mRNA_S-dermatodea_contig12005.1249.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: D8LB66_ECTSI (Cyclin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB66_ECTSI) HSP 1 Score: 230 bits (586), Expect = 6.920e-71 Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 1
Query: 214 MEIEVGSLRCMAPSLGIPPQRHYDPSDAEDAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLTCTGQDEPPLLDK 582
MEI+VGSLRC+AP+LGIPP RHYDPSDAEDAALRLEWAK LFRAGYRLR+PQ TTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHML TGQDEPPLLDK
Sbjct: 1 MEIDVGSLRCVAPALGIPPNRHYDPSDAEDAALRLEWAKVLFRAGYRLRFPQG-TTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLNSTGQDEPPLLDK 122
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A835YQW0_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW0_9STRA) HSP 1 Score: 103 bits (256), Expect = 3.040e-23 Identity = 61/123 (49.59%), Postives = 74/123 (60.16%), Query Frame = 1
Query: 226 VGSLRCMAPSLGIPPQRHYDPSDAEDAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRD-VILTTCLFLAGKVTEAPRRLRDVINVLHMLTCT---GQDEPPLLDK 582
+ +LR ++P+L S ED R W +FRAG+RLRYPQ ETT TA++LFHRF E +R R V+L TCLFLAGKV E PRRLRDVIN LH+ G EPP LD+
Sbjct: 10 LAALRHLSPALSSGATSRSGGSQ-EDLRRRRGWTAAMFRAGHRLRYPQ-ETTSTAIILFHRFCESEAQALRQRDRRLVVLVTCLFLAGKVRETPRRLRDVINCLHVTAAEPGGGAVEPPRLDQ 130
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: W7TSF1_9STRA (Cyclin-l1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSF1_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 9.180e-13 Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 310 LRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSR--DVILTTCLFLAGKVTEAPRRLRDVINVLHML 543
+R + + L AG RLR PQ ET TA L+FHRF + ++ R+R DV+LTTCLFLA KV E PRR+RD IN ++++
Sbjct: 34 IRQDSVRVLLDAGRRLRLPQ-ETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVV 112
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A7S1CMQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMQ2_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 4.360e-9 Identity = 47/111 (42.34%), Postives = 53/111 (47.75%), Query Frame = 1
Query: 253 SLGIPPQRHYDPSDAEDAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHMLTCTGQDEPPL-LDK 582
+L RH D + ED LR F G L PQ T AV HRF I KH V+ T CLFLA KV E PRRLRDV+N + + D PPL LDK
Sbjct: 24 ALAAAAARHADVTPEEDRTLRRACWAFACDVGLGLDVPQN-TVAAAVQFCHRFFIVNSFRKH--DPYVVSTACLFLACKVEETPRRLRDVLNCAWAVRYS--DAPPLALDK 129
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A6A2YG45_HIBSY (Cyclin-T1-4 n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YG45_HIBSY) HSP 1 Score: 65.1 bits (157), Expect = 6.310e-9 Identity = 37/78 (47.44%), Postives = 46/78 (58.97%), Query Frame = 1
Query: 298 EDAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINV 531
++ LR + FL G RL+ PQ T TA++ HRF IQ+ KH R I T C+FLAGKV E PR L+DVI V
Sbjct: 55 KETYLRKSYCTFLQDLGMRLKVPQV-TIATAIIFCHRFFIQQSHAKH--DRRTIATVCMFLAGKVEETPRPLKDVILV 129
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A672YP81_9TELE (Cyclin-L1 n=6 Tax=Percomorphaceae TaxID=1489872 RepID=A0A672YP81_9TELE) HSP 1 Score: 62.8 bits (151), Expect = 7.030e-9 Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1
Query: 310 LRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHML 543
LR+ + + AG LR PQ GT +LFHRF + KH S +++ C+ LA K+ EAPRR+RDVINV H L
Sbjct: 92 LRILGCELIQSAGILLRLPQV-AMGTGQVLFHRFFYSKSFVKH--SFEIVAMACINLASKIEEAPRRIRDVINVFHHL 166
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A836D856_SHEEP (Cyclin-L1 n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A836D856_SHEEP) HSP 1 Score: 60.8 bits (146), Expect = 7.340e-9 Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 286 PSDAEDAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHML 543
PS+ + LR+ + + AG LR PQ T +LFHRF + KH S +++ C+ LA K+ EAPRR+RDVINV H L
Sbjct: 8 PSETD---LRILGCELIQAAGILLRLPQV-AMATGQVLFHRFFYSKSFVKH--SFEIVAMACINLASKIEEAPRRIRDVINVFHHL 87
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: C1FEH1_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FEH1_MICCC) HSP 1 Score: 63.5 bits (153), Expect = 9.220e-9 Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 1
Query: 259 GIPPQRHYDPSDAEDAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHML 543
G P R + +A R + +FL G L+ PQ T TAV+L HRF + G R ++ T CLFLA KV E P+ L++V+ V +++
Sbjct: 10 GNSPSREHGIGARLEATFRWSYCEFLKDVGIELKMPQL-TIATAVVLCHRFYAKHSHGIKENDRFIVATACLFLAAKVEETPKPLKEVVRVAYLV 103
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A2P6NCA9_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NCA9_9EUKA) HSP 1 Score: 64.3 bits (155), Expect = 1.120e-8 Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 313 RLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHML 543
R + F+ AG LR PQ T TA++ FHRF + ++ RD++ TTCLFLAGK E P++L+DVI + H +
Sbjct: 29 RKKTCAFIQEAGMNLRLPQL-TIATALVYFHRFFANHKFKEY--DRDIVGTTCLFLAGKTEETPKKLKDVIEMSHRI 102
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Match: A0A8C6NVC2_NOTFU (Cyclin-L1 n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6NVC2_NOTFU) HSP 1 Score: 61.2 bits (147), Expect = 1.590e-8 Identity = 39/94 (41.49%), Postives = 50/94 (53.19%), Query Frame = 1
Query: 265 PPQRHYDPSDAE-DAALRLEWAKFLFRAGYRLRYPQQETTGTAVLLFHRFLIQERVGKHRRSRDVILTTCLFLAGKVTEAPRRLRDVINVLHML 543
P D DA + LR+ + L AG LR PQ T +LFHRF + KH S +++ C+ LA K+ EAPRR+RDVINV H L
Sbjct: 48 PTPSMLDGLDANTETDLRILGCELLQSAGILLRLPQV-ALATGQVLFHRFFYSKSFVKH--SFEIVAMACVNLASKIEEAPRRIRDVINVFHHL 138 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12005.1249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12005.1249.1 >prot_S-dermatodea_contig12005.1249.1 ID=prot_S-dermatodea_contig12005.1249.1|Name=mRNA_S-dermatodea_contig12005.1249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=123bp MEIEVGSLRCMAPSLGIPPQRHYDPSDAEDAALRLEWAKFLFRAGYRLRYback to top mRNA from alignment at S-dermatodea_contig12005:112..1440+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12005.1249.1 ID=mRNA_S-dermatodea_contig12005.1249.1|Name=mRNA_S-dermatodea_contig12005.1249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1329bp|location=Sequence derived from alignment at S-dermatodea_contig12005:112..1440+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12005:112..1440+ >mRNA_S-dermatodea_contig12005.1249.1 ID=mRNA_S-dermatodea_contig12005.1249.1|Name=mRNA_S-dermatodea_contig12005.1249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at S-dermatodea_contig12005:112..1440+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |