mRNA_S-dermatodea_contig12005.1249.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12005.1249.1
Unique NamemRNA_S-dermatodea_contig12005.1249.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: D8LB66_ECTSI (Cyclin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB66_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 6.920e-71
Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 1
Query:  214 MEIEVGSLRCMAPSLGIPPQRHYDPSDAEDAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLTCTGQDEPPLLDK 582
            MEI+VGSLRC+AP+LGIPP RHYDPSDAEDAALRLEWAK LFRAGYRLR+PQ  TTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHML  TGQDEPPLLDK
Sbjct:    1 MEIDVGSLRCVAPALGIPPNRHYDPSDAEDAALRLEWAKVLFRAGYRLRFPQG-TTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLNSTGQDEPPLLDK 122          
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A835YQW0_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW0_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.040e-23
Identity = 61/123 (49.59%), Postives = 74/123 (60.16%), Query Frame = 1
Query:  226 VGSLRCMAPSLGIPPQRHYDPSDAEDAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRD-VILTTCLFLAGKVTEAPRRLRDVINVLHMLTCT---GQDEPPLLDK 582
            + +LR ++P+L          S  ED   R  W   +FRAG+RLRYPQ ETT TA++LFHRF   E     +R R  V+L TCLFLAGKV E PRRLRDVIN LH+       G  EPP LD+
Sbjct:   10 LAALRHLSPALSSGATSRSGGSQ-EDLRRRRGWTAAMFRAGHRLRYPQ-ETTSTAIILFHRFCESEAQALRQRDRRLVVLVTCLFLAGKVRETPRRLRDVINCLHVTAAEPGGGAVEPPRLDQ 130          
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: W7TSF1_9STRA (Cyclin-l1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSF1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 9.180e-13
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  310 LRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSR--DVILTTCLFLAGKVTEAPRRLRDVINVLHML 543
            +R +  + L  AG RLR PQ ET  TA L+FHRF     + ++ R+R  DV+LTTCLFLA KV E PRR+RD IN ++++
Sbjct:   34 IRQDSVRVLLDAGRRLRLPQ-ETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVV 112          
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A7S1CMQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMQ2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.360e-9
Identity = 47/111 (42.34%), Postives = 53/111 (47.75%), Query Frame = 1
Query:  253 SLGIPPQRHYDPSDAEDAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLTCTGQDEPPL-LDK 582
            +L     RH D +  ED  LR     F    G  L  PQ  T   AV   HRF I     KH     V+ T CLFLA KV E PRRLRDV+N    +  +  D PPL LDK
Sbjct:   24 ALAAAAARHADVTPEEDRTLRRACWAFACDVGLGLDVPQN-TVAAAVQFCHRFFIVNSFRKH--DPYVVSTACLFLACKVEETPRRLRDVLNCAWAVRYS--DAPPLALDK 129          
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A6A2YG45_HIBSY (Cyclin-T1-4 n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YG45_HIBSY)

HSP 1 Score: 65.1 bits (157), Expect = 6.310e-9
Identity = 37/78 (47.44%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  298 EDAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINV 531
            ++  LR  +  FL   G RL+ PQ  T  TA++  HRF IQ+   KH   R  I T C+FLAGKV E PR L+DVI V
Sbjct:   55 KETYLRKSYCTFLQDLGMRLKVPQV-TIATAIIFCHRFFIQQSHAKH--DRRTIATVCMFLAGKVEETPRPLKDVILV 129          
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A672YP81_9TELE (Cyclin-L1 n=6 Tax=Percomorphaceae TaxID=1489872 RepID=A0A672YP81_9TELE)

HSP 1 Score: 62.8 bits (151), Expect = 7.030e-9
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  310 LRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHML 543
            LR+   + +  AG  LR PQ    GT  +LFHRF   +   KH  S +++   C+ LA K+ EAPRR+RDVINV H L
Sbjct:   92 LRILGCELIQSAGILLRLPQV-AMGTGQVLFHRFFYSKSFVKH--SFEIVAMACINLASKIEEAPRRIRDVINVFHHL 166          
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A836D856_SHEEP (Cyclin-L1 n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A836D856_SHEEP)

HSP 1 Score: 60.8 bits (146), Expect = 7.340e-9
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  286 PSDAEDAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHML 543
            PS+ +   LR+   + +  AG  LR PQ     T  +LFHRF   +   KH  S +++   C+ LA K+ EAPRR+RDVINV H L
Sbjct:    8 PSETD---LRILGCELIQAAGILLRLPQV-AMATGQVLFHRFFYSKSFVKH--SFEIVAMACINLASKIEEAPRRIRDVINVFHHL 87          
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: C1FEH1_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FEH1_MICCC)

HSP 1 Score: 63.5 bits (153), Expect = 9.220e-9
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 1
Query:  259 GIPPQRHYDPSDAEDAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHML 543
            G  P R +      +A  R  + +FL   G  L+ PQ  T  TAV+L HRF  +   G     R ++ T CLFLA KV E P+ L++V+ V +++
Sbjct:   10 GNSPSREHGIGARLEATFRWSYCEFLKDVGIELKMPQL-TIATAVVLCHRFYAKHSHGIKENDRFIVATACLFLAAKVEETPKPLKEVVRVAYLV 103          
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A2P6NCA9_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NCA9_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 1.120e-8
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1
Query:  313 RLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHML 543
            R +   F+  AG  LR PQ  T  TA++ FHRF    +  ++   RD++ TTCLFLAGK  E P++L+DVI + H +
Sbjct:   29 RKKTCAFIQEAGMNLRLPQL-TIATALVYFHRFFANHKFKEY--DRDIVGTTCLFLAGKTEETPKKLKDVIEMSHRI 102          
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A8C6NVC2_NOTFU (Cyclin-L1 n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6NVC2_NOTFU)

HSP 1 Score: 61.2 bits (147), Expect = 1.590e-8
Identity = 39/94 (41.49%), Postives = 50/94 (53.19%), Query Frame = 1
Query:  265 PPQRHYDPSDAE-DAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHML 543
            P     D  DA  +  LR+   + L  AG  LR PQ     T  +LFHRF   +   KH  S +++   C+ LA K+ EAPRR+RDVINV H L
Sbjct:   48 PTPSMLDGLDANTETDLRILGCELLQSAGILLRLPQV-ALATGQVLFHRFFYSKSFVKH--SFEIVAMACVNLASKIEEAPRRIRDVINVFHHL 138          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB66_ECTSI6.920e-7191.87Cyclin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB66_... [more]
A0A835YQW0_9STRA3.040e-2349.59Cyclin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
W7TSF1_9STRA9.180e-1350.00Cyclin-l1 n=2 Tax=Monodopsidaceae TaxID=425072 Rep... [more]
A0A7S1CMQ2_9STRA4.360e-942.34Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6A2YG45_HIBSY6.310e-947.44Cyclin-T1-4 n=2 Tax=Hibiscus syriacus TaxID=106335... [more]
A0A672YP81_9TELE7.030e-944.87Cyclin-L1 n=6 Tax=Percomorphaceae TaxID=1489872 Re... [more]
A0A836D856_SHEEP7.340e-941.86Cyclin-L1 n=3 Tax=Boreoeutheria TaxID=1437010 RepI... [more]
C1FEH1_MICCC9.220e-935.79Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A2P6NCA9_9EUKA1.120e-842.86Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A8C6NVC2_NOTFU1.590e-841.49Cyclin-L1 n=1 Tax=Nothobranchius furzeri TaxID=105... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12005contigS-dermatodea_contig12005:112..1440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.1
Seed ortholog evalue2.8e-58
Seed eggNOG ortholog2880.D8LB66
EggNOG free text desc.positive regulation of phosphorylation of RNA polymerase II C-terminal domain
EggNOG OGsCOG5333@1,KOG0835@2759
COG Functional cat.DKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclin-like
Ec32 orthologEc-27_005020.1
Exons2
Model size582
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12005.1249.1prot_S-dermatodea_contig12005.1249.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12005 325..1440 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924227.0635636-UTR-S-dermatodea_contig12005:111..3241622924227.0635636-UTR-S-dermatodea_contig12005:111..324Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12005 112..324 +
1694079108.3448932-UTR-S-dermatodea_contig12005:111..3241694079108.3448932-UTR-S-dermatodea_contig12005:111..324Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12005 112..324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924227.0721412-CDS-S-dermatodea_contig12005:324..4801622924227.0721412-CDS-S-dermatodea_contig12005:324..480Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12005 325..480 +
1694079108.354544-CDS-S-dermatodea_contig12005:324..4801694079108.354544-CDS-S-dermatodea_contig12005:324..480Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12005 325..480 +
1622924227.0826347-CDS-S-dermatodea_contig12005:1227..14401622924227.0826347-CDS-S-dermatodea_contig12005:1227..1440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12005 1228..1440 +
1694079108.3623178-CDS-S-dermatodea_contig12005:1227..14401694079108.3623178-CDS-S-dermatodea_contig12005:1227..1440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12005 1228..1440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12005.1249.1

>prot_S-dermatodea_contig12005.1249.1 ID=prot_S-dermatodea_contig12005.1249.1|Name=mRNA_S-dermatodea_contig12005.1249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=123bp
MEIEVGSLRCMAPSLGIPPQRHYDPSDAEDAALRLEWAKFLFRAGYRLRY
PQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRL
RDVINVLHMLTCTGQDEPPLLDK
back to top

mRNA from alignment at S-dermatodea_contig12005:112..1440+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12005.1249.1 ID=mRNA_S-dermatodea_contig12005.1249.1|Name=mRNA_S-dermatodea_contig12005.1249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1329bp|location=Sequence derived from alignment at S-dermatodea_contig12005:112..1440+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AATGCACGAAAGGCGAGGCATTCCCATGTAATGCGGGCCTGTACCAGCAG CCAGAGAGGGAAAGGGTGAGTATCTCCCGCGACAAGCACCAGGGAGACGA CGCGAACATACCTACTTTCTCCACACCGCGTTATTATCTCTCTAGTCGAA GGTCTCCCCACTCTGCTCTTTCGCGCAGAGCACGGACACCGCGCAAAGCA CGGGCATCGCAGAATGGAGATCGAAGTGGGCTCCCTTCGATGCATGGCGC CCTCCCTCGGGATACCCCCACAACGGCACTACGACCCCAGCGATGCGGAG GACGCGGCCCTGAGGCTGGAGTGGGCCAAATTTCTCTTCCGTGCTGGCTA CCGCCTGCGCTACCCTCAGGTGAGGCGAAGGCGCTTACTCTTTCCGGTAG GTATCGTCACCCATTTCCCATCTCCCAAGCTGCAAGACGGGGAGCGGCCG AATTTGCCCCATTCGGATATTTTGGCGGCTCCGGTTGTCTCTTGCAGGAA CGGGTGGGCAATGCACCCACATGCGATGGCCATGTACATATAATGCGACA CCGAACCCTGATGTACGGAGCCCCTAGCTCCAGTTGGGTTAGACCGCAAG ATGTGCACGTGATGCCAACAAGCTCATACAGAAGACTGTGTTTTTTTTTT TTTTTCCGGATTCAAATTGCTGTGTGCATGTGTTGCCGCGGGACAACCGG CACCTCGTCTTGCTCCGCGGTCTCCTCTCGGCCCCGCCTTGCGTTCTTGA TTGTCCTGAACTCACGCAATTCGTCACTGCACTCTTCGCACATAAGTAGA CACGGCCATTTCGGCCAAGTACCTTGCTGGCAATGTAATTGTCGTATGAT GCGCACATGAAAGAGGATAAGGCGGAGCTAAGCCCAGGTAGATTAAACAC CCCCTCCTCTCTCTCCTTTCATCGCTATATACTGTATCAATCACAACATA AACCTAACGCTTCCTGCTGTATTCGCCCCTGCTGTATTCGCCCGCAACTC GGAGAGCATGAATACTTCCAACCTTCTAAACAAGTTACTTCTTGGCCAAC TCTCGCCGTGCCTGCGCCTCTTGCCTTCTATGTCTGCTCCACGCCGTCGA CGTGCCCGGGGAAGAGCAGGAGACTACGGGTACCGCCGTGCTGCTATTCC ACCGCTTCCTTATCCAGGAGCGCGTGGGCAAACACCGCCGCAGCCGAGAC GTCATCCTGACGACGTGCCTCTTTCTGGCCGGGAAGGTCACAGAGGCCCC TCGCCGCCTGCGGGACGTTATTAACGTGCTCCACATGCTGACTTGCACGG GGCAGGACGAGCCTCCTCTTCTCGATAAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12005:112..1440+

>mRNA_S-dermatodea_contig12005.1249.1 ID=mRNA_S-dermatodea_contig12005.1249.1|Name=mRNA_S-dermatodea_contig12005.1249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at S-dermatodea_contig12005:112..1440+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGATCGAAGTGGGCTCCCTTCGATGCATGGCGCCCTCCCTCGGGAT
ACCCCCACAACGGCACTACGACCCCAGCGATGCGGAGGACGCGGCCCTGA
GGCTGGAGTGGGCCAAATTTCTCTTCCGTGCTGGCTACCGCCTGCGCTAC
CCTCAGATGGAGATCGAAGTGGGCTCCCTTCGATGCATGGCGCCCTCCCT
CGGGATACCCCCACAACGGCACTACGACCCCAGCGATGCGGAGGACGCGG
CCCTGAGGCTGGAGTGGGCCAAATTTCTCTTCCGTGCTGGCTACCGCCTG
CGCTACCCTCAGCAGGAGACTACGGGTACCGCCGTGCTGCTATTCCACCG
CTTCCTTATCCAGGAGCGCGTGGGCAAACACCGCCGCAGCCGAGACGTCA
TCCTGACGACGTGCCTCTTTCTGGCCGGGAAGGTCACAGAGGCCCCTCGC
CGCCTGCGGGACGTTATTAACGTGCTCCACATGCTGACTTGCACGGGGCA
GGACGAGCCTCCTCTTCTCGATAAGCAGGAGACTACGGGTACCGCCGTGC
TGCTATTCCACCGCTTCCTTATCCAGGAGCGCGTGGGCAAACACCGCCGC
AGCCGAGACGTCATCCTGACGACGTGCCTCTTTCTGGCCGGGAAGGTCAC
AGAGGCCCCTCGCCGCCTGCGGGACGTTATTAACGTGCTCCACATGCTGA
CTTGCACGGGGCAGGACGAGCCTCCTCTTCTCGATAAG
back to top