mRNA_S-dermatodea_contig13183.1900.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13183.1900.1
Unique NamemRNA_S-dermatodea_contig13183.1900.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 5.130e-121
Identity = 187/219 (85.39%), Postives = 201/219 (91.78%), Query Frame = 1
Query:   46 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
            MV+TQ+FLG+AA+LIASS AFVAPMAVRSAAPA SSS    SAGS YV TLPGAPFGDGKIFDPL+LSDGA P DIKKWREAEIKHGRVAMLASLGVLVAE+YHP FMGPDY+GPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKE+Y PGDLGFDPL +KP+D A L  M+TKELNNGRLAMIGIAGMLVQEL+NPADIL
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219          
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 5.180e-116
Identity = 183/219 (83.56%), Postives = 196/219 (89.50%), Query Frame = 1
Query:   46 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
            MV++QMFLGTAA+LIASS AFVAP+AVRSAAPA ++S    SAGS YV TLPGAPF DGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLG+LVAEEYHP FMG D++GPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP   A L  M+TKELNNGRLAMIGIAGML QELVN  DIL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219          
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 357 bits (915), Expect = 6.580e-116
Identity = 180/219 (82.19%), Postives = 195/219 (89.04%), Query Frame = 1
Query:   46 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
            + S+ MFLGTAA+LIASS AFVAPMAVRSAAPA S+S    SAGS YV TLPGAPFGDGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHP FMGPDY+GPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL++ Y+PGDLGFDPL +KPKD AGL  MQTKELNNGRLAMIGIAGMLVQELVNPADIL
Sbjct:    2 VASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220          
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 1.800e-101
Identity = 164/217 (75.58%), Postives = 185/217 (85.25%), Query Frame = 1
Query:   52 STQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
            S+ MFLGTAA+LIASS AFV PMAVRSAAPA S+S    SAG+ Y+ TLPGA   +GKIFD L L+DGA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDY+GPAVDHFQEI+A+FP+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL++ Y+PGDLGFDP  IKPKD AGL  MQ KELNNGRLAMIGI GMLVQELVN  DIL
Sbjct:    4 SSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217          
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 8.930e-94
Identity = 143/160 (89.38%), Postives = 151/160 (94.38%), Query Frame = 1
Query:  223 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
            +IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDY+GPAVDHFQEISAQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L  M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195          
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 2.960e-91
Identity = 144/160 (90.00%), Postives = 151/160 (94.38%), Query Frame = 1
Query:  223 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
            +IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDY+GPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L  M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391          
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 7.200e-91
Identity = 160/219 (73.06%), Postives = 168/219 (76.71%), Query Frame = 1
Query:   46 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
            MV++QMF+GTAA+LIASS AFVAPMAVRS     SS     SAGS YV TLPGAPF DGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLGV+VAE                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L  M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191          
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 2.180e-83
Identity = 131/164 (79.88%), Postives = 142/164 (86.59%), Query Frame = 1
Query:  223 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADILAFLN 714
            KIFDPL L+DGA  GDIK WREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDY+GPAVDHFQEISA+FPEFWAFSLL +A IEYNTI  A+  PS VTGEGGL++ Y+PGDLGFDPL +KP D   L  MQTKELNNGRLAMIGIAG LVQELVNP +IL FL+
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFLH 178          
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 1.430e-75
Identity = 130/218 (59.63%), Postives = 162/218 (74.31%), Query Frame = 1
Query:   46 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADI 699
            + ST   +G A+   AS  AF+ P     +A   S++ +M SAGS YV TLPGAPF DGK++DP+ LS  A P DIKKWREAEIKHGRVAMLAS+GVLVAE +HP F+GPDY+GPA+ HF+EI+A+FP+FWA +LL +A++EY  I   F     VTGEGG++ +Y PGDLGFDPLG+ P+D   L  M+TKELN+GRLAMIGI GM+VQELV P  I
Sbjct:   53 VTSTGALVGMASWCFASCEAFIVPTPTTLSARPTSTAARM-SAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPI 269          
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 4.000e-69
Identity = 127/224 (56.70%), Postives = 162/224 (72.32%), Query Frame = 1
Query:   46 MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPAR--SSSLKMQSAGSAYVETLPGAPFG---DGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 702
            MV++Q+FLGTAA+LIASS AFVAP+A   ++ AR  +SS    +AGS Y  +LPGAPFG   +GK FDP  L+    P  IKKWREAE+KHGRV+MLA++G+LV+E +HP FMGP Y+GPAV+H Q+I+  +P FW  SL  +AFIE  TI  A+ T S VTG G LK  Y PGDLGFDPLG+ PKD      +Q++EL+ GR AMIG+ GM+VQE+V+   IL
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13183.1900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI5.130e-12185.39Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI5.180e-11683.56Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI6.580e-11682.19Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI1.800e-10175.58Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S5_ECTSI8.930e-9489.38Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE2.960e-9190.00LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5K8D0_9PHAE7.200e-9173.06LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G7Q7_ECTSI2.180e-8379.88Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI1.430e-7559.63Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7FQG7_ECTSI4.000e-6956.70Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13183contigS-dermatodea_contig13183:401..4269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score375.2
Seed ortholog evalue2.2e-101
Seed eggNOG ortholog2880.D7G7S3
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorychloroplast
Exons4
Model size2170
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13183.1900.1prot_S-dermatodea_contig13183.1900.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13183 446..2816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924276.409939-UTR-S-dermatodea_contig13183:400..4451622924276.409939-UTR-S-dermatodea_contig13183:400..445Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13183 401..445 +
1694079144.1443293-UTR-S-dermatodea_contig13183:400..4451694079144.1443293-UTR-S-dermatodea_contig13183:400..445Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13183 401..445 +
1622924276.4688807-UTR-S-dermatodea_contig13183:2816..42691622924276.4688807-UTR-S-dermatodea_contig13183:2816..4269Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13183 2817..4269 +
1694079144.2015204-UTR-S-dermatodea_contig13183:2816..42691694079144.2015204-UTR-S-dermatodea_contig13183:2816..4269Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13183 2817..4269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924276.4238126-CDS-S-dermatodea_contig13183:445..6251622924276.4238126-CDS-S-dermatodea_contig13183:445..625Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13183 446..625 +
1694079144.1539829-CDS-S-dermatodea_contig13183:445..6251694079144.1539829-CDS-S-dermatodea_contig13183:445..625Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13183 446..625 +
1622924276.4347754-CDS-S-dermatodea_contig13183:1046..11691622924276.4347754-CDS-S-dermatodea_contig13183:1046..1169Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13183 1047..1169 +
1694079144.1617858-CDS-S-dermatodea_contig13183:1046..11691694079144.1617858-CDS-S-dermatodea_contig13183:1046..1169Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13183 1047..1169 +
1622924276.4454722-CDS-S-dermatodea_contig13183:2015..20991622924276.4454722-CDS-S-dermatodea_contig13183:2015..2099Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13183 2016..2099 +
1694079144.1761184-CDS-S-dermatodea_contig13183:2015..20991694079144.1761184-CDS-S-dermatodea_contig13183:2015..2099Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13183 2016..2099 +
1622924276.4571116-CDS-S-dermatodea_contig13183:2531..28161622924276.4571116-CDS-S-dermatodea_contig13183:2531..2816Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13183 2532..2816 +
1694079144.1919887-CDS-S-dermatodea_contig13183:2531..28161694079144.1919887-CDS-S-dermatodea_contig13183:2531..2816Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13183 2532..2816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13183.1900.1

>prot_S-dermatodea_contig13183.1900.1 ID=prot_S-dermatodea_contig13183.1900.1|Name=mRNA_S-dermatodea_contig13183.1900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=224bp
MVSTQMFLGTAASLIASSVAFVAPMAVRSAAPARSSSLKMQSAGSAYVET
LPGAPFGDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGVLVA
EEYHPFFMGPDYVGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAF
DTPSAVTGEGGLKENYNPGDLGFDPLGIKPKDAAGLAAMQTKELNNGRLA
MIGIAGMLVQELVNPADILAFLN*
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mRNA from alignment at S-dermatodea_contig13183:401..4269+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13183.1900.1 ID=mRNA_S-dermatodea_contig13183.1900.1|Name=mRNA_S-dermatodea_contig13183.1900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3869bp|location=Sequence derived from alignment at S-dermatodea_contig13183:401..4269+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCACCACCTCGTCCTCACCACTCTTCTCTCTATCCTCAAGCAACCATGGT GTCTACCCAGATGTTCCTCGGCACTGCTGCCTCCCTCATCGCGTCCTCTG TGGCGTTCGTCGCCCCTATGGCTGTGCGGTCAGCGGCGCCTGCGCGCTCC TCAAGCCTCAAGATGCAGAGCGCCGGCTCCGCGTACGTGGAGACTCTGCC TGGTGCTCCGTTCGGTGACGGCAAGGTGGGTAATTGGGCTCCTATCGATG TGCGCGGCCAACTGAAAATTGTACCATTCATTGTTGTTGCTATGCCAATG TTATCGATGCCTGCCTGAGCCAGGATTGTTTTGTCTCATGCGATGTGGCA CTTTGGAAAAAGAGCTATACTTTGTATTATATATAGGTCTTTTTCCAAAG ATGTGGCATGCACAGCAGTATCTCATAGCCTCTCGGCAGACGAGCGGAAG AGCGGCTGTTCTCCTCCCAAAGATGTCACCGCTATCCCGAGTGCGTACTT GGGTCGTGTCGCTGATCATGACGAGATGCCCCTCCCCCCAGTCTCTGCTC CGCCGAAGACTCTGTGCTGGTGCACATGTATGGAAATAAGTACGCGTTTG CTAATCAACTTGTAACTCTGGCGCTCTCCCTTGCCTGCCTCCACAGATAT TCGACCCGCTTAGCCTTTCCGACGGCGCTGCCCCCGGAGACATCAAGAAG TGGCGCGAGGCCGAGATCAAGCACGGACGCGTGGCCATGTTGGCGTCTCT CGGAGTTCTCGTCGCGGAGGTGAGATATCACTTTTGCTTGTCTTGCTTTT GTGCTCGCGATGTGAGCGCTCGGACGCTCGGCAGGATTATTGAAAAACTT AGTGGTGAACGCCGGCTGTTGCTGAACCCCTCATTTATATTTTTGTGTTG CGTACATGACGCATTGTGCGCATGATGTGAATGTGCGGTTTCGCCCTGAT CCTAACGCACAAGCTTGATAATGTATAGCGACGCCCAGGGTGACGCTGGG CGATGTACTCACCAGTTTCCGCCTTTCGTATCACACGGCGGTCTGCGTAT ACTATACTCCAGTAGTGCTTATTCCTTCAGCAGACGGATGAGAGGCCCAC ACTGCAACCAGTGCTTATACATACGGCAGTTATGACGTCGATAACAATAT CATCCTTATGATACAGTATCAAGAGTGGACCCTTGTTCAGCCATCTTTTA TTCCAATAAACTCCAGTACACTGAGGCCGGATGGATATACCAAATTCCAC ACGATTTACATTTTCAAACGTTCTGCCGACGCACACACCTGACGGGCGTA GCCGTGGCTACCTACTAGTAATAGTTTAATAGGAAAAGTAAGTGTATGGG GCCTTAGTATTACAGGTATCTCGGTGTCCCGCCTTCTATAATCACGGGTC GGACAGAGCCGACATGTGCATGCGACGCCACTATTAATACTTGTAGTTCA GTCGACCTGCCTCTTTCCTTTCTTGGCTAGCAACACCTTCCTGCTCGGAA TTTATATTATAGGACAACACTACTCTGTGCACAAAGTATCGCTTCATGTT ACGAGCCGCTCTCTCAAACCCTCTCGTTCCATATTTCCATTATCTCCCGT GTTGTGCTTGCGCAGGAGTACCACCCGTTCTTCATGGGCCCGGACTACGT TGGCCCCGCCGTGGACCACTTCCAGGAGATCAGCGCGCAGTTCCCCGAGG TAAGCCCACGCCGTTACTGGTATTTCTCCTCAAATCGCGCTTCGAGCTTT GAACGGAAGGGCTGGAAACCTGCATACACGTGAAACCATAGAAGATCTGC TGTTGTAGTACATATCTCTATTCATAGGTCAACGGCATCGCCGTGACGTG TCCCTTCTCACTGGAGTTGGTCAAAATGCGATTAAGAATTTTGGCCCCCT CAAGCTAACCGTACGATTGGGCCGACTTTCACCCAAGGAAGAAGATGGCT TGGTGTCAAGGCTAGGCGTGCCCCTCGCTGTTTCGTCATTCGAACGTATT GGATCTGATTAAAATGAACGAATGTGCTTGATCGGAATTCAAAATGTAGA CATATCGAATACAAACTAACCCCTCTCGCCCACACACCCCCGCCCCCTCT CGCTTGTGGTTTCCACGATGGTGTTGCGCAGTTCTGGGCGTTCTCCTTGC TGGGCATGGCGTTCATCGAGTACAACACCATCATGACCGCGTTCGACACG CCTAGCGCGGTGACCGGCGAGGGGGGGCTGAAGGAGAACTACAACCCGGG AGACCTCGGGTTCGACCCCCTTGGCATCAAGCCTAAGGACGCCGCGGGGC TCGCGGCCATGCAGACGAAGGAGTTGAACAACGGGCGCCTGGCCATGATC GGCATCGCCGGCATGTTGGTTCAGGAGCTGGTGAACCCGGCCGACATCCT AGCGTTCCTCAACTAGGGGGTTCTAGGGCGAGCGAGCCAACGTTCGTTGA TAAATAGCTTGGCCAAGCCCGCGTGGTTGTGTACCCATGGGCATACTAGA GGAGCTAGGCTTCCATTTTGATTCGCCGTTATGGGTGAGCGTGACTGAGC TGGGAGGGGGGGGTCGTGAGGCGCAAGTTTCGAGTTAGTGTGCATAGCAC AGCGCAAGTAGGATTGGTTGGCGTTCCGACATGATGACATGATCGTGATC GTAAGGGTGACGTATTTCCCCTGGCGAGTCTGCGGTTCGTTAATCTGATC TTGGCGTAGTTTTGTTAATCTTGATAATTTTGCCTCTCTAGCGCGCAATT TTGAGATTTTGCAGGTTTGGCCGTCACAGCGGTTGCCGTAGCGGCGTTGC TCGACGAAGGGTTAAGGGTGGTTGAACGCATCTGCAAAATGCATGCCCCC CCGTTTTTGCCTGGCCGATGAATGTTGTAGTTTTGGTACAGTATGCGTTT GTATCTCTGATCGAAGTTTAGCATGATATTCAAGTTGGCTTCTTCCGATG TGGGTGTGGAAAGAGAAGCATGATGGTTAAGCGAAGGCGACGAATAATGT TCTCGGCTGCCTTGAGTGGGAACAACGAAATGAGCTATTACTGAAACAGA AAAAATCACGCCTTCAGTGTGCGTTACACTTTTTGAAACGTCAAGCGACC CAAGCCCCTGGAAGGGTGGGGTGGGGCATACATTTTTGAAATGATTGCGC TGGAAATGAGGTCCGCAGGATGTCCTCGACACTTACAAAGTCTGGCACGA CGCTCTCTCTTTTGAACATATATCTGGCTTGCTAAGCTCACAAAATGATA TCGGTTCCCGATTCAATGGGCATTAGTGTACCCAGTATTTTGAGTGCGTA CGTCGCCACAGAGGCACTGCCCGCCACGCTCGAGGTGATTTCTTTACAGC CTCGTCACTGTTCGCGACTAGCTTTGTTATTTATCTTTGATCTTGATGTG AGGCATGCCGCTTATCCAAATGCGGTGAGAAGATGGGAGAAAGCGCCCCT TCCCATCGCCTGTCGCAGAAGTGCGTCGCCATGAGCCAACAAGCCTGTTC CATGAAGTAGGTGCGAAAAATCCTGCCGCGGTAGACGAATGTTCTTTGTT ATTCTTGTAGGTTTTTCCGAACAAGAATCATATTTGTTTTAATTGTGCAG ACGTCCCGAACGTGCATTTGTAAGGAGATTCCTGGGCGACACGTCTCCTC ACCCGTCCATCGTTTGTCACCGCGCTCCCCGTTTTAACGAGGTTCGGTTA AACACAAAAATAATCGATGTGGAGCCACGGCGCTTCTCCCGCGAAACTGG GGGCTTGGGATATCAACACCACGATTTTAGTACAAGATACGTCCGCACCC TCCGTGAGACGGGGGGGTGGCAAGGCAAACACCGTAGTAGGCGGACATTT CGATTAATCAAAGATGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13183:401..4269+

>mRNA_S-dermatodea_contig13183.1900.1 ID=mRNA_S-dermatodea_contig13183.1900.1|Name=mRNA_S-dermatodea_contig13183.1900.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at S-dermatodea_contig13183:401..4269+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGTCTACCCAGATGTTCCTCGGCACTGCTGCCTCCCTCATCGCGTC
CTCTGTGGCGTTCGTCGCCCCTATGGCTGTGCGGTCAGCGGCGCCTGCGC
GCTCCTCAAGCCTCAAGATGCAGAGCGCCGGCTCCGCGTACGTGGAGACT
CTGCCTGGTGCTCCGTTCGGTGACGGCAAGATGGTGTCTACCCAGATGTT
CCTCGGCACTGCTGCCTCCCTCATCGCGTCCTCTGTGGCGTTCGTCGCCC
CTATGGCTGTGCGGTCAGCGGCGCCTGCGCGCTCCTCAAGCCTCAAGATG
CAGAGCGCCGGCTCCGCGTACGTGGAGACTCTGCCTGGTGCTCCGTTCGG
TGACGGCAAGATATTCGACCCGCTTAGCCTTTCCGACGGCGCTGCCCCCG
GAGACATCAAGAAGTGGCGCGAGGCCGAGATCAAGCACGGACGCGTGGCC
ATGTTGGCGTCTCTCGGAGTTCTCGTCGCGGAGATATTCGACCCGCTTAG
CCTTTCCGACGGCGCTGCCCCCGGAGACATCAAGAAGTGGCGCGAGGCCG
AGATCAAGCACGGACGCGTGGCCATGTTGGCGTCTCTCGGAGTTCTCGTC
GCGGAGGAGTACCACCCGTTCTTCATGGGCCCGGACTACGTTGGCCCCGC
CGTGGACCACTTCCAGGAGATCAGCGCGCAGTTCCCCGAGGAGTACCACC
CGTTCTTCATGGGCCCGGACTACGTTGGCCCCGCCGTGGACCACTTCCAG
GAGATCAGCGCGCAGTTCCCCGAGTTCTGGGCGTTCTCCTTGCTGGGCAT
GGCGTTCATCGAGTACAACACCATCATGACCGCGTTCGACACGCCTAGCG
CGGTGACCGGCGAGGGGGGGCTGAAGGAGAACTACAACCCGGGAGACCTC
GGGTTCGACCCCCTTGGCATCAAGCCTAAGGACGCCGCGGGGCTCGCGGC
CATGCAGACGAAGGAGTTGAACAACGGGCGCCTGGCCATGATCGGCATCG
CCGGCATGTTGGTTCAGGAGCTGGTGAACCCGGCCGACATCCTAGCGTTC
CTCAACTAGTTCTGGGCGTTCTCCTTGCTGGGCATGGCGTTCATCGAGTA
CAACACCATCATGACCGCGTTCGACACGCCTAGCGCGGTGACCGGCGAGG
GGGGGCTGAAGGAGAACTACAACCCGGGAGACCTCGGGTTCGACCCCCTT
GGCATCAAGCCTAAGGACGCCGCGGGGCTCGCGGCCATGCAGACGAAGGA
GTTGAACAACGGGCGCCTGGCCATGATCGGCATCGCCGGCATGTTGGTTC
AGGAGCTGGTGAACCCGGCCGACATCCTAGCGTTCCTCAACTAG
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