mRNA_P-littoralis_Contig165.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig165.32.1
Unique NamemRNA_P-littoralis_Contig165.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig165.32.1 vs. uniprot
Match: D7G5B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B7_ECTSI)

HSP 1 Score: 427 bits (1099), Expect = 2.130e-131
Identity = 228/402 (56.72%), Postives = 275/402 (68.41%), Query Frame = 2
Query:  941 DGQEQGHGRDWAKRWALTCSAVV-LAPVVLVCILMGVLLAWPHMKLAAGSALSGLRGLAVNSP--EKCFLLPSERGTAACKEGAEITDCPSQGVCGAGRLLTCNLPFTTTEDSSDCILTAEVEEEAQAVVEALRTLTIEQLCKGNGLIMPSPKASVTTSFITLTDAAIAQKRGPLSFLAGMQPGNVAGLIELDGKAATEFGGGEGGSE--------RTARLSKIMYDEVMLTPGWRCKARLAAGSWVLAYWPYCLAVYVLVLVVGCLDFRRWKSYRTRVQVCTIRDKCYQVLLHHATTDDA-LQVSHIQSSLGDRRGARGEGSLTTIPQEDVIELWPLVEKEVEKDTRIRRNFMNMRGQRNVACWKWVGPAGTKFESIGDLPPGPAPRLWLLRWLNQPRPTP 2110
            DG +    R  +  W   C+ VV LAPVV++ ++ G+L+AWPH+++AAG A    RGL   +P  EKCFL P E+    CK G E  DCP    CGAGR+L CNLP+T  +D + C+L AE E+EA+AVVEALRTLT E+LCKG GLIMP  +AS   SFITLTDAA AQ RGPLS LAGM PGNV GLIEL+G+ A  FGGG+ G+E        R ARLS+  +D VM T GWRCKARLAAGSW + YW YCLA+Y LV+   CLD RR  SY   VQVCTIRD CYQ LL HA+ D + +QVSHIQSS+ D    R   +  TI Q  +  LWPLVE+EVE D RIRR + ++ G+R+VACWKWVGP GT+FE+IG L PG APRL LL    + RP P
Sbjct:  285 DGDDARPRRGKSLEWTFKCAVVVVLAPVVVLLLVSGLLVAWPHVQVAAGGAWGAFRGLTAKTPSVEKCFLQPGEQEDIVCKSGTEAMDCPDHATCGAGRILHCNLPYTLRKDRAACVLVAEAEKEAKAVVEALRTLTAEELCKGKGLIMP--RASARGSFITLTDAATAQSRGPLSLLAGMPPGNVVGLIELEGEPAQVFGGGQDGAEGCAGSGMERVARLSESAHDAVMRTLGWRCKARLAAGSWFMTYWQYCLAMYCLVVGAVCLDLRRRNSYYRHVQVCTIRDLCYQTLLDHASKDSSPMQVSHIQSSVTDWTRQRVAKNRATI-QRHIAGLWPLVEREVEHDERIRRCYKSLAGKRSVACWKWVGPTGTRFETIGALNPGRAPRLLLLWCQERARPMP 683          
BLAST of mRNA_P-littoralis_Contig165.32.1 vs. uniprot
Match: A0A6H5L750_9PHAE (MSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L750_9PHAE)

HSP 1 Score: 419 bits (1078), Expect = 4.940e-128
Identity = 223/387 (57.62%), Postives = 268/387 (69.25%), Query Frame = 2
Query:  983 WALTCSAVVLAPVVLVCILMGVLLAWPHMKLAAGSALSGLRGLAVNSP--EKCFLLPSERGTAACKEGAEITDCPSQGVCGAGRLLTCNLPFTTTEDSSDCILTAEVEEEAQAVVEALRTLTIEQLCKGNGLIMPSPKASVTTSFITLTDAAIAQKRGPLSFLAGMQPGNVAGLIELDGKAATEFGGGEGGSE--------RTARLSKIMYDEVMLTPGWRCKARLAAGSWVLAYWPYCLAVYVLVLVVGCLDFRRWKSYRTRVQVCTIRDKCYQVLLHHATTDD-ALQVSHIQSSLGDRRGARGEGSLTTIPQEDVIELWPLVEKEVEKDTRIRRNFMNMRGQRNVACWKWVGPAGTKFESIGDLPPGPAPRLWLLRWLNQPRPTP 2110
            WA  C+ V++  ++LV    G+L+AWP +++AAG A    RGL   +P  EKCFL   E+G   CK G E TDCP+   CGAGR+L CNLP+T  +D + C+L AE EEEA+AVVEALRTLT E+LCKG GLIMP  +AS   SFITLTDAA AQ RGPLS LAGM PGNV GLIEL+G+ A  FGGG+ G+E        R ARLS+  +D VM T GWRCKARLAAGSW + YW YCLA+Y LV+   CLD RR  SY   VQVCTIRD CYQ LL +A+ D  A+QVSHIQSS+ D    R   +  TI +  + +LWPLVE+EVE D RIRR + ++ G+RNVACWKWVGP GT FE+IG L PG APRL  LR   + RP P
Sbjct:  339 WAFKCAVVMVMVLLLVS---GLLVAWPQVQVAAGGAWGAFRGLTAKTPPVEKCFLQLGEQGDVVCKSGTEATDCPAHATCGAGRILHCNLPYTLKKDRAACVLVAEAEEEAKAVVEALRTLTAEELCKGKGLIMP--RASSRGSFITLTDAATAQNRGPLSLLAGMPPGNVVGLIELEGEPAQVFGGGQDGAEDCAGSGMERVARLSESAHDAVMDTLGWRCKARLAAGSWFMTYWQYCLAMYCLVVGAVCLDLRRRNSYYRHVQVCTIRDVCYQTLLDNASKDSSAMQVSHIQSSVTDWTRQRVAKNRATIHRH-IADLWPLVEREVEHDERIRRCYKSLAGKRNVACWKWVGPTGTSFETIGALNPGRAPRLLFLRCQERERPMP 719          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig165.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5B7_ECTSI2.130e-13156.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L750_9PHAE4.940e-12857.62MSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig165contigP-littoralis_Contig165:103296..116368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3675
Hectar predicted targeting categoryother localisation
Exons13
Cds size2097
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789795.5673554-UTR-P-littoralis_Contig165:103295..1033111680789795.5673554-UTR-P-littoralis_Contig165:103295..103311Pylaiella littoralis U1_48UTRP-littoralis_Contig165 103296..103311 +
1680789795.7181444-UTR-P-littoralis_Contig165:114806..1163681680789795.7181444-UTR-P-littoralis_Contig165:114806..116368Pylaiella littoralis U1_48UTRP-littoralis_Contig165 114807..116368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789795.5767136-CDS-P-littoralis_Contig165:103311..1033791680789795.5767136-CDS-P-littoralis_Contig165:103311..103379Pylaiella littoralis U1_48CDSP-littoralis_Contig165 103312..103379 +
1680789795.5855424-CDS-P-littoralis_Contig165:107038..1071011680789795.5855424-CDS-P-littoralis_Contig165:107038..107101Pylaiella littoralis U1_48CDSP-littoralis_Contig165 107039..107101 +
1680789795.599781-CDS-P-littoralis_Contig165:107863..1079031680789795.599781-CDS-P-littoralis_Contig165:107863..107903Pylaiella littoralis U1_48CDSP-littoralis_Contig165 107864..107903 +
1680789795.6077638-CDS-P-littoralis_Contig165:108602..1094111680789795.6077638-CDS-P-littoralis_Contig165:108602..109411Pylaiella littoralis U1_48CDSP-littoralis_Contig165 108603..109411 +
1680789795.61578-CDS-P-littoralis_Contig165:109691..1098441680789795.61578-CDS-P-littoralis_Contig165:109691..109844Pylaiella littoralis U1_48CDSP-littoralis_Contig165 109692..109844 +
1680789795.6249907-CDS-P-littoralis_Contig165:110464..1106471680789795.6249907-CDS-P-littoralis_Contig165:110464..110647Pylaiella littoralis U1_48CDSP-littoralis_Contig165 110465..110647 +
1680789795.6356907-CDS-P-littoralis_Contig165:110989..1111031680789795.6356907-CDS-P-littoralis_Contig165:110989..111103Pylaiella littoralis U1_48CDSP-littoralis_Contig165 110990..111103 +
1680789795.648142-CDS-P-littoralis_Contig165:111439..1116561680789795.648142-CDS-P-littoralis_Contig165:111439..111656Pylaiella littoralis U1_48CDSP-littoralis_Contig165 111440..111656 +
1680789795.655902-CDS-P-littoralis_Contig165:112402..1124861680789795.655902-CDS-P-littoralis_Contig165:112402..112486Pylaiella littoralis U1_48CDSP-littoralis_Contig165 112403..112486 +
1680789795.6657004-CDS-P-littoralis_Contig165:112889..1129581680789795.6657004-CDS-P-littoralis_Contig165:112889..112958Pylaiella littoralis U1_48CDSP-littoralis_Contig165 112890..112958 +
1680789795.6806815-CDS-P-littoralis_Contig165:113391..1134931680789795.6806815-CDS-P-littoralis_Contig165:113391..113493Pylaiella littoralis U1_48CDSP-littoralis_Contig165 113392..113493 +
1680789795.6922092-CDS-P-littoralis_Contig165:113949..1140721680789795.6922092-CDS-P-littoralis_Contig165:113949..114072Pylaiella littoralis U1_48CDSP-littoralis_Contig165 113950..114072 +
1680789795.706104-CDS-P-littoralis_Contig165:114734..1148061680789795.706104-CDS-P-littoralis_Contig165:114734..114806Pylaiella littoralis U1_48CDSP-littoralis_Contig165 114735..114806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig165.32.1prot_P-littoralis_Contig165.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig165 103312..114806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig165.32.1

>prot_P-littoralis_Contig165.32.1 ID=prot_P-littoralis_Contig165.32.1|Name=mRNA_P-littoralis_Contig165.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=699bp
MTRTMPTAKPRDEASTSPAEKRRRLAAGRAKARESSVNKSSLKRKSSGAE
GPTPPTKPRKQANPATATKEEARRASRKLAEMSAKRRKLAGESATRSIPN
GAGARDGGSSDEGSEEEDGMDTSGVDTPPTLVEPSPNRAAQPSPAAVTLS
SRSRLGVSDQTQPAPPMPETRAPGRWLSATSTSRPAVGGGGSPPSPFPPQ
GARGARQVSGRGENQEAGASRRGSSFLQHANTESKNTNGSMPAASNGSQA
EDEGSDASAGASWPRRSRRRETFVDSVRRETVQQEDCKDMSPVSPKGSSS
EGSDGDDDDGQEQGHGRDWAKRWALTCSAVVLAPVVLVCILMGVLLAWPH
MKLAAGSALSGLRGLAVNSPEKCFLLPSERGTAACKEGAEITDCPSQGVC
GAGRLLTCNLPFTTTEDSSDCILTAEVEEEAQAVVEALRTLTIEQLCKGN
GLIMPSPKASVTTSFITLTDAAIAQKRGPLSFLAGMQPGNVAGLIELDGK
AATEFGGGEGGSERTARLSKIMYDEVMLTPGWRCKARLAAGSWVLAYWPY
CLAVYVLVLVVGCLDFRRWKSYRTRVQVCTIRDKCYQVLLHHATTDDALQ
VSHIQSSLGDRRGARGEGSLTTIPQEDVIELWPLVEKEVEKDTRIRRNFM
NMRGQRNVACWKWVGPAGTKFESIGDLPPGPAPRLWLLRWLNQPRPTP*
back to top

mRNA from alignment at P-littoralis_Contig165:103296..116368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig165.32.1 ID=mRNA_P-littoralis_Contig165.32.1|Name=mRNA_P-littoralis_Contig165.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=13073bp|location=Sequence derived from alignment at P-littoralis_Contig165:103296..116368+ (Pylaiella littoralis U1_48)
CAGCAGTACGAGAAATATGACGAGAACCATGCCCACGGCCAAGCCTCGTG ACGAAGCGTCGACATCACCAGCTGAAAAGAGACGGTATGTGAATTCAAAC TTCGAAGTACGATATGTTTTGCACATCAGACAGCAGTACGTATTATACTT CGAAGTAGCACTTTTTGCGACCACGGGCTAGATTTTGGCGATGAGCTCAT GTGTTGTTGTTGTTTGTTGTTGTTGTCTTCACATTAAAAACCATTCCGAT ATCTCCTCCGTACCTTCTAATGTCTGTACTCCACCGATCAGGTACGATTT CCGTGGTCACAGGCTGCTTGCCCCAGAAGAGGTATATAGTACTCGGGAGA TCCCCCAGTCCACCAAATAAAGGCACGACAAGGAGACTCCGGCAAAAACA AAAACGGACCCCGATAAATCACACGACGCTGTACAAAAATAGAACAAGAT ACAAGAAAACAAGAAAAGGGAGCCTGGTCCAGAGCCAAGCCACAAAATGA AATAAAAAGAAATTAAAAGCCAAAAATAAAAATAAAAGTCACAGAGGAGT GACAAAAAAGACAAAAAGACACCGAATTCAGTTGCCAAGGTGTCGATAGG ATGGACATCGGGCGTGCTACTCTCTTCACCGGCCCAGTGACAGTTTCAGG CAGCGCAAGTACGCAGGCGTGCAGGGGGCAAAAAGGCAGAAGGGCACAAA AAAACAGAGAACACAAAAAGGAAACTTCGAAGGACGTGGTAGCTCAGTCC ACGGTAACTCAACAAACAGGGGGGGGCGCACTGATGCAGTGAGGAAACGG ATGGGAAGGGTTAGTGCTATCACAGCAGTGTCAATCAATCTGGTGCATAT GCCGTGCTACTCTTTCCATCAATTCCCTCTTGCTCTCCTCTGCCGCCGTC GTCTCATCCTTTCGGGTCTTTCTACGCTTGCTTCCTCGAGCTTCCCCCTC CCCCTTCTCCTCCTCCTCCTCCTCGGTTTTCTCCTTGCTTGTTGTGCTGA GTTCTCTCTCCGTTCGCTTTCCTGCACGTTTCCTGCTTGCCTCCTTCTCT TCCTTGTGCCAAGCGGTCATAAACCGCGCAGCCCCCTTCACCACCCCCGC GTACCACGGCACTCCGTTCTTCTCCTTCGCGGCCGTGGTCCACAGGGCAG TGTCGATCCCGAACGTGAGGCGCCTGTCGCCCGTCGAACCGTCTGTGGCT CCGAAAGTTTTGAAATCGTCCTCCAGCGATTTCAGCCAATTTTGCGCCGG CCGGCCTCTGCCTGGGTCCTCACCCCCCACGAGTTTCCCAAACATCAGTC GCTTCGGGAGCCGCCCATGGCCTTGTTTTGCCAGGGCTCCCGCGAACAGA AGTCGCCTTTGCCGGATGATCGCCTCAACACATTGGCTCCCGGTCTTCTC GAGCGCTTTGGCGGATGACAGCTGTTGGTAGGTGCCTTGTACGCGGCGGT ATCCGATTACTCGCAGTAGGAGCCGGTGATGCATTGTCCGCAGCAACGCG TAGTGGTCGGCGCGTGGTACCCAGGTCATACACCCATAGAGCAACGCCTC TATCGCCTCCGCTTCAGTAGTCGGACCTTGAGTCTCCACGGTGCTGACTG CCGGTCGAAGAGTTCACGGGAGAACTTCTTGAGGCAGCCCCACGCGGCTC GGCTTCGGCGGTTGATCTCGTGCGTGAGTTCTCCATCCGCGGTTACAAGG CCGCCCAAATACCGAAACTCGATCACTTGTGCGTACTTCTGACCCGCTGC TACGATGGAAAGTTTGGGCGGAGGAGAAGGTATACTGTAGGCTCCCGCGG TTTTCGCGATTTCTCCGGCACTCGCATCAGCATCGTCTCCGTCTTCTTCT CTGAGACGGTCAAGCCAAAGGCGGCAAACACCTGTGAGTACGTTTCTTCA TCGATGAACTGCCGCTTGGCCGCTGTCTGTCACTACGACTTCGTACTTGT ACTGCCATAGAAATAGAGAGTGAATTGAATTCAGGTACAGCATCATTTGA AGTACACATGATACTTCGGTGTGTACTGCTGTGTACAAAGTTGCTGTACC GTAATCATTTAGGGGATCCGTAATCATTTAGGGGTGGCGGCGTCGCTATT TTACGCCCAGCCGCCGCGCGTCTCTATATCTACACGTGTGTGATACGAGC CGGTGGTGGCATCCCTGGCATCCTGTCTACTGCTCTCTTGATTGTATTCA AAAACATAAAGCAGTACTGCTGTACGTAGTACAGAGTACTTCGGGGAGTA GTATAGGACTAAAGACGAAAGCTTTACAGCAGTATCGTGTCGCAAAAGTA TACAATGCCGTCGTGTACTTACTTGTGTTATTATTCCACCCACCTTCTGC GGTGCTTCTGTTTCTCGCAGCTGTTCATCGCAAGAACGGGGTTCTAACAG TCCCTTATCCTCTTCGACTTTTCAGACCACCCGGGAATTAAATGCAAGTT GCTTGCAGGCCTCTTCGACACACGCCTGATTATTCTTTGTCTCCAATTTA TCCCATGATCATACGAATCTGAATCTACAATCGCAGGACTCTGCCAGAGG TAGTCGCTGTCATCAGTAAAGTAGCGTCTAGGATCCAAGTCCTAGCGACA CAAAGATAAGATTCGCCGCCTCTTATTTGTGAAACGAGCCCTCTTTCAAA CTGAGAGCTAGGAGGCGTATTTCGGATGCTTCTGTAGCAACCTGCTTCAA GCAACCGCGTTTTTTAACGCTTCCAGTATACAGCACCCGAAAAAGCGGAG CATACATGTATACCTGTGACCACTATTTCAGCACAACGCCCTCCTCACGC CCTACCATCGCCGTGAGTAATTGGAAAACCGGTGGCACTCACGTCTGCCC TGATTTTTCGCGTGCTGTGCGCTGGAAGCGTTCAAAAATACGGCTGTTTT TGGAGCAGCAACCAAAGTACGCCTCGTAGCTCACAGGAATCGATGAAGGA GGGCTCCTTCCAAAAACATACGGCGAATCTTTACTACTGTGGTATGCCGC AAGGACTTGGATCCTAGACACTAGTTGTTGATCACAGCGATTGCCTCTGG GAGAATTCTGTGATGATAGATCTGTATTGTACTAAGATAGACTTTGGAAA CCCAGAATAATCAGGCGTTTGTCGATAGGCTGCAAACAACTTGCACCCCA CGACCGGGTGTCTTAAGTCGAATGTGTTTGTGTACGTTTACGCACCATAA ACTACAAATGAGAGGTATGTACATACGGTACTTGTGGACTTGTGGTCAAT ACCGACACAGATATCGTACGATATTTCGATAGGATATTCGACACGATACA TCGAAACTCTCGATACATTACTGCTGTTACTGAAGTCTAAGTCCAACCGT AACATATCATTAGCCGAAGCCATTTCTGTGTGAGGAACTCGACGCATCCC ACCGAGCCCCGTCTCAGTCGTTTCACTTCTCCGAAGCATGTACGAACTGC TGTACAGCAGCAGCACTTCGGGTGTACATGGCTGGCGCAGCAAGACTCGT GGCGTCCAGTGTCCCGCAGCGAAGAAGCGAAGAAACGCGGTTGTACTGCT GCAAACCAACCACCAACGCTGACAGTCCCGCCTGTGTACTGTATTGCTAT TTCCGTGAGTGAGGAGACTCATTTAGATTTTCCCCTCTGTCAACAGCAGT ATCACGCGTATCATACTTTTTAAAGGTGCGGCTCTCGCTGCCGAGTGCTG ACATAGCAATCGCTGGTCGCCGTTTATCCGCGTTCACAAGCAGTAGGTTG GCGGCAGGCAGAGCCAAAGCCAGGGAAAGCAGCGTCAACAAGTCAAGCCT CAAAAGGTAATGTTCTTTATCTGATTCTACGGTGGCGGGTACCTCTTCGC GTACTGTCCCGATAACACTCTCAATTTACATAGACATGCACAGCTGGCAA GCTCAGCGGTATGCTGTGGTGCGCGTTCACCTACAGCAGCAAAGCCAGTA GGGCAAGGCCATTGTGGAGATTTATTTGTAGATGACATCAACATATACGT AGTGTACGCAAGTATTGCGCCGAGCAGGGCAGAGACCCTGTGGGGCGCCA ACTGATGTAGAAATGATCCGTGTGCAGCAGTATGGTATGAACAAACGCTC CATCCCGCTGCCGTACTCGAATCTGTGTGAGTTTGTACTTTAATCATGTG GTTTTTCTACAGTGTAACATTTTCATAATGCCTCCTAGAGACGAGTGCAA AAGCCCAGAGCAGAGAGAGGAAGTGCAGATAAGTGTTGTTGTTTATTGTG TTTAGTGCTGTGTACAGGTGTCGGGTAGAACCTTGAGATGTGCAGTATAT GCATGCTTACGCGCACCGCGCACCATGTACAGTACAAACACGCTGGAATG GGTTCTGGTTGTATCAGTCTGAGGCAAAGTACCATGAGCCAAGCATTTCT CGCTTAAGGTCACATACATGAGCGAGTGCCGTGGTTTGCCTACAGCAGTG GTCAAGTGATTTCCGACTGCGGCCGACAGCTACTTCCCCGCGCAGCAGGG TTGGGGATGACGGTTCTTTTCTTGACACCTCGCTCGTATTCTATTCTGTT GCGTTTTGCCGTCGCCAGGAAATCTTCCGGTGCTGAGGGACCAACGCCTC CGACGAAGGTAATGATCTGATAAATGATATTGGTAGTATTTGTTGAAAGT CTAGTATGACGTGACACGATGCGTGTCGCAAGTATGGCACACAAAGTTCG TTACTCGCATCGATATCCCTTCCATCCGTGGTTGGAAGCCCCCTGTTGCA TTGGTTTTCACCGGGCTAGCCGATTTCTGTCAAGCGACTGAATCGAAGGT CTAGAGCTACAGGTACAGCAGCACCAGTGTTTATTCTTTGAGTTATAATT TCAGCTTTGAAGGAAGGAATAGGATGTTGGCGAACCTACCGGCAGGCTTA TAAGCGTCAAGATGTCAAGCGAGTTACCGGCACGGGTTTTAGAGTGCGTT GTGACGACGCTATGCATACGGCAGGCGCGAGGGCCCCAGTAGACGAGCTG ATACTTCTGTGGTCAGCTCTTGTTTTGAGCGTCAGTTTTCGTTTGCCTCA CTCGAAACGCGAGCAGCAGGTAACCCGCGCAGCTGCAAGTCTCCATGTCT GTATTCAAAGAACAATGCTTGTACGTGACTCGCCAAGTGATGGTGTGTTG GAGTATTTCCCATTTGAGACACCTGCGATGCATTTTTTTTTGTCCCTGCG GTGCCCCGGGTGGTGTTGAGCGCCCTCCTTCATATCTTTTGCGTGACTAT CCATTCGTGTTCCGGTGTGTGTTTGACATGTGTTTGTGATCCTCCCCCCA CCACCAGCCTCGGAAGCAGGCGAATCCAGCCACAGCCACGAAAGAGGAGG CCCGACGGGCGAGCAGGAAACTGGCCGAGATGAGCGCCAAACGTAGGAAA CTGGCCGGGGAAAGTGCCACAAGAAGCATTCCCAACGGAGCAGGAGCACG TGACGGCGGATCATCGGACGAAGGCAGCGAAGAGGAAGATGGCATGGACA CATCCGGCGTGGACACGCCTCCTACGCTAGTGGAGCCTTCACCGAACCGT GCAGCTCAACCTAGCCCTGCTGCTGTCACCCTGTCTTCCCGCTCCCGCCT CGGAGTGTCTGACCAGACTCAGCCAGCCCCACCCATGCCTGAAACGCGCG CCCCGGGTCGATGGCTCTCCGCGACGAGTACGAGTCGACCCGCTGTAGGC GGTGGCGGTAGTCCGCCGAGTCCGTTTCCTCCGCAAGGCGCGAGGGGCGC GAGGCAAGTAAGTGGTCGAGGGGAAAATCAAGAGGCTGGTGCCTCCCGCC GCGGGTCTAGCTTTCTCCAGCATGCCAACACGGAAAGCAAGAACACGAAT GGTTCTATGCCCGCGGCCTCCAACGGTTCACAAGCCGAGGATGAAGGTTC AGATGCTTCTGCGGGGGCGTCTTGGCCTAGACGATCTCGTAGGCGGGAGA CTTTTGTGGATTCTGTGCGAAGGGAAACGGTACAGCAAGAAGACTGCAAG GATATGTCACCTGTATCACCAAAAGGCTCATCCTCTGAAGGCTCGGACGG TGATGATGATGATGGCCAAGAGCAAGGCCATGGGCGAGACTGGGCAAAGA GATGGGCTTTAACCTGGTAAGCGGGAGGAAGCGGTCGGGGTAGAGGGCAT TTCGCGTGTCGTTAGCGTAGAAATCAAGCGCCGAGCTGCCCTTGCACACC GGTGCTCCCGATCCAGATTCAATTGGTCTGTCAAGTACAGTATAAAGATC ATCAAATGTTCTCGTTTTGCAGTACTGTACAATAGCAGACGTCTGTGGTA TGAACTCGAAGTGACCCCAGTTCCCTCGTGCGGCTCTTGGTTTGTCGCTC TTTTACCCCCTGTCATTTTCCTTGCACTTGCACTTGGCCTTGACAGTTCG GCCGTGGTGCTGGCTCCGGTCGTTTTGGTGTGCATTTTGATGGGCGTGCT ACTGGCGTGGCCCCACATGAAGCTTGCGGCAGGAAGCGCACTGAGCGGCC TTCGCGGGCTGGCCGTCAATAGCCCGGAGAAATGCTTCCTCCTCCCGAGG TAGGGTGGACAGGCTTGACAGAAGCGCTGCAAGTATCACTTTACAGCAGT ACTGATAGTTCGTCGTTCGTAGTGCTAACTCTGCTGTGCTTTGCGCGCGA GCTGCATACGGCGATGGGGGACCATGGACGGTGAAAGTGGCGCCTCGGTC GTTGGAAATGTGTTTGGTCAAACAACACAAAGAGCAAAGTTGCACTACCG GAAGGATTCTGATCATGTTGGCCCAACCTTGAACGGTTCAACAGCATGCG TTGCTGTTCCACCACGAAAGGCGACACTGACTGAAAGGCCCGGGTGACGG CCGAGTATTTTTGCCTCCAAAGGGCGAAAGAAAGACCAGTTAACTAGTGG AGACGTTTCGTTTCGAGGGGTGAAGATGCGGTGTTTGTTCCGAAGGCGGC TGCAGCTTCGAAAAACTTGGTTGAAAGACAAGTGAAAGTTTCTGCAGTCC TCTGCGTGCGGGCTTTTGTCGCCCCGCATATTCTCGTTTAACCTCGTGCC GATTGCCGCTCACAGAGGTGTGACCCTGGGGTTCTTTGGCGGCTTCTCAC AACAATTACACCCTTCCCTTCCTTCCTGCTCGTGCGGCGTTATGATATGC ATCTCTTGTCGGATCTCAGCGAGCGTGGCACTGCGGCCTGTAAGGAAGGC GCGGAGATTACGGATTGCCCCAGCCAAGGCGTGTGCGGCGCGGGTCGCCT CCTGACCTGTAACCTCCCGTTCACGACGACGGAAGACAGCTCGGACTGCA TCCTCACCGCGGAAGTCGAGGAAGAGGCCCAAGCTGTTGTAGAGGCGTTG AGGTGAGCGCCGCCATACTTCAACAACGATTTTGTGACCGCTAGACGAGA AAGCCCAGGCGTATGCCCCGTTATGCCGGATCCATGGGTTGTGCCTGTTT ACAAAGGGGCTGTTTACCGATCACACGGTGGCCCCGTACCGTGCCGCCGG ATTGGTTCTCACGCATTGGTATGTCGATCAACCTTTCTTTCATGTTACCC ATACGATGCCGCGGCTGAGCGCTGATGCCCGCTGCCTTTGGTTGTCAAAC CCGCCTTGTGCATCATATTTTATCGTCGTATCACCATATCAAACGCCGCG CTTTTTTTCGACGGGGCTATCGTATGTGGGTGCTTTGTCTTCAGAACACT CACGATCGAGCAGCTGTGCAAGGGAAACGGCCTCATCATGCCTAGCCCTA AGGCGTCTGTCACCACGAGCTTCATCACGCTCACGGACGCTGCGATCGCC CAGAAGAGGTGGGGCCAACGCTTGAAGTAGCCGCTAACGCTCCCTTCTTG TCTTTGTGTGGAGGTGGCGACCTGGTCGCGTCTTGAGTGGTTGCGTTGTA CGAAGGGTTGTGGTCGAATGACCGCAGCATGGCTTCAGCATGACCACTGC ATTTGCACTTTCATACCTCCCGTGTATTGACACGTCAACGCACGCTAGGA ACGTTCTTTGATTGTCCCGACGCCGCATATGATCCGAGCTTCACATTGCT GTGGAATCAGCACAATCATCGAAATCCAGGACACCACTTGCTACTGTTCT GCCCCATTTTCATTTCGCTGACGTGGTATGTCATGGCATGGCAGAGGACC GCTTTCCTTCCTGGCCGGAATGCAGCCCGGAAACGTGGCTGGTCTGATAG AACTAGACGGGAAAGCTGCAACAGAATTTGGAGGAGGGGAAGGTGGATCG GAGAGGACCGCTCGACTGTCGAAAATCATGTACGATGAGGTTATGCTGAC GCCGGGATGGCGATGCAAAGCGCGTCTCGCCGCTGGGAGTTGGGTTCTGG CGTACTGGCCGGTGAGGAAATGTCGTCTTATCTTGGTTCCAATGCTTTCA TTCGAGGCTTGTGAGGTTACAGCTTAAAGTGGTGGTAGTTGCGCACGTCG TGCCCGTGTGTTTGGTGCTTCTTTCGGGCGCCGTCAGCACACGTCAATTA GATGCGTTCCTCGAAATCAAAACAGCGTTCGGCCTGGCTCGTTCTTGCAT GTCCGGAAGGCACGGATGATCAACCAGGCGTAACGCAGCTTTTTCCTTGG TCACACCAGTTTTCAAGCTGTTTCCAGGCCTCGGCCGGCGTGGTGATCTA AACGCCGATTTCTACCCTTTCTCATTGCAAGATATTGAGATGAGACAATG ACGGAGTTTAGAATCTGAAGAGCACAAGCGATGATGGAGCTATTGGTGCA GTCTTTTGAAAGTGTCGTTGAGAAGAGATGTTGGTGGGTTGCAAGGACAA CCATGGGAATGAAAACACTCAAGCTGCCCGTTCATTTGAGGCCGGGCATC GGCTAAGGTTGTTGATGAGATCCTACCGTAGGAATCATCGTTAGAGATTG ATTCCCTCGTACCCCAAAGGGCTGTTTGGATGGCGCTCCAGGTTTCTCAT GCTGCTGTAGTTGTTTTTCTACGAGTAAATGCACGTGCACACTACCGTGC CGACCGAAAAAGTAGAACATGATACCCCCCCCGCCTCTATCAATCATTCC TGGATCGCGGATTTGCTGATGAAGAACCTCCCTCTCGCCCCCCCTCCGCC TCCCCAGTATTGTCTGGCTGTGTATGTTTTGGTTTTGGTCGTAGGTTGCC TGGATTTTCGAAGGTGGAAGAGCTACAGGACGCGCGTGCAGGTATGGCAC AGTTTTATGAATAACAGCTGGTCCGGCGGCTGGCGGAAGGACGCTCGCGA GTACTTGTACGTGTACTCCCTTTCGTGATTTTGTGACAGTCATACTGGTT TGGGGCTAGTTGGTTATCGAAGACGACGCGAGTGTATATGACGAGTCTTT CAGATTAGTAGTCTAGGACGAGGGTTTGTGAAATCCCAAGACAAGGATTG TGTTTGCGAAAACACTAATCTCGGTAAGCGCTTCAACAAAAGGTGTTTCT GGCGACTTTCATGAGCCTGCCTGCGAATTCATCCGGCTCCTGTCTGTCAA GTACTTGAGTATGCAACACTGGAGACGACTCACTTGCATCGATGACCCAA CCTTGAACGAAAAAGTGCTCCGTGATGTGTTTATCACGTATCAGGTGTGC ACCATACGCGACAAATGCTACCAAGTGCTGCTGCACCATGCCACCACCGA CGATGCATTGCAGGTGTGCGCTTTGATGTAGCATTTTGGAGCAGCAGTAA CCACAACGGAATCTTGTATTCATCGACGTTACGGAACAATATCATGTAGC GTTTCGGATGCCTGAATGTAATGCATCCACGTATCACGTTCTTATCAAAG TGAAAAGCATACAGTCTTAAACAGCGCTGCTACGACTGCAACCCGTATTG CGGTAGAGAGGGCCTCGCACGCCCACGGCCTGTCCAGAGCCCACGTGGAT TGCAGCTGAACACACGGCAATTTCCTGCCGCACAAGCTAGGTTTCATGAA CTGCACCAAAGCGGACACCACTTAGGGGTCACGAGTTGTATCAATTACTC TATCCATGCTGTAGACGGTCACGCCGCAGTGGCTCCACGAGCGCGTGTCA TGTAGCTGACTCAACGCATTACGCAAATTGTGCCAAACCGTCGCAGGTAT CGCACATCCAAAGCTCCTTGGGTGATAGGCGGGGGGCCAGAGGAGAAGGA AGCCTGACTACCATACCACAAGAGGACGTAATCGAGCTCTGGCCGTTGGT GAGTGTGCCGTACTCTTTGTCGAGAAATGTACTGCCCATGACGGAAGTAC CTGGGACTTTTCTTGGCGAGAAAATGTAAAGCTTGGAGAGGTCGGTCGAG CCGTATTATGCCATCCGTCGGTGTCTGCTATAAGCCACCATACCGCACTA AATGCTGCACAAGCAGGAGTTTGGCTTTGCTTCGTGTACATCCGAGGGCA CACATCCACGATTTGTAAATCTGACCGGGGGCTTGCTGTTCAACAGTGCG TTTACGCGTTTACGCAATAAGCATCGAATGCATACAACCCTCTTGGGTGT GGCGTGGCTGACCCCAATGCTCCTGGGACGGCAGCAACTGTTTATCAAGA ATTTTGAAGGAGTACCGCACAAGCGTGGCGTAGCTCAGCCTTGTGATTGT CTTCGTCCTCAAGTGTAACGCTTGTTTCATTCTGTGTGTTGTGGGTGCAC GAAGGTCGAGAAAGAAGTGGAAAAAGACACCAGAATCCGGAGGAACTTCA TGAACATGCGTGGCCAACGCAACGTGGCCTGCTGGAAGTGGGTGGGGCCA GCCGGCACCAAGTTCGAGAGCATCGGGGTGAGTTAACGCATCTTCTGCGC GAGACAAAACCAAGCGCATGCCTGCTCTCTTCACGCATTGATCGTTGCGC TCTTTGGCTTCGCAAAAGTTTTTCATCGAACGGTATAATATTATGGATGG TATGTTTTCCGCGACTTCCAATCTGTTTCGATCTGGTGGTGTGGTAAGAG ACCGAGCCCCCTAAAGACGGACGCTTCATGACGATTGGAGGGGTTCAGTT TTGTTTGGAATGTCACACGGATCGACCTGTTCAGGGTTCAAAGCTTTGCA CCTGAGCGGTTTAGGAGCGTGGCGTGTTGTCAACGCTTTCGCGCGCCACT ACAAAACAACCTCTTTTCTTAGCCACCCCTGAGGCGGAGCACATCCATCC GCCTACATTTGTCGGTGTGCTGTGTTGCGTGCTATCACATACGTTCGTCG CAGACCCCTGCTTTCTGGAGGTGCGGGAGGCATCCGCCCAGTGCACACTG AATATGTATGTTCACCATCAGTACTTGCATTTAGTTCAATTACCTGTGGG ATCGGGGTCGTGCGCACCAAATGGGCCGCCAGCAAATCATCACACGTGCT TGCAACGGCAGGCGGCAAGACAACTGCGCGTCTTCGCTCACTCTTTTTCC CTACCTACCACGTGCAATTTGTATGCCCTCGAATTCCAGGACTTGCCCCC GGGACCCGCCCCTCGCCTTTGGCTTCTCCGGTGGCTCAATCAACCGAGGC CGACACCGTAACGCGAACGCCCTCGACGTGGTTGCTGCATCATGTGATCG TTACGTGTTTCATGTTGAACTCAAGTGCACGGAGTGCGTCATGGCAGTCT TTTTGCGTGTCTTGCGGGTACGGCTGATCCACAGTAGCATTCCTTTCTCC CATCGTCCGTGCAACAAGCTGTGTCAGGTTGCTAGCGCCCATCTACTGTA TGCAGTCGTTGCCTTTTGGTTTGACCTGCGTTAAAGTTCGGAGCTTCCTT AGTGTTGCCTGCGTACGCAATCTAATCTACCGTAAAGTCTCACTTCAGGC CTTGGCCAAACAATGCCGTAGATACGTCGGGATTCACAACATGGTGGTAT ATCTGCGGTCTTGCACGATTAACGCGTATCGTGGCAACGACTTGGCAGCC CTCTCGGCGTATGGAGGCGATGATGAGACGCTCCAACTTTTCTTCATCGT CCTCTGCCTGGACAGAAAAACAAGAACCGACTCCGTATGTTTCGACCGGA GGAGCATCGCCGCTTGCAACGCAGCAGCGTTATACCTTCAAAGGGCGTGG TGAGGGTAATGTTTGGCTCACCACCAAACGAGAATTACGTCGGAAAGCCG CCAATCAGCATTTTTGGACCATGTTGGTGTCATTGGTGTCATCTCTTTCA TACCTGGTAGGTGCCGAAGACAGCGAAAGGGCCAGCCGCTCGACACAATT ATTTCGCCTACAAATTATTCGGGCTGCGGGTAGCAAGCTGGGAGGGTACA TGTCGGGAAAGAATGGACGTTCTGTGGTGGGGGTTACTGTGGGGAAAGTG AACGATTGGCCTGATGTTGTCCCAGCGGCTGCTGGGTTACGGTAGTGGGG TAGCAAGGGTTACATGGCTGGGGCTATATGACTTCTGAGAGAGTCGCCTT AACTGCGCCCGCTTACGCGCAAGTTGGCCCGAGGTGAAGCACACCTGGTT CACTGTAGGGGCCATCGTTCGACAAGTGAACATCAAAGTCATTCGTAGCA GCGGTATTGTAAGCGTTCTTACGCAGGCAGCTCTGATGGGTGTCACATCG CTTTGCGCTCAATGCGTACCGTCGTCTCCGATGACTTTACTAGACATATG CCCCGCCTAGATTTTCGGGAACCGGGTACCCGTCTGGGCTCGAGGAGGTG GTACCGACCGGGTACCCGGGCAATTGGGAAGTGGAATACGGTGCCCCCTC CCCCCCCCGGAGTAGTGAAATACGGTGCCCCCCAGAAATATGGTTGCGCC GTGAGTAATTTTCATAGGGGTACCCCGTTACCAAAGGGGCACCGTATTGC GATTTCAATTACCTGGGTAGCGACCGGGAAGCGACCGGAAAGTGCCGGTA CCGGGTACCCGGGAAATTTTCAGACTGGGCATAGTCTAGAAGTTACGTAA TGCATGTTTCATACTCGAAGTATTATGTGTGTTGAACTACTAGAATGTAC CAGTTAGGGAGAGGTGCGCAAGCGTATTGATTGAATTCCACAATATCGCC GAGTAATATAAATGTTACATGCTGGCGTTGAAGTCCAACCGCCCTACGGG AGGGCCACGATAATATTCGCAAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig165:103296..116368+

>mRNA_P-littoralis_Contig165.32.1 ID=mRNA_P-littoralis_Contig165.32.1|Name=mRNA_P-littoralis_Contig165.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2097bp|location=Sequence derived from alignment at P-littoralis_Contig165:103296..116368+ (Pylaiella littoralis U1_48)
ATGACGAGAACCATGCCCACGGCCAAGCCTCGTGACGAAGCGTCGACATC
ACCAGCTGAAAAGAGACGTAGGTTGGCGGCAGGCAGAGCCAAAGCCAGGG
AAAGCAGCGTCAACAAGTCAAGCCTCAAAAGGAAATCTTCCGGTGCTGAG
GGACCAACGCCTCCGACGAAGCCTCGGAAGCAGGCGAATCCAGCCACAGC
CACGAAAGAGGAGGCCCGACGGGCGAGCAGGAAACTGGCCGAGATGAGCG
CCAAACGTAGGAAACTGGCCGGGGAAAGTGCCACAAGAAGCATTCCCAAC
GGAGCAGGAGCACGTGACGGCGGATCATCGGACGAAGGCAGCGAAGAGGA
AGATGGCATGGACACATCCGGCGTGGACACGCCTCCTACGCTAGTGGAGC
CTTCACCGAACCGTGCAGCTCAACCTAGCCCTGCTGCTGTCACCCTGTCT
TCCCGCTCCCGCCTCGGAGTGTCTGACCAGACTCAGCCAGCCCCACCCAT
GCCTGAAACGCGCGCCCCGGGTCGATGGCTCTCCGCGACGAGTACGAGTC
GACCCGCTGTAGGCGGTGGCGGTAGTCCGCCGAGTCCGTTTCCTCCGCAA
GGCGCGAGGGGCGCGAGGCAAGTAAGTGGTCGAGGGGAAAATCAAGAGGC
TGGTGCCTCCCGCCGCGGGTCTAGCTTTCTCCAGCATGCCAACACGGAAA
GCAAGAACACGAATGGTTCTATGCCCGCGGCCTCCAACGGTTCACAAGCC
GAGGATGAAGGTTCAGATGCTTCTGCGGGGGCGTCTTGGCCTAGACGATC
TCGTAGGCGGGAGACTTTTGTGGATTCTGTGCGAAGGGAAACGGTACAGC
AAGAAGACTGCAAGGATATGTCACCTGTATCACCAAAAGGCTCATCCTCT
GAAGGCTCGGACGGTGATGATGATGATGGCCAAGAGCAAGGCCATGGGCG
AGACTGGGCAAAGAGATGGGCTTTAACCTGTTCGGCCGTGGTGCTGGCTC
CGGTCGTTTTGGTGTGCATTTTGATGGGCGTGCTACTGGCGTGGCCCCAC
ATGAAGCTTGCGGCAGGAAGCGCACTGAGCGGCCTTCGCGGGCTGGCCGT
CAATAGCCCGGAGAAATGCTTCCTCCTCCCGAGCGAGCGTGGCACTGCGG
CCTGTAAGGAAGGCGCGGAGATTACGGATTGCCCCAGCCAAGGCGTGTGC
GGCGCGGGTCGCCTCCTGACCTGTAACCTCCCGTTCACGACGACGGAAGA
CAGCTCGGACTGCATCCTCACCGCGGAAGTCGAGGAAGAGGCCCAAGCTG
TTGTAGAGGCGTTGAGAACACTCACGATCGAGCAGCTGTGCAAGGGAAAC
GGCCTCATCATGCCTAGCCCTAAGGCGTCTGTCACCACGAGCTTCATCAC
GCTCACGGACGCTGCGATCGCCCAGAAGAGAGGACCGCTTTCCTTCCTGG
CCGGAATGCAGCCCGGAAACGTGGCTGGTCTGATAGAACTAGACGGGAAA
GCTGCAACAGAATTTGGAGGAGGGGAAGGTGGATCGGAGAGGACCGCTCG
ACTGTCGAAAATCATGTACGATGAGGTTATGCTGACGCCGGGATGGCGAT
GCAAAGCGCGTCTCGCCGCTGGGAGTTGGGTTCTGGCGTACTGGCCGTAT
TGTCTGGCTGTGTATGTTTTGGTTTTGGTCGTAGGTTGCCTGGATTTTCG
AAGGTGGAAGAGCTACAGGACGCGCGTGCAGGTGTGCACCATACGCGACA
AATGCTACCAAGTGCTGCTGCACCATGCCACCACCGACGATGCATTGCAG
GTATCGCACATCCAAAGCTCCTTGGGTGATAGGCGGGGGGCCAGAGGAGA
AGGAAGCCTGACTACCATACCACAAGAGGACGTAATCGAGCTCTGGCCGT
TGGTCGAGAAAGAAGTGGAAAAAGACACCAGAATCCGGAGGAACTTCATG
AACATGCGTGGCCAACGCAACGTGGCCTGCTGGAAGTGGGTGGGGCCAGC
CGGCACCAAGTTCGAGAGCATCGGGGACTTGCCCCCGGGACCCGCCCCTC
GCCTTTGGCTTCTCCGGTGGCTCAATCAACCGAGGCCGACACCGTAA
back to top