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Homology
BLAST of mRNA_S-firma_F_contig1000.60.1 vs. uniprot
Match: A0A6H5K0W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W7_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 5.400e-20 Identity = 69/116 (59.48%), Postives = 85/116 (73.28%), Query Frame = 1 Query: 88 EASEELRRELERGQREAEQLRSRLQVSGDLAADEASRAKEAFQAERAVRSKLASSAEREEQLRSENAGLSAKVETLRATLAKLSTDLAETSKLSQDRLVDSEVSSRAAAAAERRSE 435
E SE LR L+R Q E E+LR+RL+ + LAADEA +AKE+ +AE RS+LA S EREE L+SENA L + E LR TLA LS +L +SKLSQDRL+ EVS+RAAA AERRS+
Sbjct: 230 EVSEGLRAALQRSQGETERLRARLETAVGLAADEAGKAKESSRAEELSRSQLAVSGEREENLQSENASLRNENEGLRRTLASLSAELEASSKLSQDRLIKCEVSARAAAEAERRSD 345
BLAST of mRNA_S-firma_F_contig1000.60.1 vs. uniprot
Match: D7FH76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH76_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 2.350e-9 Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 1 Query: 1 RGLLEDRDARLEKAERDAAASSQGSERCKEASEELRRELERGQREAEQLRSRLQVSGDLAADEASRAKEAFQAE 222
RG L DR+A L++AER+ AA+ + SER +E SE LR L+R Q EAE+LR+RL+ + +LAADEA +AKE+ +AE
Sbjct: 548 RGFLADREASLDRAERELAAARETSERGEEVSEGLRSALQRSQGEAERLRARLETAVELAADEAGKAKESSRAE 621
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 436 |
| Cds size | 435 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815523.260201-CDS-S-firma_F_contig1000:24191..24233 | 1622815523.260201-CDS-S-firma_F_contig1000:24191..24233 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 24192..24233 - |
| 1696949385.8714516-CDS-S-firma_F_contig1000:24191..24233 | 1696949385.8714516-CDS-S-firma_F_contig1000:24191..24233 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 24192..24233 - |
| 1622815523.2727299-CDS-S-firma_F_contig1000:24494..24654 | 1622815523.2727299-CDS-S-firma_F_contig1000:24494..24654 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 24495..24654 - |
| 1696949385.924228-CDS-S-firma_F_contig1000:24494..24654 | 1696949385.924228-CDS-S-firma_F_contig1000:24494..24654 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 24495..24654 - |
| 1622815523.2867398-CDS-S-firma_F_contig1000:25243..25396 | 1622815523.2867398-CDS-S-firma_F_contig1000:25243..25396 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 25244..25396 - |
| 1696949385.9534326-CDS-S-firma_F_contig1000:25243..25396 | 1696949385.9534326-CDS-S-firma_F_contig1000:25243..25396 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 25244..25396 - |
| 1622815523.2988613-CDS-S-firma_F_contig1000:26163..26243 | 1622815523.2988613-CDS-S-firma_F_contig1000:26163..26243 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 26164..26243 - |
| 1696949385.9757204-CDS-S-firma_F_contig1000:26163..26243 | 1696949385.9757204-CDS-S-firma_F_contig1000:26163..26243 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 26164..26243 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1000.60.1 >prot_S-firma_F_contig1000.60.1 ID=prot_S-firma_F_contig1000.60.1|Name=mRNA_S-firma_F_contig1000.60.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=145bp
RGLLEDRDARLEKAERDAAASSQGSERCKEASEELRRELERGQREAEQLR
SRLQVSGDLAADEASRAKEAFQAERAVRSKLASSAEREEQLRSENAGLSA
KVETLRATLAKLSTDLAETSKLSQDRLVDSEVSSRAAAAAERRSE back to topmRNA from alignment at S-firma_F_contig1000:24192..26243- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig1000.60.1 ID=mRNA_S-firma_F_contig1000.60.1|Name=mRNA_S-firma_F_contig1000.60.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2052bp|location=Sequence derived from alignment at S-firma_F_contig1000:24192..26243- (Sphaerotrichia firma ET2_F female)
AGGGGGCTCCTCGAGGACCGAGACGCCAGGTTGGAAAAGGCGGAGAGGGA
TGCGGCGGCATCATCGCAAGGCTCGGAGCGGTGAGCCGATTCCGGTCAAA
ATTGCGTTGCCGTTTTTTTCGCATCTTGGTGTGTGACGGTACGTAGGAAC
GAGGCAAAGAGCGAAAGGGCTGTTTCGCAACTGAAAACATGTGCGTATTG
TGCAGCGCGATATTCCATGTGCGAAGAGGTAAGCGCTAGATACTCTGAAG
GCGTCATGATGAGGAGGAGGACATGGGCTTGTGGACGTGCAGGAAGCTTG
AAAATTGATTGAGTGTGAAGGATTTATGCCTTCTGCGGTTCGTGCTCCCG
TTCCCGGACAAGATTATTTATGCAAGCACGCGGGCTTTGCCATTGTAGCG
TGGTCGCTCTCGCTTGCCCCTTCCTGCTGTAGCAGACAGTAGCAGATAGG
AGTCGCGCGAAGGGTGAGACGTGTCCATGTGCAACATAGAATAGCATCAT
CGAAGGCGACGCGACACACACTTAAGCATTTCGGCGGGAAGGGCGAAACG
AACTCGAAACATGACGTGACATGATATGACATGATATGATTTGACATGAT
ATGATCATGAACATGAACATGAACATGATCTGATGTTCCATGATTGACAC
GACATGACATGACATGACATGACCAGCTGGGGACGTTCTATCCCCCCCCC
TACTCCAGTGCTCCGCATCACCCGAGCCACTGCACGCCCAACCCACCCCA
GCCTGATGCATGTGATGAATCTTCATCACAAGTCTAAATCTCAAGGGAAC
AACACTACACGTACGGGGAGAACAACACGATTTTACGATTTTCGCAGGTG
CAAGGAAGCTTCCGAAGAGCTTCGCCGTGAGCTGGAGCGCGGCCAGAGGG
AGGCGGAGCAGCTGAGGTCGCGGCTGCAGGTCTCCGGAGATCTCGCAGCC
GACGAAGCAAGCAGGGCGAAGGAAGCCTTCCAGGCGGAGAGAGCCGTAAG
GTGCGGTGAAGGATCCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTG
TACCGTGCGGAGAGAGAGAGGGAGATAGGGAGAGGGATGTAGAGAGAGGG
ATGTAGGGTCGAGGGGGGGCTACACATTGTACGTTTTGTGGGGGAGGTCA
AGAGTCCCGGCCTTGGGGTTTTGGTTGTTTGTTAAATCGCACACAAAGGG
TTGTGTGGTTGCTATCAATATATATTTTTTCTTTGCGCGCGCACACGGAA
GATACCATACGTCCACAGACAAACCAACACAGGAAGAAACCTCAAACTGC
GCGGCTTGCTGATTTTGTGCCGTTGTCTGGGGGTTGAGCGTATCTTCAAC
AGTCCCCCTGGAACGACGTACTATTCACAGGCTGGGCGTAGAAGATTTTT
TAAAATCCCTTCACCAAAACCTGTCTCAACAAACAAGAAAACGAAGAGAG
TTTGAAATCAAGCGCAGATCACCACCGGCCGCAGCATCATTTTTGACCCC
ACACAAAAAACAACAACCACAACAATCACCAGCACCAACACCACCAGCAG
CATTAACAACATCAGCTCTAACACCAACATGACCAACAGGTCTAAGCTAG
CGTCCTCGGCTGAGCGAGAGGAGCAACTCCGGTCCGAGAATGCCGGCCTC
TCTGCCAAGGTCGAGACCCTTCGTGCCACGCTCGCGAAGCTGTCGACCGA
TCTCGCGGAGACGAGCAAACTCAGCCAGGACAGGCTCGTCGACTCCGAGG
TGAAACCAATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGTTGTTGTTGTTATTG
TTCTTGTTGTTGTTACTGCTGCTGCTGTTGCTGTTGTTGTTGTTGTCGTC
GTTGTTGTGGTCACACGCAGGCGTCTTCCGGAGCAACCGCCGCGTCAGAG
CTCCCAGCACAAACAAAACCCTCCCTCCATTCTCGCTGCCGTCATGCACG
TCACAAGCAGGTATCCTCCAGAGCAGCCGCCGCGGCCGAGCGCCGATCGG
AG back to topCoding sequence (CDS) from alignment at S-firma_F_contig1000:24192..26243- >mRNA_S-firma_F_contig1000.60.1 ID=mRNA_S-firma_F_contig1000.60.1|Name=mRNA_S-firma_F_contig1000.60.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=870bp|location=Sequence derived from alignment at S-firma_F_contig1000:24192..26243- (Sphaerotrichia firma ET2_F female)
AGGGGGCTCCTCGAGGACCGAGACGCCAGGTTGGAAAAGGCGGAGAGGGA
TGCGGCGGCATCATCGCAAGGCTCGGAGCGAGGGGGCTCCTCGAGGACCG
AGACGCCAGGTTGGAAAAGGCGGAGAGGGATGCGGCGGCATCATCGCAAG
GCTCGGAGCGGTGCAAGGAAGCTTCCGAAGAGCTTCGCCGTGAGCTGGAG
CGCGGCCAGAGGGAGGCGGAGCAGCTGAGGTCGCGGCTGCAGGTCTCCGG
AGATCTCGCAGCCGACGAAGCAAGCAGGGCGAAGGAAGCCTTCCAGGCGG
AGAGAGCCGTAAGGTGCAAGGAAGCTTCCGAAGAGCTTCGCCGTGAGCTG
GAGCGCGGCCAGAGGGAGGCGGAGCAGCTGAGGTCGCGGCTGCAGGTCTC
CGGAGATCTCGCAGCCGACGAAGCAAGCAGGGCGAAGGAAGCCTTCCAGG
CGGAGAGAGCCGTAAGGTCTAAGCTAGCGTCCTCGGCTGAGCGAGAGGAG
CAACTCCGGTCCGAGAATGCCGGCCTCTCTGCCAAGGTCGAGACCCTTCG
TGCCACGCTCGCGAAGCTGTCGACCGATCTCGCGGAGACGAGCAAACTCA
GCCAGGACAGGCTCGTCGACTCCGAGGTCTAAGCTAGCGTCCTCGGCTGA
GCGAGAGGAGCAACTCCGGTCCGAGAATGCCGGCCTCTCTGCCAAGGTCG
AGACCCTTCGTGCCACGCTCGCGAAGCTGTCGACCGATCTCGCGGAGACG
AGCAAACTCAGCCAGGACAGGCTCGTCGACTCCGAGGTATCCTCCAGAGC
AGCCGCCGCGGCCGAGCGCCGATCGGAGGTATCCTCCAGAGCAGCCGCCG
CGGCCGAGCGCCGATCGGAG back to top
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