prot_S-firma_F_contig1000.58.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1000.58.1
Unique Nameprot_S-firma_F_contig1000.58.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length41
Homology
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BLAST of mRNA_S-firma_F_contig1000.58.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.830e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0 
Query:    3 WAGVEDLKRSRRAHRERLEELLSACVGAMPFEPRGGGW 40
            WAG   L+RSR A+RERLE LLSACV AMP EPRGGGW
Sbjct: 1008 WAGSSALERSRVANRERLESLLSACVEAMPLEPRGGGW 1045
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1000.58.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBF2_9PHAE1.830e-1176.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1000contigS-firma_F_contig1000:3206..3328 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1000.58.1mRNA_S-firma_F_contig1000.58.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1000 3044..3493 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1000.58.1 ID=prot_S-firma_F_contig1000.58.1|Name=mRNA_S-firma_F_contig1000.58.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=41bp
MPWAGVEDLKRSRRAHRERLEELLSACVGAMPFEPRGGGW*
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