Homology
BLAST of mRNA_S-firma_F_contig1000.58.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 8.420e-10 Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 Query: 145 AEEGRRMPWAGVEDLKRSRRAHRERLEELLSACVGAMPFEPRGGGW 282
A++G + WAG L+RSR A+RERLE LLSACV AMP EPRGGGW
Sbjct: 1000 ADKGTGVEWAGSSALERSRVANRERLESLLSACVEAMPLEPRGGGW 1045
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | no signal peptide or anchor |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-13_004250.1 |
| Exons | 1 |
| Model size | 450 |
| Cds size | 123 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815523.3412845-UTR-S-firma_F_contig1000:3043..3205 | 1622815523.3412845-UTR-S-firma_F_contig1000:3043..3205 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1000 3044..3205 + |
| 1696949386.0205643-UTR-S-firma_F_contig1000:3043..3205 | 1696949386.0205643-UTR-S-firma_F_contig1000:3043..3205 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1000 3044..3205 + |
| 1622815523.3649838-UTR-S-firma_F_contig1000:3328..3493 | 1622815523.3649838-UTR-S-firma_F_contig1000:3328..3493 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1000 3329..3493 + |
| 1696949386.1666067-UTR-S-firma_F_contig1000:3328..3493 | 1696949386.1666067-UTR-S-firma_F_contig1000:3328..3493 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig1000 3329..3493 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815523.35371-CDS-S-firma_F_contig1000:3205..3328 | 1622815523.35371-CDS-S-firma_F_contig1000:3205..3328 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 3206..3328 + |
| 1696949386.142675-CDS-S-firma_F_contig1000:3205..3328 | 1696949386.142675-CDS-S-firma_F_contig1000:3205..3328 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 3206..3328 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1000.58.1 >prot_S-firma_F_contig1000.58.1 ID=prot_S-firma_F_contig1000.58.1|Name=mRNA_S-firma_F_contig1000.58.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=41bp
MPWAGVEDLKRSRRAHRERLEELLSACVGAMPFEPRGGGW* back to topmRNA from alignment at S-firma_F_contig1000:3044..3493+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig1000.58.1 ID=mRNA_S-firma_F_contig1000.58.1|Name=mRNA_S-firma_F_contig1000.58.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=450bp|location=Sequence derived from alignment at S-firma_F_contig1000:3044..3493+ (Sphaerotrichia firma ET2_F female)
CAAGAAGAAGAAGCGGCGAGAGGCCGGAGCGGCGGCGGCGGCGGCGGCGG
CGAGGGGGGCACCGTGTTTGCTTGTTTCGAGACGAAACCACCGCGGAACC
GCCACCAACACCAACACCCTGCGGTAGCCTCAGGCGAAAGCGCTGCTGAG
GAGGGCCGCAGGATGCCTTGGGCAGGGGTCGAGGACCTGAAGCGATCTAG
GAGGGCGCACAGGGAGAGGCTGGAAGAGCTCCTGTCTGCCTGCGTCGGAG
CTATGCCGTTTGAGCCGCGAGGGGGGGGCTGGTAGCTTGGTGTGATTGGA
CTGACATGGGTCAGTGAGGGCCTGACGTTGGTTGGTTGCTTCCTCGTTGT
ACGAAAACAATGTTTGATACCGCATACCTCACCTTGCCGAGTGATAACCG
TGTGATTTGTCTGTCTTCTCCGCCGCCTCCCTCTCACTCTCTTGGTGCCC
back to topCoding sequence (CDS) from alignment at S-firma_F_contig1000:3044..3493+ >mRNA_S-firma_F_contig1000.58.1 ID=mRNA_S-firma_F_contig1000.58.1|Name=mRNA_S-firma_F_contig1000.58.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=246bp|location=Sequence derived from alignment at S-firma_F_contig1000:3044..3493+ (Sphaerotrichia firma ET2_F female)
ATGCCTTGGGCAGGGGTCGAGGACCTGAAGCGATCTAGGAGGGCGCACAG
GGAGAGGCTGGAAGAGCTCCTGTCTGCCTGCGTCGGAGCTATGCCGTTTG
AGCCGCGAGGGGGGGGCTGGTAGATGCCTTGGGCAGGGGTCGAGGACCTG
AAGCGATCTAGGAGGGCGCACAGGGAGAGGCTGGAAGAGCTCCTGTCTGC
CTGCGTCGGAGCTATGCCGTTTGAGCCGCGAGGGGGGGGCTGGTAG back to top
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