mRNA_S-ischiensis_contig81.19855.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig81.19855.1
Unique NamemRNA_S-ischiensis_contig81.19855.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A6H5L4L2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L2_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 1.480e-67
Identity = 139/389 (35.73%), Postives = 212/389 (54.50%), Query Frame = 1
Query:   10 PEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*-RDLPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
            P+GF    ++ + LV +LK  LYGL+ SP+ W+ T H FLL+ G VPS  DPC+Y   G      ++++ +YVDD+LLTGA    V T+++ M  RF+T DLG A ++LGM I+ + +  T+ L Q+ Y   +L +FGM    +  TP + +      +  L P    ++R   GS+LY+ R +RPDIS++V+ L++ ++KP    +A  KRL  YLKGTT+L I Y    +      L  Y D+D+ GDL  R S TG   +    P + T S            + +   ++A K+    R L  +   EQ   T ++ED+ +AI    S   +  TKHI ++YH +R LI + +V+++ I T  Q+AD LTK L    F + R  L
Sbjct:   44 PKGFT-CSQEQTKLVWRLKAWLYGLRLSPKSWNGTFHLFLLEIGFVPSTADPCLYTLNGG-----EVILLVYVDDILLTGAKEELVTTIIEQMKERFETVDLGEAKFILGMAIQRNLEAGTILLTQEAYTKAVLAKFGMADVRATATPAEKEPVTTKEENALSPEQTTMFRSATGSVLYISRGSRPDISHSVLVLTKSMAKPGPKALAKLKRLMRYLKGTTSLGITYRKDAQGGDK--LTAYVDSDFAGDLDDRISTTGVVLTLAGGP-VDTTSEKQTVTATSSAEAEYVAMSKACKMILHWRHLLKTINREQTEATVLFEDSTAAISASESNKVTQKTKHIDVKYHHVRSLIVNKVVEVKKIDTNLQKADMLTKNLGTVKFLNNRRQL 423          
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 229 bits (584), Expect = 8.380e-67
Identity = 138/402 (34.33%), Postives = 214/402 (53.23%), Query Frame = 1
Query:    1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*RDLPSSPGAEQ--------------QSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIR 1164
            ++QP+G+ K G++  HLVC+LK+S+YGLKQSPR W  T    + D G   S  DPCV+++  +   +    +++YVDD++L   +  S+  L  ++  ++  +D+G  +Y+LG+ +   +   +++L QK Y + +L ++GMD+ N V TP D++        +  P + G Y+ I+GSLLY    TRPDI+ AV  +S+  +KP   HM A KR+  YLKGT  L +KY  S     +  L G+ DAD+ GD   R+S TG  +       LG  + S  S K           T A+  +    +  S  A++               +PT I EDNQ AI + ++    S TKHI IRYH IR+ + +  + L++  T   +AD LTK L  Q F  +R
Sbjct:  125 MEQPDGYIKPGQE--HLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFVRARQELEI----LAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDGVSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQRS----ESETLLGFSDADWAGDQDDRRSTTGNIFL------LGGGAVSWLSKKQN---------TVALSTAEAEYVALSQAAQECTWLTRLLSDLGMDATPTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQNGQIQLQYCPTEDMKADILTKPLAKQKFEYLR 501          
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A6H5KEW2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEW2_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 1.120e-64
Identity = 138/389 (35.48%), Postives = 212/389 (54.50%), Query Frame = 1
Query:   10 PEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*-RDLPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
            P+GF    ++ + LV +LK  LYGL+ SP+ W+ T H FLL+ G VPS  DPC+Y   G      ++++ + VDD+LLTGA    V T+++ M  RF+T DLG A ++LGM I+ + +  T+ L Q+ Y   +L +FGM    +  TP + +      +  L P    ++R   GS+LY+ R +RPDIS++V+ L++ ++KP    +A  KRL  YLKGTT+L I Y    +      L  Y D+D+ GDL  RKS TG   +    P + T S            + +   ++A K+    R L  +   EQ   T ++ED+ +AI    S   +  TKHI +++H +R LI + +V+++ I T  Q+AD LTK L    F + R  L
Sbjct:  301 PKGFT-CSQEQTKLVWRLKAWLYGLRLSPKSWNGTFHLFLLEIGFVPSTADPCLYTLNGG-----EVILLVDVDDILLTGAKEELVTTIIEQMKERFETVDLGEAKFILGMAIQRNLEAGTILLTQEAYTKAVLAKFGMADVRATATPAEKEPVTTKEENALSPEQTTMFRSATGSVLYISRGSRPDISHSVLVLTKSMAKPGPKALAKLKRLMRYLKGTTSLGITYRKDAQGGDK--LTAYVDSDFAGDLDDRKSTTGVVLTLAGGP-VDTTSVKQTVTATSSAEAEYVAMSKACKMILHWRHLLKTINREQTEATVLFEDSTAAISTSESNKVTQKTKHIDVKHHHVRSLIVNKVVEVKRIDTNLQKADMLTKNLGTVKFLNNRRQL 680          
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: X1X8M7_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1X8M7_ACYPI)

HSP 1 Score: 228 bits (580), Expect = 6.570e-64
Identity = 148/399 (37.09%), Postives = 222/399 (55.64%), Query Frame = 1
Query:    1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSDNFHPVGQTLLEPTDHGI--YREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LG---TPSCSH*SHKAQQRTST--F**PTRAMKLST*RDLPSSPGAEQQSPTAI-YEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
            +KQP+G+E    DG+ LVC+L+RSLYGLKQ+PR W+      L++  L  ++ DPCV++   KN+ L  L+++I+VDD L+   N   V+T++  +   F+T++ G   + LG+ I    D  ++ + Q  Y   IL RF MD  N +  P D    H +   L    + G   YRE +GSLLYL ++TRPDI++AV  +SR + KP  IH  A KR+  YLKGT    + Y  S+    TP L GY DADY GD  TR+S +G+ +       +G      CS         T+   +   +++++  T   L  S   E Q  T + Y DNQSAI LV++  +   TKHI +RYH IR+ +++ +  LE++ +  Q AD LTK      F+++RE+L
Sbjct:  410 MKQPKGYE----DGTQLVCKLQRSLYGLKQAPRCWNKKFKNMLMNFDLKETKADPCVFVSN-KNNQL--LIVAIFVDDGLIAATNNELVDTMVNYLKDNFETKE-GELDHFLGIGIDQRPD-GSIFIHQSSYCKRILERFNMDEANVLHIPTDPQ--HSLDPNLSGSLEAGEVPYRESVGSLLYLSQITRPDITFAVNLVSRYLEKPLTIHWNAVKRIFKYLKGTFNYGLIYDYSV----TPKLRGYSDADYAGDTTTRRSTSGFIFM------MGDGIVAWCSQRQKSVALSTTEAEYIALSQSIQELTWLTLLISDLLETQGDTPVLYADNQSAIKLVKNPEYHKQTKHIDVRYHYIREKLSEGMFSLEYVPSKEQLADILTKPTPRPRFQELREML 787          
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A329RKH9_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RKH9_9STRA)

HSP 1 Score: 219 bits (558), Expect = 8.580e-64
Identity = 143/404 (35.40%), Postives = 205/404 (50.74%), Query Frame = 1
Query:    7 QPEGFEKTGKDGSH--LVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSD----NFHPVGQTLLEPTDHGI-YREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*RD--------LPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
            QP+G+    KD  H   VCQL+RSLYGLKQSPR+W+ T+  F+L+ G    E + C+Y+KR     +    +++YVDD++L   N   +++  K++S RFD  DLG   Y LGMEI        + + Q K+A DIL +FGM+  N V TP D      N    G    E T   + YR  +G L+YL   TRPD++ AV  LS+  + P   H  A KR+  Y+KGT T  I+    I+  +   L+GY DAD+ GD+ TR+S +GY +       +    C     K Q   +        M L+            L      +   P  IYEDNQ +I L ++  +   TKHI IRYH +R+ + D  V L++  T   +AD +TK +    F  +R  L
Sbjct:   20 QPDGY----KDEEHPDYVCQLQRSLYGLKQSPRMWNQTIDNFMLELGFKKCEANHCIYVKRDDQDMI---FVALYVDDLVLASNNDKLLKSTKKALSERFDMTDLGHLKYFLGMEIDQDVVTGKVSMRQTKFAKDILEKFGMEHSNPVKTPQDPGLKLTNTMCEGGCKHEETMAKVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPAHWQAHKRVFRYIKGTRTHGIE----IQAASEDGLQGYSDADWAGDVETRRSTSGYAF-------MMNSGCISWRSKKQWTVALSSTEAEYMALTEAAQGTIWLKAFLCELGEMKSDDPVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVRERVEDGQVVLQYCSTKDMKADLMTKPITAVQFESLRSKL 405          
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: UPI001028384D (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Enterobacteriaceae TaxID=543 RepID=UPI001028384D)

HSP 1 Score: 218 bits (555), Expect = 8.960e-63
Identity = 144/402 (35.82%), Postives = 215/402 (53.48%), Query Frame = 1
Query:    1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFN--SVPTPGD---SDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTST-----F**PTRAMKLST*RD-LPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
            ++QPEGF + GK+    VCQL +SLYGLKQSPR W+   H F+L  G   SE D C+Y K+ K+     L++ +YVDD+L+ G +   +  L   M+  FD +D+G A+++LGM I+  R  + + L Q +Y D +L RF M++    SVP P     S    PV +      D   Y   +GSL+Y    TRPDI++AV  +SR +S P   H  A K +  YLK T ++ I Y GS        ++G+ D+DY GDL  R+S +GY ++      L   + S  S      T +     +   + A K S   + L +  G +++ P  +Y D+QSAI L R+  + S TKH+ ++YH IR+++ D  + L  + T    AD LTK L  + F   R+ L
Sbjct:   97 MQQPEGFVEKGKED--WVCQLLKSLYGLKQSPRAWYHKFHKFMLSQGYKRSEFDHCLYTKKAKDGSW--LILILYVDDMLIAGKHLEEISALKSKMAKSFDMKDMGEASHILGMRIERDRSKKLIWLSQTEYIDKVLQRFNMEKGKALSVPLPPYVKLSKQDCPVSEEEQAEMDKIPYASAVGSLMYAMIATRPDIAFAVGVVSRYMSNPGKKHWEAVKGILRYLKATKSMRICY-GSQELS----VKGFTDSDYAGDLDNRRSTSGYVFT------LAGGAVSWRSRLQDCVTQSTTEAEYVAASEACKESIWLNRLVTDLGIKEEMPV-LYCDSQSAIQLARNPVYHSKTKHVDVKYHFIREMLEDKQLQLVKVHTTENPADLLTKGLPSESFAHFRKQL 482          
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A4Y1REE4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REE4_PRUDU)

HSP 1 Score: 216 bits (550), Expect = 1.640e-62
Identity = 144/402 (35.82%), Postives = 218/402 (54.23%), Query Frame = 1
Query:    1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTP---GDSDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSI--RPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRT-----STF**PTR-AMKLST*RDLPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
            + QP G+ + GK+    V +LK++LYGLKQ+PR W++ + +  L AG      +  +++K GK   +  L++ +YVDD++ TG N +  +   KSM   F+  DLG   Y LG+E+K + +   + + QKKYA++IL RF M+  NSV  P   G   N    G+ +    D   +++I+GSL+YL   TRPD+ +AV  +SR +  P  +H   AKR+  YLKGTT L + Y      +      L G+ D+DY GDL  RKS +GY +       L + + S  S K    T     + F   T  A +    R L      +Q  PT I+ DN SAI L R+      +KHI +R+H +R L+ +++++LEH  +  Q AD LTK LK + F  +R+LL
Sbjct:   10 IDQPPGYVQRGKEQK--VYRLKKALYGLKQAPRAWYSRIESHFLKAGFTKCPYEHTLFVKHGKECEI--LIVCLYVDDLIFTGNNEDMFKEFKKSMLEEFEMTDLGKMHYFLGIEVKQTSN--GVFIGQKKYAEEILKRFHMEDCNSVQNPIVPGTKLNKDVGGREV----DSTHFKQIVGSLMYLTA-TRPDLMFAVSLISRYMESPTELHYQTAKRVLRYLKGTTDLGLFYKKETINKKEAGDELMGFSDSDYAGDLDDRKSTSGYVFM------LSSAAVSWSSKKQPVVTLSTTEAEFIAATSSACQAVWLRRLLEELCFKQDKPTVIFCDNSSAIKLSRNPVMHGRSKHIDVRFHFLRDLVKNEVIELEHCPSNMQVADILTKPLKLEAFVKMRKLL 394          
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A151R8N8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R8N8_CAJCA)

HSP 1 Score: 214 bits (546), Expect = 1.760e-62
Identity = 147/405 (36.30%), Postives = 208/405 (51.36%), Query Frame = 1
Query:    1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGD-SDNFHPVGQTLLEPTDHGI----YREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*---------RDLPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
            +KQPEGF K GK+    VCQL++SLYGLKQSPR W+     F++  G   S  D CVY K+ ++  +  LL+  YVDD+L+   N + ++ L   +S  FD ++LG A  +LGMEI   R  + L LCQK Y   ILHRFGM     + TP    +    V QTL +   + +    Y   +GSL+Y    TRPD++YAV  +SR +++P   H  A KR+   L+GT+ + + Y  +    T   L GY DADY  DL  RKS TGY +         T      S KA  ++S     T A  ++           + L S  G +Q+    I+ D+ SAI L + +     TKHI +RYH I   I++  + ++ I TL   AD  TK +    F    +LL
Sbjct:    1 MKQPEGFVKLGKED--YVCQLQKSLYGLKQSPRQWYKRFDTFMISKGFNKSPYDCCVYHKKVEDGFMIYLLL--YVDDILIAAKNKSEIQNLKALLSGEFDMKNLGAAKKILGMEIYRDRSQKKLFLCQKDYIQKILHRFGMHNAKPLSTPMSVKEKLKNVAQTLSQTEQNNVLQVPYASAVGSLMYTMVCTRPDLAYAVSVVSRYLNQPQKEHWQAVKRIFRNLRGTSDIGLIYGAN----TNCCLAGYSDADYAADLDGRKSITGYAF---------TLKSYLVSWKATLQSSVALSTTEAEYMALTEAAKEGIWLKGLISDLGVKQEH-ALIFCDSLSAICLAKDQVHHERTKHIDVRYHFI---ISERRIKVQKIDTLHNPADMFTKFVPKSKFFHCLDLL 384          
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.910e-62
Identity = 140/397 (35.26%), Postives = 207/397 (52.14%), Query Frame = 1
Query:    1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*---------RDLPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIR 1164
            +KQP G+EK G +G  LVC+L++SLYGLKQS R WH  +  +    GL PS  DPC+Y+K   +  +  L++ +YVDD+++   +    +   + +S  F  +DL    ++LGM IK +R+ RT+ + Q  Y   +L++FGM    SV TP +       G+ +    +   Y +++GSLLY   +TRPDI++AV  L + +      H  AAKR+  YLKGT  + +KY G+     T  L GY DADY GD   R+S +GYT++      + T        KA+Q+         +  +S           R L    G +Q  PT I EDNQ+ I +  +      TKHI +RYH +R+ +    V+L +I T  Q AD LTK L       IR
Sbjct:  321 IKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI--LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDNE---YMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGSFT--LVGYADADYAGDKDNRRSTSGYTFTLSHGDDVNTIDW-----KAKQQDVVALSSAESELISACSATQNAVYIRQLLMDLGFKQDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPLSSIRLAMIR 705          
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 226 bits (575), Expect = 5.910e-62
Identity = 137/400 (34.25%), Postives = 214/400 (53.50%), Query Frame = 1
Query:    1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIK--RGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*-------RDLPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
            +KQPEG+    ++    VC+L RS+YGLKQ+ R W++ +  FL+  G   S  DPC+YIK  + KN  +  +++++YVDD+L    N   ++   ++++ RF  +D+G  +Y+LGM +K +R+ RTL + Q KY + +L RFGM    +V TP +             P D   Y+  IG L Y    TRPD++ AV  LS+ +++P   H    KR+  Y+KGT    + +         PVL GY DAD+GGD+ TR+S +GY +   ++       CS    K Q   S        + LST        R L S  G +Q  P+ I+EDNQ AI L ++  + + TKHI + +H IR+ +  +IV +++  T +  AD +TK L    F   R+++
Sbjct:  941 MKQPEGY--VDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVLKRFGMQECKAVSTPLEPGRKFESLSENDTPIDVREYQMAIGCLTYATNATRPDLAAAVGILSKYMARPGKDHWQGVKRVLRYVKGTLHSGLTFTAH---GNNPVLYGYADADWGGDVETRRSTSGYVF---QIQNNTISWCS----KRQASVSRSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPSTIFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENMLADVMTKALPKVSFERFRDMM 1328          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4L2_9PHAE1.480e-6735.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0HFF8_LARCR8.380e-6734.33Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A6H5KEW2_9PHAE1.120e-6435.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
X1X8M7_ACYPI6.570e-6437.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A329RKH9_9STRA8.580e-6435.40Retrovirus-related Pol polyprotein from transposon... [more]
UPI001028384D8.960e-6335.82Ty1/Copia family RNAse HI domain-containing protei... [more]
A0A4Y1REE4_PRUDU1.640e-6235.82Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A151R8N8_CAJCA1.760e-6236.30Retrovirus-related Pol polyprotein from transposon... [more]
W7TJ26_9STRA1.910e-6235.26Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A6S7HNY1_PARCT5.910e-6234.25Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig81contigS-ischiensis_contig81:15609..16781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue1e-30
Seed eggNOG ortholog164328.Phyra75833
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3Q8Z1@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1173
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig81.19855.1prot_S-ischiensis_contig81.19855.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig81 15822..16409 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817311.5888066-UTR-S-ischiensis_contig81:15608..158211622817311.5888066-UTR-S-ischiensis_contig81:15608..15821Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 15609..15821 +
1695741017.223213-UTR-S-ischiensis_contig81:15608..158211695741017.223213-UTR-S-ischiensis_contig81:15608..15821Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 15609..15821 +
1622817311.6122909-UTR-S-ischiensis_contig81:16409..167811622817311.6122909-UTR-S-ischiensis_contig81:16409..16781Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 16410..16781 +
1695741017.2475457-UTR-S-ischiensis_contig81:16409..167811695741017.2475457-UTR-S-ischiensis_contig81:16409..16781Schizocladia ischiensis KU_0333UTRS-ischiensis_contig81 16410..16781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817311.6007013-CDS-S-ischiensis_contig81:15821..164091622817311.6007013-CDS-S-ischiensis_contig81:15821..16409Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 15822..16409 +
1695741017.2370086-CDS-S-ischiensis_contig81:15821..164091695741017.2370086-CDS-S-ischiensis_contig81:15821..16409Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 15822..16409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig81.19855.1

>prot_S-ischiensis_contig81.19855.1 ID=prot_S-ischiensis_contig81.19855.1|Name=mRNA_S-ischiensis_contig81.19855.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=196bp
MSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRD
LRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSDNFHPVGQTLLEPTDHG
IYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLK
GTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*
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mRNA from alignment at S-ischiensis_contig81:15609..16781+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig81.19855.1 ID=mRNA_S-ischiensis_contig81.19855.1|Name=mRNA_S-ischiensis_contig81.19855.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1173bp|location=Sequence derived from alignment at S-ischiensis_contig81:15609..16781+ (Schizocladia ischiensis KU_0333)
GTCAAACAACCTGAGGGTTTTGAGAAAACTGGCAAGGATGGCTCCCATCT TGTCTGTCAGCTCAAAAGAAGCCTCTATGGCCTGAAGCAGTCTCCTAGAC TGTGGCATGCCACTTTGCATGCCTTCCTGCTTGATGCAGGGTTGGTTCCA AGTGAAATCGACCCCTGTGTGTACATCAAGAGGGGGAAAAATTCGGGCCT GCCTGATTTATTGATGTCCATCTACGTGGACGATGTACTTCTCACAGGGG CTAATCCAAATTCTGTGGAAACACTTCTCAAATCTATGTCAGCCAGGTTT GATACACAAGACCTTGGCACAGCTGCTTACCTGCTAGGCATGGAGATCAA ACATAGTCGTGACTTGCGCACGCTCCACCTTTGCCAAAAGAAGTACGCTG ATGACATACTCCACAGATTTGGTATGGACCGTTTTAACTCTGTGCCAACC CCAGGGGATTCTGATAACTTCCACCCTGTTGGGCAGACACTGCTTGAGCC CACTGACCATGGCATATACCGAGAAATTATTGGTTCTCTGCTATATCTGT GCCGGCTCACAAGGCCTGACATTTCATACGCAGTGATGCAACTTTCTCGT GTGGTCTCTAAACCATATGCCATTCACATGGCTGCAGCCAAACGCCTACC TGGGTACCTAAAGGGCACTACCACACTTTGTATTAAGTACCTTGGCAGTA TAAGACCTCCCACAACTCCGGTTCTGGAAGGCTATTGTGATGCCGATTAT GGGGGCGACCTTGCCACTCGAAAGAGCTGTACAGGCTACACATATTCCTA GCCCAAGGTCCCATAGCTTGGTACTCCAAGCTGCAGTCATTAGTCGCACA AAGCTCAACAGAGAACGAGTACATTTTGATAGCCCACGCGGGCAATGAAG CTATCTACTTAACGCGACTTGCCCTCTTCTCCAGGAGCTGAGCAACAAAG TCCGACTGCTATCTACGAAGATAACCAAAGCGCTATTCATCTCGTGCGCA GCGAAGGATGGAGCAGCCACACGAAGCACATTGCGATTCGTTACCATCGC ATTCGTCAACTCATCACTGACGATATCGTCGACCTTGAGCACATCGGGAC ACTCTCCCAACGTGCCGACTGCCTCACCAAGCAGTTAAAGGGCCAGCACT TCCGCGACATCCGGGAACTGCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig81:15609..16781+

>mRNA_S-ischiensis_contig81.19855.1 ID=mRNA_S-ischiensis_contig81.19855.1|Name=mRNA_S-ischiensis_contig81.19855.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1176bp|location=Sequence derived from alignment at S-ischiensis_contig81:15609..16781+ (Schizocladia ischiensis KU_0333)
ATGTCCATCTACGTGGACGATGTACTTCTCACAGGGGCTAATCCAAATTC
TGTGGAAACACTTCTCAAATCTATGTCAGCCAGGTTTGATACACAAGACC
TTGGCACAGCTGCTTACCTGCTAGGCATGGAGATCAAACATAGTCGTGAC
TTGCGCACGCTCCACCTTTGCCAAAAGAAGTACGCTGATGACATACTCCA
CAGATTTGGTATGGACCGTTTTAACTCTGTGCCAACCCCAGGGGATTCTG
ATAACTTCCACCCTGTTGGGCAGACACTGCTTGAGCCCACTGACCATGGC
ATATACCGAGAAATTATTGGTTCTCTGCTATATCTGTGCCGGCTCACAAG
GCCTGACATTTCATACGCAGTGATGCAACTTTCTCGTGTGGTCTCTAAAC
CATATGCCATTCACATGGCTGCAGCCAAACGCCTACCTGGGTACCTAAAG
GGCACTACCACACTTTGTATTAAGTACCTTGGCAGTATAAGACCTCCCAC
AACTCCGGTTCTGGAAGGCTATTGTGATGCCGATTATGGGGGCGACCTTG
CCACTCGAAAGAGCTGTACAGGCTACACATATTCCTAGATGTCCATCTAC
GTGGACGATGTACTTCTCACAGGGGCTAATCCAAATTCTGTGGAAACACT
TCTCAAATCTATGTCAGCCAGGTTTGATACACAAGACCTTGGCACAGCTG
CTTACCTGCTAGGCATGGAGATCAAACATAGTCGTGACTTGCGCACGCTC
CACCTTTGCCAAAAGAAGTACGCTGATGACATACTCCACAGATTTGGTAT
GGACCGTTTTAACTCTGTGCCAACCCCAGGGGATTCTGATAACTTCCACC
CTGTTGGGCAGACACTGCTTGAGCCCACTGACCATGGCATATACCGAGAA
ATTATTGGTTCTCTGCTATATCTGTGCCGGCTCACAAGGCCTGACATTTC
ATACGCAGTGATGCAACTTTCTCGTGTGGTCTCTAAACCATATGCCATTC
ACATGGCTGCAGCCAAACGCCTACCTGGGTACCTAAAGGGCACTACCACA
CTTTGTATTAAGTACCTTGGCAGTATAAGACCTCCCACAACTCCGGTTCT
GGAAGGCTATTGTGATGCCGATTATGGGGGCGACCTTGCCACTCGAAAGA
GCTGTACAGGCTACACATATTCCTAG
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