mRNA_S-dermatodea_contig13183.1900.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 370 bits (949), Expect = 5.130e-121 Identity = 187/219 (85.39%), Postives = 201/219 (91.78%), Query Frame = 1
Query: 46 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
MV+TQ+FLG+AA+LIASS AFVAPMAVRSAAPA SSS SAGS YV TLPGAPFGDGKIFDPL+LSDGA P DIKKWREAEIKHGRVAMLASLGVLVAE+YHP FMGPDY+GPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKE+Y PGDLGFDPL +KP+D A L M+TKELNNGRLAMIGIAGMLVQEL+NPADIL
Sbjct: 1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 357 bits (916), Expect = 5.180e-116 Identity = 183/219 (83.56%), Postives = 196/219 (89.50%), Query Frame = 1
Query: 46 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
MV++QMFLGTAA+LIASS AFVAP+AVRSAAPA ++S SAGS YV TLPGAPF DGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLG+LVAEEYHP FMG D++GPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP A L M+TKELNNGRLAMIGIAGML QELVN DIL
Sbjct: 1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 357 bits (915), Expect = 6.580e-116 Identity = 180/219 (82.19%), Postives = 195/219 (89.04%), Query Frame = 1
Query: 46 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
+ S+ MFLGTAA+LIASS AFVAPMAVRSAAPA S+S SAGS YV TLPGAPFGDGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHP FMGPDY+GPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTI A+ PS VTGEGGL++ Y+PGDLGFDPL +KPKD AGL MQTKELNNGRLAMIGIAGMLVQELVNPADIL
Sbjct: 2 VASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 319 bits (818), Expect = 1.800e-101 Identity = 164/217 (75.58%), Postives = 185/217 (85.25%), Query Frame = 1
Query: 52 STQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
S+ MFLGTAA+LIASS AFV PMAVRSAAPA S+S SAG+ Y+ TLPGA +GKIFD L L+DGA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDY+GPAVDHFQEI+A+FP+FWA+SLLGMAFIEYNTI A+ PS VTGEGGL++ Y+PGDLGFDP IKPKD AGL MQ KELNNGRLAMIGI GMLVQELVN DIL
Sbjct: 4 SSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 298 bits (764), Expect = 8.930e-94 Identity = 143/160 (89.38%), Postives = 151/160 (94.38%), Query Frame = 1
Query: 223 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
+IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDY+GPAVDHFQEISAQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct: 36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 299 bits (766), Expect = 2.960e-91 Identity = 144/160 (90.00%), Postives = 151/160 (94.38%), Query Frame = 1
Query: 223 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
+IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDY+GPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct: 232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 291 bits (744), Expect = 7.200e-91 Identity = 160/219 (73.06%), Postives = 168/219 (76.71%), Query Frame = 1
Query: 46 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
MV++QMF+GTAA+LIASS AFVAPMAVRS SS SAGS YV TLPGAPF DGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLGV+VAE FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 271 bits (692), Expect = 2.180e-83 Identity = 131/164 (79.88%), Postives = 142/164 (86.59%), Query Frame = 1
Query: 223 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADILAFLN 714
KIFDPL L+DGA GDIK WREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDY+GPAVDHFQEISA+FPEFWAFSLL +A IEYNTI A+ PS VTGEGGL++ Y+PGDLGFDPL +KP D L MQTKELNNGRLAMIGIAG LVQELVNP +IL FL+
Sbjct: 15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFLH 178
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 254 bits (648), Expect = 1.430e-75 Identity = 130/218 (59.63%), Postives = 162/218 (74.31%), Query Frame = 1
Query: 46 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADI 699
+ ST +G A+ AS AF+ P +A S++ +M SAGS YV TLPGAPF DGK++DP+ LS A P DIKKWREAEIKHGRVAMLAS+GVLVAE +HP F+GPDY+GPA+ HF+EI+A+FP+FWA +LL +A++EY I F VTGEGG++ +Y PGDLGFDPLG+ P+D L M+TKELN+GRLAMIGI GM+VQELV P I
Sbjct: 53 VTSTGALVGMASWCFASCEAFIVPTPTTLSARPTSTAARM-SAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPI 269
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI) HSP 1 Score: 235 bits (600), Expect = 4.000e-69 Identity = 127/224 (56.70%), Postives = 162/224 (72.32%), Query Frame = 1
Query: 46 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPAR--SSSLKMQSAGSAYVETLPGAPFG---DGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
MV++Q+FLGTAA+LIASS AFVAP+A ++ AR +SS +AGS Y +LPGAPFG +GK FDP L+ P IKKWREAE+KHGRV+MLA++G+LV+E +HP FMGP Y+GPAV+H Q+I+ +P FW SL +AFIE TI A+ T S VTG G LK Y PGDLGFDPLG+ PKD +Q++EL+ GR AMIG+ GM+VQE+V+ IL
Sbjct: 1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig13183.1900.1 >prot_S-dermatodea_contig13183.1900.1 ID=prot_S-dermatodea_contig13183.1900.1|Name=mRNA_S-dermatodea_contig13183.1900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=224bp MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETback to top mRNA from alignment at S-dermatodea_contig13183:401..4269+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig13183.1900.1 ID=mRNA_S-dermatodea_contig13183.1900.1|Name=mRNA_S-dermatodea_contig13183.1900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3869bp|location=Sequence derived from alignment at S-dermatodea_contig13183:401..4269+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig13183:401..4269+ >mRNA_S-dermatodea_contig13183.1900.1 ID=mRNA_S-dermatodea_contig13183.1900.1|Name=mRNA_S-dermatodea_contig13183.1900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at S-dermatodea_contig13183:401..4269+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |