mRNA_S-dermatodea_contig86979.16837.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86979.16837.1
Unique NamemRNA_S-dermatodea_contig86979.16837.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: D8LCC3_ECTSI (RHD3c, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC3_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 6.390e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1
Query:    1 TRTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 135
            +RTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY
Sbjct:  105 SRTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 149          
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: A0A6H5KVA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVA5_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.630e-19
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    1 TRTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 135
            T TTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY
Sbjct:  156 TPTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 200          
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: A0A2V3J1Y5_9FLOR (Protein SEY1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1Y5_9FLOR)

HSP 1 Score: 51.6 bits (122), Expect = 2.330e-6
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1
Query:    1 TRTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRL 132
            +RTTLFA+  ADV+++N+WAHDVGR     Y +  +VF  +V L
Sbjct:  103 SRTTLFALALADVVIVNMWAHDVGRYSAANYDLFETVFAHSVAL 146          
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: R7Q455_CHOCR (GB1/RHD3-type G domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q455_CHOCR)

HSP 1 Score: 50.4 bits (119), Expect = 5.980e-6
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 1
Query:    1 TRTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVR 129
            TR   F    ADVI+LN+W HDVGR D   Y++L +VF EA++
Sbjct:  110 TRCAGFVAAIADVILLNMWYHDVGRFDASGYALLDAVFAEAIK 152          
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: A0A314YDY6_PRUYE (Protein ROOT HAIR DEFECTIVE 3 homolog 1 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314YDY6_PRUYE)

HSP 1 Score: 47.4 bits (111), Expect = 9.820e-6
Identity = 18/44 (40.91%), Postives = 31/44 (70.45%), Query Frame = 1
Query:    4 RTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 135
            ++TLFA+  ADV+++N+W HD+GR       +L +VF+  +RL+
Sbjct:   20 QSTLFALAVADVVLINIWCHDIGREHASNKPLLNTVFQVMMRLF 63          
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: UPI000D18AC74 (protein ROOT HAIR DEFECTIVE 3 homolog 2 n=1 Tax=Populus trichocarpa TaxID=3694 RepID=UPI000D18AC74)

HSP 1 Score: 49.7 bits (117), Expect = 1.120e-5
Identity = 18/44 (40.91%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    4 RTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 135
            R+ LFA+  AD++++N+W HD+GR +  + ++L++VFE   RL+
Sbjct:  115 RSALFALAIADIVIINMWCHDIGRDNAASRALLKTVFEAMTRLF 158          
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: A0A5J4YXG9_PORPP (Protein SEY1-like n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXG9_PORPP)

HSP 1 Score: 49.7 bits (117), Expect = 1.120e-5
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1
Query:    7 TTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRL 132
            TTLFA+   DV++LN+W HD+GR     + +L+ VF EA+RL
Sbjct:  160 TTLFALAVCDVVLLNVWFHDLGRYQASNFELLQVVFREALRL 201          
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: A0A7S3DXX4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3DXX4_9CHLO)

HSP 1 Score: 48.5 bits (114), Expect = 1.510e-5
Identity = 19/44 (43.18%), Postives = 32/44 (72.73%), Query Frame = 1
Query:    4 RTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 135
            ++ LFA+  ADV+++NLW HDVGR  G    +L++V +E ++L+
Sbjct:  111 QSALFALAVADVLLINLWHHDVGREQGSGKPLLKTVLQENLKLF 154          
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: M2VU68_GALSU (GTP-binding protein isoform 2 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VU68_GALSU)

HSP 1 Score: 49.3 bits (116), Expect = 1.530e-5
Identity = 20/43 (46.51%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    1 TRTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVR 129
            +R   FA   +DV+++NLW HDVGR +  +YS+LR++F EA +
Sbjct:  105 SRIAGFASAISDVVLINLWFHDVGRTEAASYSLLRAIFVEAAK 147          
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: A0A1R3GLJ0_COCAP (Root hair defective 3 GTP-binding protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3GLJ0_COCAP)

HSP 1 Score: 49.3 bits (116), Expect = 1.530e-5
Identity = 19/44 (43.18%), Postives = 31/44 (70.45%), Query Frame = 1
Query:    4 RTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 135
            ++ LFA+  +D++M+N+W HDVGR  G    +LR+VFE   R++
Sbjct:  114 QSALFALAISDIVMINMWCHDVGREQGACKPLLRTVFEVMKRIF 157          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCC3_ECTSI6.390e-2097.78RHD3c, RHD3/Sey1 family GTPase involved in the ER-... [more]
A0A6H5KVA5_9PHAE1.630e-1997.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V3J1Y5_9FLOR2.330e-650.00Protein SEY1-like n=1 Tax=Gracilariopsis chorda Ta... [more]
R7Q455_CHOCR5.980e-651.16GB1/RHD3-type G domain-containing protein n=1 Tax=... [more]
A0A314YDY6_PRUYE9.820e-640.91Protein ROOT HAIR DEFECTIVE 3 homolog 1 n=1 Tax=Pr... [more]
UPI000D18AC741.120e-540.91protein ROOT HAIR DEFECTIVE 3 homolog 2 n=1 Tax=Po... [more]
A0A5J4YXG9_PORPP1.120e-550.00Protein SEY1-like n=1 Tax=Porphyridium purpureum T... [more]
A0A7S3DXX4_9CHLO1.510e-543.18Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
M2VU68_GALSU1.530e-546.51GTP-binding protein isoform 2 n=2 Tax=Galdieria su... [more]
A0A1R3GLJ0_COCAP1.530e-543.18Root hair defective 3 GTP-binding protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86979contigS-dermatodea_contig86979:150..284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue2e-12
Seed eggNOG ortholog2880.D8LCC3
EggNOG free text desc.GTP binding
EggNOG OGsKOG2203@1,KOG2203@2759
Ec32 ortholog descriptionRHD3c, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic
Ec32 orthologEc-14_005290.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size111
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925359.6559272-UTR-S-dermatodea_contig86979:149..1731622925359.6559272-UTR-S-dermatodea_contig86979:149..173Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86979 150..173 +
1694079880.1939728-UTR-S-dermatodea_contig86979:149..1731694079880.1939728-UTR-S-dermatodea_contig86979:149..173Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86979 150..173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925359.670884-CDS-S-dermatodea_contig86979:173..2841622925359.670884-CDS-S-dermatodea_contig86979:173..284Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86979 174..284 +
1694079880.2083948-CDS-S-dermatodea_contig86979:173..2841694079880.2083948-CDS-S-dermatodea_contig86979:173..284Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86979 174..284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86979.16837.1prot_S-dermatodea_contig86979.16837.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86979 174..284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86979.16837.1

>prot_S-dermatodea_contig86979.16837.1 ID=prot_S-dermatodea_contig86979.16837.1|Name=mRNA_S-dermatodea_contig86979.16837.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=37bp
MAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY
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mRNA from alignment at S-dermatodea_contig86979:150..284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86979.16837.1 ID=mRNA_S-dermatodea_contig86979.16837.1|Name=mRNA_S-dermatodea_contig86979.16837.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at S-dermatodea_contig86979:150..284+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAAGGACCACTCTCTTCGCCGTGATGGCCGCCGACGTGATCATGCTTAA CCTGTGGGCGCACGACGTCGGGCGCGCCGACGGCCAGGCGTACTCCGTCC TGCGCTCCGTGTTCGAGGAGGCGGTGCGGCTGTAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig86979:150..284+

>mRNA_S-dermatodea_contig86979.16837.1 ID=mRNA_S-dermatodea_contig86979.16837.1|Name=mRNA_S-dermatodea_contig86979.16837.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at S-dermatodea_contig86979:150..284+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCGCCGACGTGATCATGCTTAACCTGTGGGCGCACGACGTCGGGCG
CGCCGACGGCCAGGCGTACTCCGTCCTGCGCTCCGTGTTCGAGGAGGCGG
TGCGGCTGTACATGGCCGCCGACGTGATCATGCTTAACCTGTGGGCGCAC
GACGTCGGGCGCGCCGACGGCCAGGCGTACTCCGTCCTGCGCTCCGTGTT
CGAGGAGGCGGTGCGGCTGTAC
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