mRNA_S-ischiensis_contig108.1926.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI) HSP 1 Score: 131 bits (329), Expect = 7.760e-31 Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 3
Query: 3 SVTVVDHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLDLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
S+ + + G R +++L E +YLTDMD+TR+LPEC +L+R F +D+LP G CA+Q + E R FMGPNLYITPPGS T+ HQDGNGTVDSGHQCL G
Sbjct: 241 SMRFMSYDGNNRTLELLREAVYLTDMDLTRYLPECANNLSREFKMDILPAGARCAMQHMPRESRTFMGPNLYITPPGSWTQCHQDGNGTVDSGHQCLAG 339
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S2SQY1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY1_9STRA) HSP 1 Score: 129 bits (323), Expect = 4.720e-30 Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 3
Query: 18 DHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLDLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
D G++ + VL+E LYL D D+ +HLPE FCDL RNF +DLLP G C + + + G PFMGPNLYITPPG+ T HQDG+GTVDSGHQCL+G
Sbjct: 620 DSAGKKVDVPVLDEGLYLIDFDLPKHLPELFCDLERNFKVDLLPRGRRCLFRHLPLRGHPFMGPNLYITPPGTFTHFHQDGHGTVDSGHQCLRG 713
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S2DKI0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKI0_9STRA) HSP 1 Score: 123 bits (309), Expect = 5.220e-30 Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query: 3 SVTVV-DHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLDLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
VT+V +HLG I VL E +Y+ D DV ++LPE DLTR+ LDLLP GE C L+ + + G PFMGPNLYITPPG+ T HQDG+GTVDSGH CL+G
Sbjct: 25 DVTIVRNHLGLPMAIPVLEEGIYMIDFDVPKYLPELQADLTRHLKLDLLPRGERCMLRHLPLNGHPFMGPNLYITPPGTFTHFHQDGHGTVDSGHLCLRG 124
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S3ZG35_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZG35_9EUKA) HSP 1 Score: 117 bits (293), Expect = 7.350e-27 Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 3
Query: 12 VVDHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLDLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
+ D +GR + +DV E++YL D+ + PE D+ + DLLPGGENC L+ VS GRP MGPNLYI+PPG+ T H+DG+GTVDSGH CLQG
Sbjct: 104 IYDCVGRPQEVDVNRELIYLLDLPAQSYTPELMVDMRKRMPFDLLPGGENCLLRYVSTNGRPQMGPNLYISPPGTYTWFHEDGHGTVDSGHLCLQG 199
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S1CQ01_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ01_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.160e-26 Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 3
Query: 6 VTVVDHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLDLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
+++ DH G +D L EVLYL D+ V LP DL N+ ++ LP G NC LQ + +GRPFMGPNLY+TPPGS T H+DG GT+DSGHQ + G
Sbjct: 6 MSISDHRGVAVPLDPLFEVLYLLDLSVPAKLPNLAADLAANYGIETLPAGSNCMLQALPEKGRPFMGPNLYVTPPGSFTWTHEDGRGTLDSGHQTITG 103
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: K0SGJ8_THAOC (C2H2-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGJ8_THAOC) HSP 1 Score: 113 bits (283), Expect = 1.070e-24 Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query: 3 SVTVVDHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLL-DLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
+ T VD + + V + LYL D+D+ + LP+ F DL NF+L +LPGG +C + ++V GRPFMGPNLYITPP S T HQDG+GTVDSGH CL G
Sbjct: 835 TFTFVDGNDETKTVKVDEDALYLLDVDMVKLLPQSFDDLKNNFMLPSILPGGSHCMMNALNVNGRPFMGPNLYITPPASFTHFHQDGHGTVDSGHLCLSG 934
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: B8CCF4_THAPS (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCF4_THAPS) HSP 1 Score: 112 bits (279), Expect = 3.300e-24 Identity = 52/95 (54.74%), Postives = 66/95 (69.47%), Query Frame = 3
Query: 18 DHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLD-LLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
D G E+ IDV VLY+ D+D+ + LP+ + D RNF L +LPGG +C + V+ GRPFMGPNLY+TPP S T HQDG+GTVDSGH C +G
Sbjct: 573 DSNGNEQAIDVSKVVLYMVDVDMIKLLPQTYEDFRRNFKLPGILPGGSHCMMNAVNEGGRPFMGPNLYVTPPSSFTHFHQDGHGTVDSGHHCREG 667
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S3Q867_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q867_9STRA) HSP 1 Score: 108 bits (270), Expect = 5.250e-23 Identity = 52/90 (57.78%), Postives = 61/90 (67.78%), Query Frame = 3
Query: 33 ERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLD-LLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
ER D + LYL DMD+ R LPE D +NF L LPGG+ C + V+ GRPFMGPNLY+TPPGS T HQDG+GTVDSGH C+ G
Sbjct: 489 ERTFDPRRDYLYLLDMDLKRTLPESHNDFLKNFRLPKCLPGGDFCMMNSVNDLGRPFMGPNLYVTPPGSFTHFHQDGHGTVDSGHMCIDG 578
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S1ZIK7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIK7_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.140e-21 Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 3
Query: 27 GRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLD-LLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
G + ++V++ VLY+ D D+ + LP + D F + LPGG +C + V+ GRPFMGPN+Y+TPPGS T HQDG+GTVDSGHQCL G
Sbjct: 677 GETKSVNVVDVVLYMIDYDMVKLLPPLYEDFINKFKMPGCLPGGIHCMMNSVNAGGRPFMGPNIYLTPPGSFTHFHQDGHGTVDSGHQCLSG 768
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S3L187_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L187_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.150e-21 Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 3
Query: 30 RERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLL-DLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
+E +DV N+V+Y+ D+D+T+ LP+ + D NF + ++LPGGE C + V GRPFMGPNLY+TP GS T +HQDG+GTVDSGH + G
Sbjct: 1085 QEIELDVENDVIYMLDLDMTKLLPQTYQDFVDNFKIKEMLPGGEWCMMNKVPQSGRPFMGPNLYMTPAGSFTHLHQDGHGTVDSGHYNVTG 1175 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig108.1926.1 >prot_S-ischiensis_contig108.1926.1 ID=prot_S-ischiensis_contig108.1926.1|Name=mRNA_S-ischiensis_contig108.1926.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=207bp MDVTRHLPECFCDLTRNFLLDLLPGGENCALQMVSVEGRPFMGPNLYITPback to top mRNA from alignment at S-ischiensis_contig108:171289..174855+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig108.1926.1 ID=mRNA_S-ischiensis_contig108.1926.1|Name=mRNA_S-ischiensis_contig108.1926.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3567bp|location=Sequence derived from alignment at S-ischiensis_contig108:171289..174855+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig108:171289..174855+ >mRNA_S-ischiensis_contig108.1926.1 ID=mRNA_S-ischiensis_contig108.1926.1|Name=mRNA_S-ischiensis_contig108.1926.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1242bp|location=Sequence derived from alignment at S-ischiensis_contig108:171289..174855+ (Schizocladia ischiensis KU_0333)back to top |