mRNA_S-ischiensis_contig108.1926.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig108.1926.1
Unique NamemRNA_S-ischiensis_contig108.1926.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 7.760e-31
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 3
Query:    3 SVTVVDHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLDLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
            S+  + + G  R +++L E +YLTDMD+TR+LPEC  +L+R F +D+LP G  CA+Q +  E R FMGPNLYITPPGS T+ HQDGNGTVDSGHQCL G
Sbjct:  241 SMRFMSYDGNNRTLELLREAVYLTDMDLTRYLPECANNLSREFKMDILPAGARCAMQHMPRESRTFMGPNLYITPPGSWTQCHQDGNGTVDSGHQCLAG 339          
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S2SQY1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY1_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.720e-30
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 3
Query:   18 DHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLDLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
            D  G++  + VL+E LYL D D+ +HLPE FCDL RNF +DLLP G  C  + + + G PFMGPNLYITPPG+ T  HQDG+GTVDSGHQCL+G
Sbjct:  620 DSAGKKVDVPVLDEGLYLIDFDLPKHLPELFCDLERNFKVDLLPRGRRCLFRHLPLRGHPFMGPNLYITPPGTFTHFHQDGHGTVDSGHQCLRG 713          
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S2DKI0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKI0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.220e-30
Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    3 SVTVV-DHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLDLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
             VT+V +HLG    I VL E +Y+ D DV ++LPE   DLTR+  LDLLP GE C L+ + + G PFMGPNLYITPPG+ T  HQDG+GTVDSGH CL+G
Sbjct:   25 DVTIVRNHLGLPMAIPVLEEGIYMIDFDVPKYLPELQADLTRHLKLDLLPRGERCMLRHLPLNGHPFMGPNLYITPPGTFTHFHQDGHGTVDSGHLCLRG 124          
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S3ZG35_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZG35_9EUKA)

HSP 1 Score: 117 bits (293), Expect = 7.350e-27
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 3
Query:   12 VVDHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLDLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
            + D +GR + +DV  E++YL D+    + PE   D+ +    DLLPGGENC L+ VS  GRP MGPNLYI+PPG+ T  H+DG+GTVDSGH CLQG
Sbjct:  104 IYDCVGRPQEVDVNRELIYLLDLPAQSYTPELMVDMRKRMPFDLLPGGENCLLRYVSTNGRPQMGPNLYISPPGTYTWFHEDGHGTVDSGHLCLQG 199          
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S1CQ01_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ01_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.160e-26
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 3
Query:    6 VTVVDHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLDLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
            +++ DH G    +D L EVLYL D+ V   LP    DL  N+ ++ LP G NC LQ +  +GRPFMGPNLY+TPPGS T  H+DG GT+DSGHQ + G
Sbjct:    6 MSISDHRGVAVPLDPLFEVLYLLDLSVPAKLPNLAADLAANYGIETLPAGSNCMLQALPEKGRPFMGPNLYVTPPGSFTWTHEDGRGTLDSGHQTITG 103          
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: K0SGJ8_THAOC (C2H2-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGJ8_THAOC)

HSP 1 Score: 113 bits (283), Expect = 1.070e-24
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:    3 SVTVVDHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLL-DLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
            + T VD     + + V  + LYL D+D+ + LP+ F DL  NF+L  +LPGG +C +  ++V GRPFMGPNLYITPP S T  HQDG+GTVDSGH CL G
Sbjct:  835 TFTFVDGNDETKTVKVDEDALYLLDVDMVKLLPQSFDDLKNNFMLPSILPGGSHCMMNALNVNGRPFMGPNLYITPPASFTHFHQDGHGTVDSGHLCLSG 934          
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: B8CCF4_THAPS (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCF4_THAPS)

HSP 1 Score: 112 bits (279), Expect = 3.300e-24
Identity = 52/95 (54.74%), Postives = 66/95 (69.47%), Query Frame = 3
Query:   18 DHLGRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLD-LLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
            D  G E+ IDV   VLY+ D+D+ + LP+ + D  RNF L  +LPGG +C +  V+  GRPFMGPNLY+TPP S T  HQDG+GTVDSGH C +G
Sbjct:  573 DSNGNEQAIDVSKVVLYMVDVDMIKLLPQTYEDFRRNFKLPGILPGGSHCMMNAVNEGGRPFMGPNLYVTPPSSFTHFHQDGHGTVDSGHHCREG 667          
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S3Q867_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q867_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.250e-23
Identity = 52/90 (57.78%), Postives = 61/90 (67.78%), Query Frame = 3
Query:   33 ERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLD-LLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
            ER  D   + LYL DMD+ R LPE   D  +NF L   LPGG+ C +  V+  GRPFMGPNLY+TPPGS T  HQDG+GTVDSGH C+ G
Sbjct:  489 ERTFDPRRDYLYLLDMDLKRTLPESHNDFLKNFRLPKCLPGGDFCMMNSVNDLGRPFMGPNLYVTPPGSFTHFHQDGHGTVDSGHMCIDG 578          
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S1ZIK7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIK7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.140e-21
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 3
Query:   27 GRERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLLD-LLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
            G  + ++V++ VLY+ D D+ + LP  + D    F +   LPGG +C +  V+  GRPFMGPN+Y+TPPGS T  HQDG+GTVDSGHQCL G
Sbjct:  677 GETKSVNVVDVVLYMIDYDMVKLLPPLYEDFINKFKMPGCLPGGIHCMMNSVNAGGRPFMGPNIYLTPPGSFTHFHQDGHGTVDSGHQCLSG 768          
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Match: A0A7S3L187_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L187_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.150e-21
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 3
Query:   30 RERRIDVLNEVLYLTDMDVTRHLPECFCDLTRNFLL-DLLPGGENCALQMVSVEGRPFMGPNLYITPPGSVTKMHQDGNGTVDSGHQCLQG 299
            +E  +DV N+V+Y+ D+D+T+ LP+ + D   NF + ++LPGGE C +  V   GRPFMGPNLY+TP GS T +HQDG+GTVDSGH  + G
Sbjct: 1085 QEIELDVENDVIYMLDLDMTKLLPQTYQDFVDNFKIKEMLPGGEWCMMNKVPQSGRPFMGPNLYMTPAGSFTHLHQDGHGTVDSGHYNVTG 1175          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig108.1926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LCL4_ECTSI7.760e-3159.60ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A7S2SQY1_9STRA4.720e-3060.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2DKI0_9STRA5.220e-3059.00Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A7S3ZG35_9EUKA7.350e-2754.17Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S1CQ01_9STRA1.160e-2652.04Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
K0SGJ8_THAOC1.070e-2453.00C2H2-type domain-containing protein n=1 Tax=Thalas... [more]
B8CCF4_THAPS3.300e-2454.74RanBP2-type domain-containing protein (Fragment) n... [more]
A0A7S3Q867_9STRA5.250e-2357.78Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1ZIK7_9STRA1.140e-2151.09Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3L187_9STRA1.150e-2152.75Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig108contigS-ischiensis_contig108:171289..174855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue8.4e-23
Seed eggNOG ortholog2880.D8LCL4
KEGG koko:K15255
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons4
Model size802
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig108.1926.1prot_S-ischiensis_contig108.1926.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig108 171366..174751 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.1037421-UTR-S-ischiensis_contig108:171288..1713651622815572.1037421-UTR-S-ischiensis_contig108:171288..171365Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 171289..171365 +
1695739777.869465-UTR-S-ischiensis_contig108:171288..1713651695739777.869465-UTR-S-ischiensis_contig108:171288..171365Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 171289..171365 +
1622815572.181984-UTR-S-ischiensis_contig108:174751..1748551622815572.181984-UTR-S-ischiensis_contig108:174751..174855Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 174752..174855 +
1695739777.9288785-UTR-S-ischiensis_contig108:174751..1748551695739777.9288785-UTR-S-ischiensis_contig108:174751..174855Schizocladia ischiensis KU_0333UTRS-ischiensis_contig108 174752..174855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.118617-CDS-S-ischiensis_contig108:171365..1713791622815572.118617-CDS-S-ischiensis_contig108:171365..171379Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 171366..171379 +
1695739777.8836966-CDS-S-ischiensis_contig108:171365..1713791695739777.8836966-CDS-S-ischiensis_contig108:171365..171379Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 171366..171379 +
1622815572.1382277-CDS-S-ischiensis_contig108:172131..1722751622815572.1382277-CDS-S-ischiensis_contig108:172131..172275Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 172132..172275 +
1695739777.8955095-CDS-S-ischiensis_contig108:172131..1722751695739777.8955095-CDS-S-ischiensis_contig108:172131..172275Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 172132..172275 +
1622815572.1512418-CDS-S-ischiensis_contig108:173894..1739551622815572.1512418-CDS-S-ischiensis_contig108:173894..173955Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 173895..173955 +
1695739777.9067175-CDS-S-ischiensis_contig108:173894..1739551695739777.9067175-CDS-S-ischiensis_contig108:173894..173955Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 173895..173955 +
1622815572.1640947-CDS-S-ischiensis_contig108:174349..1747511622815572.1640947-CDS-S-ischiensis_contig108:174349..174751Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 174350..174751 +
1695739777.9195485-CDS-S-ischiensis_contig108:174349..1747511695739777.9195485-CDS-S-ischiensis_contig108:174349..174751Schizocladia ischiensis KU_0333CDSS-ischiensis_contig108 174350..174751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig108.1926.1

>prot_S-ischiensis_contig108.1926.1 ID=prot_S-ischiensis_contig108.1926.1|Name=mRNA_S-ischiensis_contig108.1926.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=207bp
MDVTRHLPECFCDLTRNFLLDLLPGGENCALQMVSVEGRPFMGPNLYITP
PGSVTKMHQDGNGTVDSGHQCLQGPQPRYHAEAPGRGEQAPRHRHSQCCC
QEEHATGTLATAAAAAAAANPPRPRPNSGGATSTAPRVPSAAAATAATRR
TTVIVIRGRRCLHLRRRRRPHYHPCCRHLGWWCGRSGWGCPCRGCGRARQ
LRWGPQ*
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mRNA from alignment at S-ischiensis_contig108:171289..174855+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig108.1926.1 ID=mRNA_S-ischiensis_contig108.1926.1|Name=mRNA_S-ischiensis_contig108.1926.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3567bp|location=Sequence derived from alignment at S-ischiensis_contig108:171289..174855+ (Schizocladia ischiensis KU_0333)
CTTCGGTGACGGTGGTGGATCACCTTGGGAGGGAGAGGAGGATTGATGTG CTGAACGAGGTGCTGTATCTCACGGACATGGATGTTACGAGGTGTGTGTG TGTGTGTGTGATGTGATGTGCACACAAAAGCGCTGTAGTTTGACATCACA TCGCATCGGAAAAGAGCATCGGTGTGTGTGTGTGTGTGTGAGCGTGCGTG TGTTCGAGTGCAAGCGTGTGTGTGAGTGTGCGTATGCCTGTACGAGTGCC TGTGCGTGAGGGTCTGCCACTGCCGACCCCGCCACTGTTGCCGACTTGCC GATATCTACGGCAGCGCAACCATATTTACCCCAACTACCTTCTTACGTGT AAGGATGTACTTCGAAGTACTGCAACCCTGCCGGTCGGTCGGTCGGGCGC ACGCCCGCACGCATGCACGCACACAGGCACCTCCCCGAGTGCTTCCGCGA GCTGACACGCAACTTGCTTTTAACGCGCGCACGCATTCATGCGCGCAGGC AGGCACGCACGCACGCACACACACACACACACCGCTGATTTGTTGTCATG GGATGTGATGTCAAACTACAGTCTTTTTGTGTGCGTTATCACATCACACA CACGTGTGCACGCACGCGCTCAGGCACCTCCCCGAGTGCTTCTGCGGCCT GACACGCAACATTCTGTTAACGGCACGCGCGCACGCACGCACGCACGCAT GCAGGCACGCACGCAGGCACCTCCCCGATCTCTTCCGAGACCTTGCACGC GACTTTCATTTAGCCCACGCATGCACGCATGCACGCACGCACGCCGCACG CACGAACGCATGCATGCACGCATGCATGCATGCACGCAAGCAGGCACCTC CCCGAGTGCTTCTGCGACCTGACGCGCAACTTCCTGCTGGACCTGCTGCC TGGCGGGGAGAACTGCGCCCTGCAGATGGTCAGCGTGGAGGGACGGCCCT TCATGGGACCCAATCTGTACATCACGCCTCCCGGCAGGTGAGTTACAACA GGGTTGGCACTTAGGGCTTAATTAGGGCCTAACTAGCCTTCAGTTTAGGT CTAATTACCTCTAGTTAAGGGCCGAAGGGGCCACCACTGGCCGGCCCTTC ATGAGACCCAACCTGCACATCACACCTCCCGGCAGGTGAGGCAATGACCG CTAATTAGGCCCAGTGAAAGTTTAATTGCGCCCAATTGCCTCTATCTAAG GGCCTAAAAGGGCACCACTTAGGGGTTACATCACGCCGCCCGGCAGGTGA GTTAGAACAGGGTTGGCACTTAGGGGTTAGTTAGGGCGTAATTGGCCTTC ATTTTAGGTACGCTTACCCCTAGTTAACTCCAGTTAAGGGCCCAAAAGGC ACGACTTAAGGGTTACATCACGCCGCCCGGCAGGTGAGTTAGAACAGGGT TGGCATCAAGGGGTTAATTAGGGCCTAACTAGCCTTCATTTTAAGTCTAA TTACCCCTAATTACCTCTAGCAAGGGCCTAAAAGGGCCACCACTGGCCGG CCCTTCATGAGACCCAACCTGCACATCACGACTCCCGGCAGATGCGCCAA TGAAGGCTAACTAAGCCCCGTAAACGTCTAATGGCGCCTAGTTGCCTCTA ATCCAGGGCCTAAAAGGGCACCACGTAGGGGTTACAGCACGCCGCCCGGC AGGTGAGTTAGAAAAGAGTTGGCACTTAGGGGTTAATTAGGGCCTAGTTG GCCTTCATTTTATGTATAATTACCCCTAATTACCTCTAATGAAGGGCCCA AAAGGCAACACTTAGGGGTTACATCATGCCGCCCGGCAGGTGAGTTAGAA CAGGGTTGGCACCAAGGGGATAACTAGGGCCTAATTAGCCTTCATTTTAG GTCTAATTACCCCTAATTACCTCCAGTAAGGGTCTAAAAGGGCCACCACT GGCCGGCCCTCCATGGGACCCAACCTGTACACCACGCCGCCCAGCAGGTG AGCTAGGACAGAGTTGGCACTTAAGAGGTTGATTAGGGTCTAGTTGGCCT TCATGTTAGGTCAAATTACCCCTAATTATATCTAATTAATGTCCTAAAAG GGCACCACTTAGGGGTTAAGGGCCAACCCTGGCTCATCTGCTCGCGTTTT TACCAAGACAGTGCTCTGCTTTCTTGTGCTATACTCGAGTCTATGTACGT ACTTCCATGTACATAGTACTGTGCTGCGCATTTCCTGGCCTTCATAGGGC CATCCCATGTCGTCGCCCTCCCCAGGGAGGCAATATGGGGACTGGGCAAG CACAGTGTGAGTGCTCACGTGTGAATGATGAGTTGGGTGTGCCTTCCCCA GCAATGGAATATCTAAGCAAATCAGCATATTTGTCGACAGTACTGATCTA CTACTATATCTATCGATAGCCGATATTCGATGGTTTGACCCACACTAAAT CCAAGTATTTTTTTGGCACGAAGGGAGCAACGCCACCCGCAAAATCAGTC GAGCCCGACAACTATCTACCAATCGATGTTCCCATCACTGTAGGGTCACC CCTGTGATGTTGATGTGATGTGATGTCATGTCAAACTACAGTAAGTTACA GCGCACATCACATCACATCATATTATTGCTGATCGATATTCCACCCCTGC CTGCAGCGTGACCAAGATGCACCAGGATGGGAACGGCACCGTCGACTCGG GGCACCAGTGTCTGCAGGTGTGTGGGTTGCGCGCATGCGTGCATGCATGT GTGTGTGTTGGTGTGTATACTCGAGTGCGGTTCTGTGTGTGATCTCTCTC TTTCTGTCTCTCTCTCTCTCTGTCTCTCTGTCTCTCTTTCTCTCTCTCTC TCTCTCTCCCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCCCCCCCCACACCTCCCTCCCCCCCCTCCCCTCCCCCCCGGCCCCCA CTCTCTCTCCCTCCGCCACCTCCACAACCGCAACCACCCCACCACCACCA CCACAACAACAATCACCCAGACACCAATTTCTCACCCACACAACCACAAC CCATCTCCTTGCCCCCCCCCCCCACCCCCACACCCGCCACGCGCCGCGCC CCCGGCAGCAGGGGCCGCAACCGCGTTATCATGCTGAGGCGCCTGGACGA GGCGAACAAGCGCCGCGCCACCGACATTCTCAGTGCTGCTGCCAAGAGGA ACACGCCACCGGCACCCTGGCAACAGCAGCAGCAGCAGCAGCAGCAGCTA ACCCCCCCCGGCCGCGCCCCAACTCCGGCGGGGCAACAAGCACCGCCCCC CGTGTCCCTTCCGCCGCCGCCGCCACCGCCGCCACTCGCAGGACTACCGT CATCGTCATCCGAGGCCGCCGCTGCCTCCACCTCCGCCGCCGCCGCCGCC CCCACTACCACCCCTGCTGCCGCCACCTTGGGTGGTGGTGTGGCCGGTCG GGGTGGGGGTGCCCCTGCAGGGGATGTGGGCGGGCACGACAGTTACGGTG GGGCCCGCAGTGACCGCCGGTTTCGTTCCCGGCGGAGGTGTGCTCTGTAT AAAGGGTTGCCTGTGGGTGTTGGGGGCGAGGAGGCGGTTAGCCGAGGAGG CGATGCTGGAATCCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig108:171289..174855+

>mRNA_S-ischiensis_contig108.1926.1 ID=mRNA_S-ischiensis_contig108.1926.1|Name=mRNA_S-ischiensis_contig108.1926.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1242bp|location=Sequence derived from alignment at S-ischiensis_contig108:171289..174855+ (Schizocladia ischiensis KU_0333)
ATGGATGTTACGAGATGGATGTTACGAGGCACCTCCCCGAGTGCTTCTGC
GACCTGACGCGCAACTTCCTGCTGGACCTGCTGCCTGGCGGGGAGAACTG
CGCCCTGCAGATGGTCAGCGTGGAGGGACGGCCCTTCATGGGACCCAATC
TGTACATCACGCCTCCCGGCAGGCACCTCCCCGAGTGCTTCTGCGACCTG
ACGCGCAACTTCCTGCTGGACCTGCTGCCTGGCGGGGAGAACTGCGCCCT
GCAGATGGTCAGCGTGGAGGGACGGCCCTTCATGGGACCCAATCTGTACA
TCACGCCTCCCGGCAGCGTGACCAAGATGCACCAGGATGGGAACGGCACC
GTCGACTCGGGGCACCAGTGTCTGCAGCGTGACCAAGATGCACCAGGATG
GGAACGGCACCGTCGACTCGGGGCACCAGTGTCTGCAGGGGCCGCAACCG
CGTTATCATGCTGAGGCGCCTGGACGAGGCGAACAAGCGCCGCGCCACCG
ACATTCTCAGTGCTGCTGCCAAGAGGAACACGCCACCGGCACCCTGGCAA
CAGCAGCAGCAGCAGCAGCAGCAGCTAACCCCCCCCGGCCGCGCCCCAAC
TCCGGCGGGGCAACAAGCACCGCCCCCCGTGTCCCTTCCGCCGCCGCCGC
CACCGCCGCCACTCGCAGGACTACCGTCATCGTCATCCGAGGCCGCCGCT
GCCTCCACCTCCGCCGCCGCCGCCGCCCCCACTACCACCCCTGCTGCCGC
CACCTTGGGTGGTGGTGTGGCCGGTCGGGGTGGGGGTGCCCCTGCAGGGG
ATGTGGGCGGGCACGACAGTTACGGTGGGGCCCGCAGTGAGGGCCGCAAC
CGCGTTATCATGCTGAGGCGCCTGGACGAGGCGAACAAGCGCCGCGCCAC
CGACATTCTCAGTGCTGCTGCCAAGAGGAACACGCCACCGGCACCCTGGC
AACAGCAGCAGCAGCAGCAGCAGCAGCTAACCCCCCCCGGCCGCGCCCCA
ACTCCGGCGGGGCAACAAGCACCGCCCCCCGTGTCCCTTCCGCCGCCGCC
GCCACCGCCGCCACTCGCAGGACTACCGTCATCGTCATCCGAGGCCGCCG
CTGCCTCCACCTCCGCCGCCGCCGCCGCCCCCACTACCACCCCTGCTGCC
GCCACCTTGGGTGGTGGTGTGGCCGGTCGGGGTGGGGGTGCCCCTGCAGG
GGATGTGGGCGGGCACGACAGTTACGGTGGGGCCCGCAGTGA
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