mRNA_P-littoralis_Contig165.32.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig165.32.1 vs. uniprot
Match: D7G5B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B7_ECTSI) HSP 1 Score: 427 bits (1099), Expect = 2.130e-131 Identity = 228/402 (56.72%), Postives = 275/402 (68.41%), Query Frame = 2
Query: 941 DGQEQGHGRDWAKRWALTCSAVV-LAPVVLVCILMGVLLAWPHMKLAAGSALSGLRGLAVNSP--EKCFLLPSERGTAACKEGAEITDCPSQGVCGAGRLLTCNLPFTTTEDSSDCILTAEVEEEAQAVVEALRTLTIEQLCKGNGLIMPSPKASVTTSFITLTDAAIAQKRGPLSFLAGMQPGNVAGLIELDGKAATEFGGGEGGSE--------RTARLSKIMYDEVMLTPGWRCKARLAAGSWVLAYWPYCLAVYVLVLVVGCLDFRRWKSYRTRVQVCTIRDKCYQVLLHHATTDDA-LQVSHIQSSLGDRRGARGEGSLTTIPQEDVIELWPLVEKEVEKDTRIRRNFMNMRGQRNVACWKWVGPAGTKFESIGDLPPGPAPRLWLLRWLNQPRPTP 2110
DG + R + W C+ VV LAPVV++ ++ G+L+AWPH+++AAG A RGL +P EKCFL P E+ CK G E DCP CGAGR+L CNLP+T +D + C+L AE E+EA+AVVEALRTLT E+LCKG GLIMP +AS SFITLTDAA AQ RGPLS LAGM PGNV GLIEL+G+ A FGGG+ G+E R ARLS+ +D VM T GWRCKARLAAGSW + YW YCLA+Y LV+ CLD RR SY VQVCTIRD CYQ LL HA+ D + +QVSHIQSS+ D R + TI Q + LWPLVE+EVE D RIRR + ++ G+R+VACWKWVGP GT+FE+IG L PG APRL LL + RP P
Sbjct: 285 DGDDARPRRGKSLEWTFKCAVVVVLAPVVVLLLVSGLLVAWPHVQVAAGGAWGAFRGLTAKTPSVEKCFLQPGEQEDIVCKSGTEAMDCPDHATCGAGRILHCNLPYTLRKDRAACVLVAEAEKEAKAVVEALRTLTAEELCKGKGLIMP--RASARGSFITLTDAATAQSRGPLSLLAGMPPGNVVGLIELEGEPAQVFGGGQDGAEGCAGSGMERVARLSESAHDAVMRTLGWRCKARLAAGSWFMTYWQYCLAMYCLVVGAVCLDLRRRNSYYRHVQVCTIRDLCYQTLLDHASKDSSPMQVSHIQSSVTDWTRQRVAKNRATI-QRHIAGLWPLVEREVEHDERIRRCYKSLAGKRSVACWKWVGPTGTRFETIGALNPGRAPRLLLLWCQERARPMP 683
BLAST of mRNA_P-littoralis_Contig165.32.1 vs. uniprot
Match: A0A6H5L750_9PHAE (MSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L750_9PHAE) HSP 1 Score: 419 bits (1078), Expect = 4.940e-128 Identity = 223/387 (57.62%), Postives = 268/387 (69.25%), Query Frame = 2
Query: 983 WALTCSAVVLAPVVLVCILMGVLLAWPHMKLAAGSALSGLRGLAVNSP--EKCFLLPSERGTAACKEGAEITDCPSQGVCGAGRLLTCNLPFTTTEDSSDCILTAEVEEEAQAVVEALRTLTIEQLCKGNGLIMPSPKASVTTSFITLTDAAIAQKRGPLSFLAGMQPGNVAGLIELDGKAATEFGGGEGGSE--------RTARLSKIMYDEVMLTPGWRCKARLAAGSWVLAYWPYCLAVYVLVLVVGCLDFRRWKSYRTRVQVCTIRDKCYQVLLHHATTDD-ALQVSHIQSSLGDRRGARGEGSLTTIPQEDVIELWPLVEKEVEKDTRIRRNFMNMRGQRNVACWKWVGPAGTKFESIGDLPPGPAPRLWLLRWLNQPRPTP 2110
WA C+ V++ ++LV G+L+AWP +++AAG A RGL +P EKCFL E+G CK G E TDCP+ CGAGR+L CNLP+T +D + C+L AE EEEA+AVVEALRTLT E+LCKG GLIMP +AS SFITLTDAA AQ RGPLS LAGM PGNV GLIEL+G+ A FGGG+ G+E R ARLS+ +D VM T GWRCKARLAAGSW + YW YCLA+Y LV+ CLD RR SY VQVCTIRD CYQ LL +A+ D A+QVSHIQSS+ D R + TI + + +LWPLVE+EVE D RIRR + ++ G+RNVACWKWVGP GT FE+IG L PG APRL LR + RP P
Sbjct: 339 WAFKCAVVMVMVLLLVS---GLLVAWPQVQVAAGGAWGAFRGLTAKTPPVEKCFLQLGEQGDVVCKSGTEATDCPAHATCGAGRILHCNLPYTLKKDRAACVLVAEAEEEAKAVVEALRTLTAEELCKGKGLIMP--RASSRGSFITLTDAATAQNRGPLSLLAGMPPGNVVGLIELEGEPAQVFGGGQDGAEDCAGSGMERVARLSESAHDAVMDTLGWRCKARLAAGSWFMTYWQYCLAMYCLVVGAVCLDLRRRNSYYRHVQVCTIRDVCYQTLLDNASKDSSAMQVSHIQSSVTDWTRQRVAKNRATIHRH-IADLWPLVEREVEHDERIRRCYKSLAGKRNVACWKWVGPTGTSFETIGALNPGRAPRLLFLRCQERERPMP 719 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig165.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig165.32.1 >prot_P-littoralis_Contig165.32.1 ID=prot_P-littoralis_Contig165.32.1|Name=mRNA_P-littoralis_Contig165.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=699bp MTRTMPTAKPRDEASTSPAEKRRRLAAGRAKARESSVNKSSLKRKSSGAEback to top mRNA from alignment at P-littoralis_Contig165:103296..116368+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig165.32.1 ID=mRNA_P-littoralis_Contig165.32.1|Name=mRNA_P-littoralis_Contig165.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=13073bp|location=Sequence derived from alignment at P-littoralis_Contig165:103296..116368+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig165:103296..116368+ >mRNA_P-littoralis_Contig165.32.1 ID=mRNA_P-littoralis_Contig165.32.1|Name=mRNA_P-littoralis_Contig165.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2097bp|location=Sequence derived from alignment at P-littoralis_Contig165:103296..116368+ (Pylaiella littoralis U1_48)back to top |