGCAACTCCGGTCCGAGAATGCCGGCCTC
TCTGCCAAGGTCGAGACCCTTCGTGCCACGCTCGCGAAGCTGTCGACCGA
TCTCGCGGAGACGAGCAAACTCAGCCAGGACAGGCTCGTCGACTCCGAGG
TGAAACCAATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGTTGTTGTTGTTATTG
TTCTTGTTGTTGTTACTGCTGCTGCTGTTGCTGTTGTTGTTGTTGTCGTC
GTTGTTGTGGTCACACGCAGGCGTCTTCCGGAGCAACCGCCGCGTCAGAG
CTCCCAGCACAAACAAAACCCTCCCTCCATTCTCGCTGCCGTCATGCACG
TCACAAGCAGGTATCCTCCAGAGCAGCCGCCGCGGCCGAGCGCCGATCGG
AG

Coding sequence (CDS) from alignment at S-firma_F_contig1000:24192..26243-

>mRNA_S-firma_F_contig1000.60.1 ID=mRNA_S-firma_F_contig1000.60.1|Name=mRNA_S-firma_F_contig1000.60.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=870bp|location=Sequence derived from alignment at S-firma_F_contig1000:24192..26243- (Sphaerotrichia firma ET2_F female)
AGGGGGCTCCTCGAGGACCGAGACGCCAGGTTGGAAAAGGCGGAGAGGGA
TGCGGCGGCATCATCGCAAGGCTCGGAGCGAGGGGGCTCCTCGAGGACCG
AGACGCCAGGTTGGAAAAGGCGGAGAGGGATGCGGCGGCATCATCGCAAG
GCTCGGAGCGGTGCAAGGAAGCTTCCGAAGAGCTTCGCCGTGAGCTGGAG
CGCGGCCAGAGGGAGGCGGAGCAGCTGAGGTCGCGGCTGCAGGTCTCCGG
AGATCTCGCAGCCGACGAAGCAAGCAGGGCGAAGGAAGCCTTCCAGGCGG
AGAGAGCCGTAAGGTGCAAGGAAGCTTCCGAAGAGCTTCGCCGTGAGCTG
GAGCGCGGCCAGAGGGAGGCGGAGCAGCTGAGGTCGCGGCTGCAGGTCTC
CGGAGATCTCGCAGCCGACGAAGCAAGCAGGGCGAAGGAAGCCTTCCAGG
CGGAGAGAGCCGTAAGGTCTAAGCTAGCGTCCTCGGCTGAGCGAGAGGAG
CAACTCCGGTCCGAGAATGCCGGCCTCTCTGCCAAGGTCGAGACCCTTCG
TGCCACGCTCGCGAAGCTGTCGACCGATCTCGCGGAGACGAGCAAACTCA
GCCAGGACAGGCTCGTCGACTCCGAGGTCTAAGCTAGCGTCCTCGGCTGA
GCGAGAGGAGCAACTCCGGTCCGAGAATGCCGGCCTCTCTGCCAAGGTCG
AGACCCTTCGTGCCACGCTCGCGAAGCTGTCGACCGATCTCGCGGAGACG
AGCAAACTCAGCCAGGACAGGCTCGTCGACTCCGAGGTATCCTCCAGAGC
AGCCGCCGCGGCCGAGCGCCGATCGGAGGTATCCTCCAGAGCAGCCGCCG
CGGCCGAGCGCCGATCGGAG