mRNA_S-ischiensis_contig81.19855.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A6H5L4L2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L2_9PHAE) HSP 1 Score: 229 bits (583), Expect = 1.480e-67 Identity = 139/389 (35.73%), Postives = 212/389 (54.50%), Query Frame = 1
Query: 10 PEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*-RDLPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
P+GF ++ + LV +LK LYGL+ SP+ W+ T H FLL+ G VPS DPC+Y G ++++ +YVDD+LLTGA V T+++ M RF+T DLG A ++LGM I+ + + T+ L Q+ Y +L +FGM + TP + + + L P ++R GS+LY+ R +RPDIS++V+ L++ ++KP +A KRL YLKGTT+L I Y + L Y D+D+ GDL R S TG + P + T S + + ++A K+ R L + EQ T ++ED+ +AI S + TKHI ++YH +R LI + +V+++ I T Q+AD LTK L F + R L
Sbjct: 44 PKGFT-CSQEQTKLVWRLKAWLYGLRLSPKSWNGTFHLFLLEIGFVPSTADPCLYTLNGG-----EVILLVYVDDILLTGAKEELVTTIIEQMKERFETVDLGEAKFILGMAIQRNLEAGTILLTQEAYTKAVLAKFGMADVRATATPAEKEPVTTKEENALSPEQTTMFRSATGSVLYISRGSRPDISHSVLVLTKSMAKPGPKALAKLKRLMRYLKGTTSLGITYRKDAQGGDK--LTAYVDSDFAGDLDDRISTTGVVLTLAGGP-VDTTSEKQTVTATSSAEAEYVAMSKACKMILHWRHLLKTINREQTEATVLFEDSTAAISASESNKVTQKTKHIDVKYHHVRSLIVNKVVEVKKIDTNLQKADMLTKNLGTVKFLNNRRQL 423
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR) HSP 1 Score: 229 bits (584), Expect = 8.380e-67 Identity = 138/402 (34.33%), Postives = 214/402 (53.23%), Query Frame = 1
Query: 1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*RDLPSSPGAEQ--------------QSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIR 1164
++QP+G+ K G++ HLVC+LK+S+YGLKQSPR W T + D G S DPCV+++ + + +++YVDD++L + S+ L ++ ++ +D+G +Y+LG+ + + +++L QK Y + +L ++GMD+ N V TP D++ + P + G Y+ I+GSLLY TRPDI+ AV +S+ +KP HM A KR+ YLKGT L +KY S + L G+ DAD+ GD R+S TG + LG + S S K T A+ + + S A++ +PT I EDNQ AI + ++ S TKHI IRYH IR+ + + + L++ T +AD LTK L Q F +R
Sbjct: 125 MEQPDGYIKPGQE--HLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFVRARQELEI----LAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDGVSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQRS----ESETLLGFSDADWAGDQDDRRSTTGNIFL------LGGGAVSWLSKKQN---------TVALSTAEAEYVALSQAAQECTWLTRLLSDLGMDATPTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQNGQIQLQYCPTEDMKADILTKPLAKQKFEYLR 501
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A6H5KEW2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEW2_9PHAE) HSP 1 Score: 228 bits (580), Expect = 1.120e-64 Identity = 138/389 (35.48%), Postives = 212/389 (54.50%), Query Frame = 1
Query: 10 PEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*-RDLPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
P+GF ++ + LV +LK LYGL+ SP+ W+ T H FLL+ G VPS DPC+Y G ++++ + VDD+LLTGA V T+++ M RF+T DLG A ++LGM I+ + + T+ L Q+ Y +L +FGM + TP + + + L P ++R GS+LY+ R +RPDIS++V+ L++ ++KP +A KRL YLKGTT+L I Y + L Y D+D+ GDL RKS TG + P + T S + + ++A K+ R L + EQ T ++ED+ +AI S + TKHI +++H +R LI + +V+++ I T Q+AD LTK L F + R L
Sbjct: 301 PKGFT-CSQEQTKLVWRLKAWLYGLRLSPKSWNGTFHLFLLEIGFVPSTADPCLYTLNGG-----EVILLVDVDDILLTGAKEELVTTIIEQMKERFETVDLGEAKFILGMAIQRNLEAGTILLTQEAYTKAVLAKFGMADVRATATPAEKEPVTTKEENALSPEQTTMFRSATGSVLYISRGSRPDISHSVLVLTKSMAKPGPKALAKLKRLMRYLKGTTSLGITYRKDAQGGDK--LTAYVDSDFAGDLDDRKSTTGVVLTLAGGP-VDTTSVKQTVTATSSAEAEYVAMSKACKMILHWRHLLKTINREQTEATVLFEDSTAAISTSESNKVTQKTKHIDVKHHHVRSLIVNKVVEVKRIDTNLQKADMLTKNLGTVKFLNNRRQL 680
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: X1X8M7_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1X8M7_ACYPI) HSP 1 Score: 228 bits (580), Expect = 6.570e-64 Identity = 148/399 (37.09%), Postives = 222/399 (55.64%), Query Frame = 1
Query: 1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSDNFHPVGQTLLEPTDHGI--YREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LG---TPSCSH*SHKAQQRTST--F**PTRAMKLST*RDLPSSPGAEQQSPTAI-YEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
+KQP+G+E DG+ LVC+L+RSLYGLKQ+PR W+ L++ L ++ DPCV++ KN+ L L+++I+VDD L+ N V+T++ + F+T++ G + LG+ I D ++ + Q Y IL RF MD N + P D H + L + G YRE +GSLLYL ++TRPDI++AV +SR + KP IH A KR+ YLKGT + Y S+ TP L GY DADY GD TR+S +G+ + +G CS T+ + +++++ T L S E Q T + Y DNQSAI LV++ + TKHI +RYH IR+ +++ + LE++ + Q AD LTK F+++RE+L
Sbjct: 410 MKQPKGYE----DGTQLVCKLQRSLYGLKQAPRCWNKKFKNMLMNFDLKETKADPCVFVSN-KNNQL--LIVAIFVDDGLIAATNNELVDTMVNYLKDNFETKE-GELDHFLGIGIDQRPD-GSIFIHQSSYCKRILERFNMDEANVLHIPTDPQ--HSLDPNLSGSLEAGEVPYRESVGSLLYLSQITRPDITFAVNLVSRYLEKPLTIHWNAVKRIFKYLKGTFNYGLIYDYSV----TPKLRGYSDADYAGDTTTRRSTSGFIFM------MGDGIVAWCSQRQKSVALSTTEAEYIALSQSIQELTWLTLLISDLLETQGDTPVLYADNQSAIKLVKNPEYHKQTKHIDVRYHYIREKLSEGMFSLEYVPSKEQLADILTKPTPRPRFQELREML 787
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A329RKH9_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RKH9_9STRA) HSP 1 Score: 219 bits (558), Expect = 8.580e-64 Identity = 143/404 (35.40%), Postives = 205/404 (50.74%), Query Frame = 1
Query: 7 QPEGFEKTGKDGSH--LVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSD----NFHPVGQTLLEPTDHGI-YREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*RD--------LPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
QP+G+ KD H VCQL+RSLYGLKQSPR+W+ T+ F+L+ G E + C+Y+KR + +++YVDD++L N +++ K++S RFD DLG Y LGMEI + + Q K+A DIL +FGM+ N V TP D N G E T + YR +G L+YL TRPD++ AV LS+ + P H A KR+ Y+KGT T I+ I+ + L+GY DAD+ GD+ TR+S +GY + + C K Q + M L+ L + P IYEDNQ +I L ++ + TKHI IRYH +R+ + D V L++ T +AD +TK + F +R L
Sbjct: 20 QPDGY----KDEEHPDYVCQLQRSLYGLKQSPRMWNQTIDNFMLELGFKKCEANHCIYVKRDDQDMI---FVALYVDDLVLASNNDKLLKSTKKALSERFDMTDLGHLKYFLGMEIDQDVVTGKVSMRQTKFAKDILEKFGMEHSNPVKTPQDPGLKLTNTMCEGGCKHEETMAKVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPAHWQAHKRVFRYIKGTRTHGIE----IQAASEDGLQGYSDADWAGDVETRRSTSGYAF-------MMNSGCISWRSKKQWTVALSSTEAEYMALTEAAQGTIWLKAFLCELGEMKSDDPVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVRERVEDGQVVLQYCSTKDMKADLMTKPITAVQFESLRSKL 405
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: UPI001028384D (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Enterobacteriaceae TaxID=543 RepID=UPI001028384D) HSP 1 Score: 218 bits (555), Expect = 8.960e-63 Identity = 144/402 (35.82%), Postives = 215/402 (53.48%), Query Frame = 1
Query: 1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFN--SVPTPGD---SDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTST-----F**PTRAMKLST*RD-LPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
++QPEGF + GK+ VCQL +SLYGLKQSPR W+ H F+L G SE D C+Y K+ K+ L++ +YVDD+L+ G + + L M+ FD +D+G A+++LGM I+ R + + L Q +Y D +L RF M++ SVP P S PV + D Y +GSL+Y TRPDI++AV +SR +S P H A K + YLK T ++ I Y GS ++G+ D+DY GDL R+S +GY ++ L + S S T + + + A K S + L + G +++ P +Y D+QSAI L R+ + S TKH+ ++YH IR+++ D + L + T AD LTK L + F R+ L
Sbjct: 97 MQQPEGFVEKGKED--WVCQLLKSLYGLKQSPRAWYHKFHKFMLSQGYKRSEFDHCLYTKKAKDGSW--LILILYVDDMLIAGKHLEEISALKSKMAKSFDMKDMGEASHILGMRIERDRSKKLIWLSQTEYIDKVLQRFNMEKGKALSVPLPPYVKLSKQDCPVSEEEQAEMDKIPYASAVGSLMYAMIATRPDIAFAVGVVSRYMSNPGKKHWEAVKGILRYLKATKSMRICY-GSQELS----VKGFTDSDYAGDLDNRRSTSGYVFT------LAGGAVSWRSRLQDCVTQSTTEAEYVAASEACKESIWLNRLVTDLGIKEEMPV-LYCDSQSAIQLARNPVYHSKTKHVDVKYHFIREMLEDKQLQLVKVHTTENPADLLTKGLPSESFAHFRKQL 482
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A4Y1REE4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REE4_PRUDU) HSP 1 Score: 216 bits (550), Expect = 1.640e-62 Identity = 144/402 (35.82%), Postives = 218/402 (54.23%), Query Frame = 1
Query: 1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTP---GDSDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSI--RPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRT-----STF**PTR-AMKLST*RDLPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
+ QP G+ + GK+ V +LK++LYGLKQ+PR W++ + + L AG + +++K GK + L++ +YVDD++ TG N + + KSM F+ DLG Y LG+E+K + + + + QKKYA++IL RF M+ NSV P G N G+ + D +++I+GSL+YL TRPD+ +AV +SR + P +H AKR+ YLKGTT L + Y + L G+ D+DY GDL RKS +GY + L + + S S K T + F T A + R L +Q PT I+ DN SAI L R+ +KHI +R+H +R L+ +++++LEH + Q AD LTK LK + F +R+LL
Sbjct: 10 IDQPPGYVQRGKEQK--VYRLKKALYGLKQAPRAWYSRIESHFLKAGFTKCPYEHTLFVKHGKECEI--LIVCLYVDDLIFTGNNEDMFKEFKKSMLEEFEMTDLGKMHYFLGIEVKQTSN--GVFIGQKKYAEEILKRFHMEDCNSVQNPIVPGTKLNKDVGGREV----DSTHFKQIVGSLMYLTA-TRPDLMFAVSLISRYMESPTELHYQTAKRVLRYLKGTTDLGLFYKKETINKKEAGDELMGFSDSDYAGDLDDRKSTSGYVFM------LSSAAVSWSSKKQPVVTLSTTEAEFIAATSSACQAVWLRRLLEELCFKQDKPTVIFCDNSSAIKLSRNPVMHGRSKHIDVRFHFLRDLVKNEVIELEHCPSNMQVADILTKPLKLEAFVKMRKLL 394
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A151R8N8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R8N8_CAJCA) HSP 1 Score: 214 bits (546), Expect = 1.760e-62 Identity = 147/405 (36.30%), Postives = 208/405 (51.36%), Query Frame = 1
Query: 1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGD-SDNFHPVGQTLLEPTDHGI----YREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*---------RDLPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
+KQPEGF K GK+ VCQL++SLYGLKQSPR W+ F++ G S D CVY K+ ++ + LL+ YVDD+L+ N + ++ L +S FD ++LG A +LGMEI R + L LCQK Y ILHRFGM + TP + V QTL + + + Y +GSL+Y TRPD++YAV +SR +++P H A KR+ L+GT+ + + Y + T L GY DADY DL RKS TGY + T S KA ++S T A ++ + L S G +Q+ I+ D+ SAI L + + TKHI +RYH I I++ + ++ I TL AD TK + F +LL
Sbjct: 1 MKQPEGFVKLGKED--YVCQLQKSLYGLKQSPRQWYKRFDTFMISKGFNKSPYDCCVYHKKVEDGFMIYLLL--YVDDILIAAKNKSEIQNLKALLSGEFDMKNLGAAKKILGMEIYRDRSQKKLFLCQKDYIQKILHRFGMHNAKPLSTPMSVKEKLKNVAQTLSQTEQNNVLQVPYASAVGSLMYTMVCTRPDLAYAVSVVSRYLNQPQKEHWQAVKRIFRNLRGTSDIGLIYGAN----TNCCLAGYSDADYAADLDGRKSITGYAF---------TLKSYLVSWKATLQSSVALSTTEAEYMALTEAAKEGIWLKGLISDLGVKQEH-ALIFCDSLSAICLAKDQVHHERTKHIDVRYHFI---ISERRIKVQKIDTLHNPADMFTKFVPKSKFFHCLDLL 384
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 222 bits (566), Expect = 1.910e-62 Identity = 140/397 (35.26%), Postives = 207/397 (52.14%), Query Frame = 1
Query: 1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIKRGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*---------RDLPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIR 1164
+KQP G+EK G +G LVC+L++SLYGLKQS R WH + + GL PS DPC+Y+K + + L++ +YVDD+++ + + + +S F +DL ++LGM IK +R+ RT+ + Q Y +L++FGM SV TP + G+ + + Y +++GSLLY +TRPDI++AV L + + H AAKR+ YLKGT + +KY G+ T L GY DADY GD R+S +GYT++ + T KA+Q+ + +S R L G +Q PT I EDNQ+ I + + TKHI +RYH +R+ + V+L +I T Q AD LTK L IR
Sbjct: 321 IKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI--LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDNE---YMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGSFT--LVGYADADYAGDKDNRRSTSGYTFTLSHGDDVNTIDW-----KAKQQDVVALSSAESELISACSATQNAVYIRQLLMDLGFKQDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPLSSIRLAMIR 705
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT) HSP 1 Score: 226 bits (575), Expect = 5.910e-62 Identity = 137/400 (34.25%), Postives = 214/400 (53.50%), Query Frame = 1
Query: 1 VKQPEGFEKTGKDGSHLVCQLKRSLYGLKQSPRLWHATLHAFLLDAGLVPSEIDPCVYIK--RGKNSGLPDLLMSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDLRTLHLCQKKYADDILHRFGMDRFNSVPTPGDSDNFHPVGQTLLEPTDHGIYREIIGSLLYLCRLTRPDISYAVMQLSRVVSKPYAIHMAAAKRLPGYLKGTTTLCIKYLGSIRPPTTPVLEGYCDADYGGDLATRKSCTGYTYS*PKVP*LGTPSCSH*SHKAQQRTSTF**PTRAMKLST*-------RDLPSSPGAEQQSPTAIYEDNQSAIHLVRSEGWSSHTKHIAIRYHRIRQLITDDIVDLEHIGTLSQRADCLTKQLKGQHFRDIRELL 1173
+KQPEG+ ++ VC+L RS+YGLKQ+ R W++ + FL+ G S DPC+YIK + KN + +++++YVDD+L N ++ ++++ RF +D+G +Y+LGM +K +R+ RTL + Q KY + +L RFGM +V TP + P D Y+ IG L Y TRPD++ AV LS+ +++P H KR+ Y+KGT + + PVL GY DAD+GGD+ TR+S +GY + ++ CS K Q S + LST R L S G +Q P+ I+EDNQ AI L ++ + + TKHI + +H IR+ + +IV +++ T + AD +TK L F R+++
Sbjct: 941 MKQPEGY--VDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVLKRFGMQECKAVSTPLEPGRKFESLSENDTPIDVREYQMAIGCLTYATNATRPDLAAAVGILSKYMARPGKDHWQGVKRVLRYVKGTLHSGLTFTAH---GNNPVLYGYADADWGGDVETRRSTSGYVF---QIQNNTISWCS----KRQASVSRSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPSTIFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENMLADVMTKALPKVSFERFRDMM 1328 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig81.19855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig81.19855.1 >prot_S-ischiensis_contig81.19855.1 ID=prot_S-ischiensis_contig81.19855.1|Name=mRNA_S-ischiensis_contig81.19855.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=196bp MSIYVDDVLLTGANPNSVETLLKSMSARFDTQDLGTAAYLLGMEIKHSRDback to top mRNA from alignment at S-ischiensis_contig81:15609..16781+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig81.19855.1 ID=mRNA_S-ischiensis_contig81.19855.1|Name=mRNA_S-ischiensis_contig81.19855.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1173bp|location=Sequence derived from alignment at S-ischiensis_contig81:15609..16781+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig81:15609..16781+ >mRNA_S-ischiensis_contig81.19855.1 ID=mRNA_S-ischiensis_contig81.19855.1|Name=mRNA_S-ischiensis_contig81.19855.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1176bp|location=Sequence derived from alignment at S-ischiensis_contig81:15609..16781+ (Schizocladia ischiensis KU_0333)back to top |