prot_S-dermatodea_contig13183.1900.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig13183.1900.1
Unique Name	prot_S-dermatodea_contig13183.1900.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	224

Homology

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BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 1.030e-127
Identity = 187/219 (85.39%), Postives = 201/219 (91.78%), Query Frame = 0

Query:    1 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            MV+TQ+FLG+AA+LIASS AFVAPMAVRSAAPA SSS    SAGS YV TLPGAPFGDGKIFDPL+LSDGA P DIKKWREAEIKHGRVAMLASLGVLVAE+YHP FMGPDY+GPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKE+Y PGDLGFDPL +KP+D A L  M+TKELNNGRLAMIGIAGMLVQEL+NPADIL
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219

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BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 1.130e-122
Identity = 180/217 (82.95%), Postives = 194/217 (89.40%), Query Frame = 0

Query:    3 STQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            S+ MFLGTAA+LIASS AFVAPMAVRSAAPA S+S    SAGS YV TLPGAPFGDGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHP FMGPDY+GPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL++ Y+PGDLGFDPL +KPKD AGL  MQTKELNNGRLAMIGIAGMLVQELVNPADIL
Sbjct:    4 SSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220

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BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 1.260e-122
Identity = 183/219 (83.56%), Postives = 196/219 (89.50%), Query Frame = 0

Query:    1 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            MV++QMFLGTAA+LIASS AFVAP+AVRSAAPA ++S    SAGS YV TLPGAPF DGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLG+LVAEEYHP FMG D++GPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP   A L  M+TKELNNGRLAMIGIAGML QELVN  DIL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

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BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 4.240e-108
Identity = 164/217 (75.58%), Postives = 185/217 (85.25%), Query Frame = 0

Query:    3 STQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            S+ MFLGTAA+LIASS AFV PMAVRSAAPA S+S    SAG+ Y+ TLPGA   +GKIFD L L+DGA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDY+GPAVDHFQEI+A+FP+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL++ Y+PGDLGFDP  IKPKD AGL  MQ KELNNGRLAMIGI GMLVQELVN  DIL
Sbjct:    4 SSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217

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BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 2.310e-100
Identity = 143/160 (89.38%), Postives = 151/160 (94.38%), Query Frame = 0

Query:   60 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            +IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDY+GPAVDHFQEISAQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L  M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195

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BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 7.510e-98
Identity = 144/160 (90.00%), Postives = 151/160 (94.38%), Query Frame = 0

Query:   60 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            +IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDY+GPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L  M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391

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BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 6.380e-97
Identity = 160/219 (73.06%), Postives = 168/219 (76.71%), Query Frame = 0

Query:    1 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            MV++QMF+GTAA+LIASS AFVAPMAVRS     SS     SAGS YV TLPGAPF DGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLGV+VAE                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L  M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191

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BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 7.960e-90
Identity = 131/164 (79.88%), Postives = 142/164 (86.59%), Query Frame = 0

Query:   60 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADILAFLN 223
            KIFDPL L+DGA  GDIK WREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDY+GPAVDHFQEISA+FPEFWAFSLL +A IEYNTI  A+  PS VTGEGGL++ Y+PGDLGFDPL +KP D   L  MQTKELNNGRLAMIGIAG LVQELVNP +IL FL+
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFLH 178

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BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 2.450e-81
Identity = 130/216 (60.19%), Postives = 161/216 (74.54%), Query Frame = 0

Query:    3 STQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADI 218
            ST   +G A+   AS  AF+ P     +A   S++ +M SAGS YV TLPGAPF DGK++DP+ LS  A P DIKKWREAEIKHGRVAMLAS+GVLVAE +HP F+GPDY+GPA+ HF+EI+A+FP+FWA +LL +A++EY  I   F     VTGEGG++ +Y PGDLGFDPLG+ P+D   L  M+TKELN+GRLAMIGI GM+VQELV P  I
Sbjct:   55 STGALVGMASWCFASCEAFIVPTPTTLSARPTSTAARM-SAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPI 269

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BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 1.810e-74
Identity = 127/224 (56.70%), Postives = 162/224 (72.32%), Query Frame = 0

Query:    1 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPAR--SSSLKMQSAGSAYVETLPGAPFG---DGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            MV++Q+FLGTAA+LIASS AFVAP+A   ++ AR  +SS    +AGS Y  +LPGAPFG   +GK FDP  L+    P  IKKWREAE+KHGRV+MLA++G+LV+E +HP FMGP Y+GPAV+H Q+I+  +P FW  SL  +AFIE  TI  A+ T S VTG G LK  Y PGDLGFDPLG+ PKD      +Q++EL+ GR AMIG+ GM+VQE+V+   IL
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7Q6_ECTSI	1.030e-127	85.39	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	1.130e-122	82.95	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	1.260e-122	83.56	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	4.240e-108	75.58	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	2.310e-100	89.38	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	7.510e-98	90.00	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5K8D0_9PHAE	6.380e-97	73.06	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D7G7Q7_ECTSI	7.960e-90	79.88	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G5B4_ECTSI	2.450e-81	60.19	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7FQG7_ECTSI	1.810e-74	56.70	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 50..211 e-value: 3.0E-37 score: 128.6
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 36..223 e-value: 1.3E-36 score: 128.1
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 9..214
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 9..214
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..35
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..17
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 36..223
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..35
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..20 score: 0.572
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 58..222

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig13183	contig	S-dermatodea_contig13183:446..2816 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig13183.1900.1	mRNA_S-dermatodea_contig13183.1900.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig13183 401..4269 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig13183.1900.1 ID=prot_S-dermatodea_contig13183.1900.1|Name=mRNA_S-dermatodea_contig13183.1900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=224bp
MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVET
LPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVA
EEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAF
DTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLA
MIGIAGMLVQELVNPADILAFLN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln