mRNA_S-dermatodea_contig86979.16837.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: D8LCC3_ECTSI (RHD3c, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC3_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 6.390e-20 Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1
Query: 1 TRTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 135
+RTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY
Sbjct: 105 SRTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 149
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: A0A6H5KVA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVA5_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 1.630e-19 Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 1
Query: 1 TRTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 135
T TTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY
Sbjct: 156 TPTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 200
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: A0A2V3J1Y5_9FLOR (Protein SEY1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1Y5_9FLOR) HSP 1 Score: 51.6 bits (122), Expect = 2.330e-6 Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 1 TRTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRL 132
+RTTLFA+ ADV+++N+WAHDVGR Y + +VF +V L
Sbjct: 103 SRTTLFALALADVVIVNMWAHDVGRYSAANYDLFETVFAHSVAL 146
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: R7Q455_CHOCR (GB1/RHD3-type G domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q455_CHOCR) HSP 1 Score: 50.4 bits (119), Expect = 5.980e-6 Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 1
Query: 1 TRTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVR 129
TR F ADVI+LN+W HDVGR D Y++L +VF EA++
Sbjct: 110 TRCAGFVAAIADVILLNMWYHDVGRFDASGYALLDAVFAEAIK 152
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: A0A314YDY6_PRUYE (Protein ROOT HAIR DEFECTIVE 3 homolog 1 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314YDY6_PRUYE) HSP 1 Score: 47.4 bits (111), Expect = 9.820e-6 Identity = 18/44 (40.91%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 4 RTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 135
++TLFA+ ADV+++N+W HD+GR +L +VF+ +RL+
Sbjct: 20 QSTLFALAVADVVLINIWCHDIGREHASNKPLLNTVFQVMMRLF 63
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: UPI000D18AC74 (protein ROOT HAIR DEFECTIVE 3 homolog 2 n=1 Tax=Populus trichocarpa TaxID=3694 RepID=UPI000D18AC74) HSP 1 Score: 49.7 bits (117), Expect = 1.120e-5 Identity = 18/44 (40.91%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 4 RTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 135
R+ LFA+ AD++++N+W HD+GR + + ++L++VFE RL+
Sbjct: 115 RSALFALAIADIVIINMWCHDIGRDNAASRALLKTVFEAMTRLF 158
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: A0A5J4YXG9_PORPP (Protein SEY1-like n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXG9_PORPP) HSP 1 Score: 49.7 bits (117), Expect = 1.120e-5 Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1
Query: 7 TTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRL 132
TTLFA+ DV++LN+W HD+GR + +L+ VF EA+RL
Sbjct: 160 TTLFALAVCDVVLLNVWFHDLGRYQASNFELLQVVFREALRL 201
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: A0A7S3DXX4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3DXX4_9CHLO) HSP 1 Score: 48.5 bits (114), Expect = 1.510e-5 Identity = 19/44 (43.18%), Postives = 32/44 (72.73%), Query Frame = 1
Query: 4 RTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 135
++ LFA+ ADV+++NLW HDVGR G +L++V +E ++L+
Sbjct: 111 QSALFALAVADVLLINLWHHDVGREQGSGKPLLKTVLQENLKLF 154
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: M2VU68_GALSU (GTP-binding protein isoform 2 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VU68_GALSU) HSP 1 Score: 49.3 bits (116), Expect = 1.530e-5 Identity = 20/43 (46.51%), Postives = 31/43 (72.09%), Query Frame = 1
Query: 1 TRTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVR 129
+R FA +DV+++NLW HDVGR + +YS+LR++F EA +
Sbjct: 105 SRIAGFASAISDVVLINLWFHDVGRTEAASYSLLRAIFVEAAK 147
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Match: A0A1R3GLJ0_COCAP (Root hair defective 3 GTP-binding protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3GLJ0_COCAP) HSP 1 Score: 49.3 bits (116), Expect = 1.530e-5 Identity = 19/44 (43.18%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 4 RTTLFAVMAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLY 135
++ LFA+ +D++M+N+W HDVGR G +LR+VFE R++
Sbjct: 114 QSALFALAISDIVMINMWCHDVGREQGACKPLLRTVFEVMKRIF 157 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86979.16837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig86979.16837.1 >prot_S-dermatodea_contig86979.16837.1 ID=prot_S-dermatodea_contig86979.16837.1|Name=mRNA_S-dermatodea_contig86979.16837.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=37bp MAADVIMLNLWAHDVGRADGQAYSVLRSVFEEAVRLYback to top mRNA from alignment at S-dermatodea_contig86979:150..284+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig86979.16837.1 ID=mRNA_S-dermatodea_contig86979.16837.1|Name=mRNA_S-dermatodea_contig86979.16837.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at S-dermatodea_contig86979:150..284+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig86979:150..284+ >mRNA_S-dermatodea_contig86979.16837.1 ID=mRNA_S-dermatodea_contig86979.16837.1|Name=mRNA_S-dermatodea_contig86979.16837.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at S-dermatodea_contig86979:150..284+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |