mRNA_S-firma_F_contig1000.58.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1000.58.1
Unique NamemRNA_S-firma_F_contig1000.58.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1000.58.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 8.420e-10
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:  145 AEEGRRMPWAGVEDLKRSRRAHRERLEELLSACVGAMPFEPRGGGW 282
            A++G  + WAG   L+RSR A+RERLE LLSACV AMP EPRGGGW
Sbjct: 1000 ADKGTGVEWAGSSALERSRVANRERLESLLSACVEAMPLEPRGGGW 1045
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1000.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBF2_9PHAE8.420e-1067.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1000contigS-firma_F_contig1000:3044..3493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004250.1
Exons1
Model size450
Cds size123
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1000.58.1prot_S-firma_F_contig1000.58.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1000 3206..3328 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815523.3412845-UTR-S-firma_F_contig1000:3043..32051622815523.3412845-UTR-S-firma_F_contig1000:3043..3205Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1000 3044..3205 +
1696949386.0205643-UTR-S-firma_F_contig1000:3043..32051696949386.0205643-UTR-S-firma_F_contig1000:3043..3205Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1000 3044..3205 +
1622815523.3649838-UTR-S-firma_F_contig1000:3328..34931622815523.3649838-UTR-S-firma_F_contig1000:3328..3493Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1000 3329..3493 +
1696949386.1666067-UTR-S-firma_F_contig1000:3328..34931696949386.1666067-UTR-S-firma_F_contig1000:3328..3493Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1000 3329..3493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815523.35371-CDS-S-firma_F_contig1000:3205..33281622815523.35371-CDS-S-firma_F_contig1000:3205..3328Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 3206..3328 +
1696949386.142675-CDS-S-firma_F_contig1000:3205..33281696949386.142675-CDS-S-firma_F_contig1000:3205..3328Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1000 3206..3328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1000.58.1

>prot_S-firma_F_contig1000.58.1 ID=prot_S-firma_F_contig1000.58.1|Name=mRNA_S-firma_F_contig1000.58.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=41bp
MPWAGVEDLKRSRRAHRERLEELLSACVGAMPFEPRGGGW*
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mRNA from alignment at S-firma_F_contig1000:3044..3493+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1000.58.1 ID=mRNA_S-firma_F_contig1000.58.1|Name=mRNA_S-firma_F_contig1000.58.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=450bp|location=Sequence derived from alignment at S-firma_F_contig1000:3044..3493+ (Sphaerotrichia firma ET2_F female)
CAAGAAGAAGAAGCGGCGAGAGGCCGGAGCGGCGGCGGCGGCGGCGGCGG
CGAGGGGGGCACCGTGTTTGCTTGTTTCGAGACGAAACCACCGCGGAACC
GCCACCAACACCAACACCCTGCGGTAGCCTCAGGCGAAAGCGCTGCTGAG
GAGGGCCGCAGGATGCCTTGGGCAGGGGTCGAGGACCTGAAGCGATCTAG
GAGGGCGCACAGGGAGAGGCTGGAAGAGCTCCTGTCTGCCTGCGTCGGAG
CTATGCCGTTTGAGCCGCGAGGGGGGGGCTGGTAGCTTGGTGTGATTGGA
CTGACATGGGTCAGTGAGGGCCTGACGTTGGTTGGTTGCTTCCTCGTTGT
ACGAAAACAATGTTTGATACCGCATACCTCACCTTGCCGAGTGATAACCG
TGTGATTTGTCTGTCTTCTCCGCCGCCTCCCTCTCACTCTCTTGGTGCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig1000:3044..3493+

>mRNA_S-firma_F_contig1000.58.1 ID=mRNA_S-firma_F_contig1000.58.1|Name=mRNA_S-firma_F_contig1000.58.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=246bp|location=Sequence derived from alignment at S-firma_F_contig1000:3044..3493+ (Sphaerotrichia firma ET2_F female)
ATGCCTTGGGCAGGGGTCGAGGACCTGAAGCGATCTAGGAGGGCGCACAG
GGAGAGGCTGGAAGAGCTCCTGTCTGCCTGCGTCGGAGCTATGCCGTTTG
AGCCGCGAGGGGGGGGCTGGTAGATGCCTTGGGCAGGGGTCGAGGACCTG
AAGCGATCTAGGAGGGCGCACAGGGAGAGGCTGGAAGAGCTCCTGTCTGC
CTGCGTCGGAGCTATGCCGTTTGAGCCGCGAGGGGGGGGCTGGTAG
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