mRNA_P-littoralis_Contig1295.16.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 7.990e-21 Identity = 46/82 (56.10%), Postives = 57/82 (69.51%), Query Frame = 2
Query: 2 WHLYHPD-APALKPPS--PPNPLSRSEALRMFPIGFVVWKRFDDDTRLKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKLVR 238
WHLY P A A P S P PLSR++AL +FPIGF K L+GQVYD+ +PYWRVRY+DGNWE+L+R EL++L R
Sbjct: 1800 WHLYFPQLANASAPDSVKPRTPLSRAQALHVFPIGFTFQKELAGGILLQGQVYDYVSPYWRVRYTDGNWEELSRRELERLAR 1881
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.420e-20 Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 2
Query: 2 WHLYHPDAPALKPP---SPPNPLSRSEALRMFPIGFVVWKRFDDDTRLKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKL 232
WHLYHP PP P PLSR+EAL++FPI F + K D L+GQV+DF PYWRV YSD NWE+L R EL++L
Sbjct: 794 WHLYHPQQANDLPPVSVKPRAPLSRAEALKLFPIDFTLRKELDGGVNLQGQVFDFLQPYWRVGYSDQNWEELARRELERL 873
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 2.250e-9 Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 2
Query: 2 WHLYHPDAPALKPPSPPNP-----LSRSEALRMFPIGFVVWKRF-DDDTRLK---GQVYDFKAPYWRVRYSDGNWEDLTRTELQKLV 235
+ L++ + A +P PP SR +AL++FP+G V + F D D LK +D PYWRV Y DG+WE+LT++E+ K +
Sbjct: 1850 YELFYGENGAPRPAGPPTRGEREVASREQALQLFPVGTQVGREFADSDGHLKVFKATAFDCCDPYWRVEYPDGDWEELTKSEMDKGI 1936
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 1.050e-8 Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 2
Query: 2 WHLYHPDAPALKPPSPPNP-----LSRSEALRMFPIGFVVWKRF---DDDTRL-KGQVYDFKAPYWRVRYSDGNWEDLTRTELQ 226
W YH A +PP P +R AL+ FP+ V K DD+ L +G+V DF PYWRV +SDG+WE+ TR EL+
Sbjct: 1602 WEDYHGSDVAPRPPGAPTRGEREVATREAALQEFPLNTEVAKELRDKDDNIILSRGKVCDFYDPYWRVEFSDGDWEEFTRRELR 1685
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 1.260e-7 Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 2
Query: 41 PSPPNPLSRSE--------ALRMFPIGFVVWKRF-DDDTRL---KGQVYDFKAPYWRVRYSDGNWEDLTRTELQKLV 235
P PP LSR E AL+ FP+ V + D D + +G+V DF PYWRV++SD +WE+LTR EL++ V
Sbjct: 2157 PRPPGALSRGEHEVATREAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYWRVKFSDDDWEELTRRELRQGV 2233
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 3.090e-7 Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 2
Query: 59 LSRSEALRMFPIGFVVWKRFDDDTRLKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKLV 235
L R ++++ GF K F +L+GQV+ + YWRVRYS+ NWE+LTR EL++ +
Sbjct: 1068 LQRGLSVQVKMQGFTSQKDFGGGQKLQGQVFGHRDRYWRVRYSNQNWEELTRQELERCL 1126
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A836CCZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCZ7_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 9.260e-7 Identity = 23/65 (35.38%), Postives = 39/65 (60.00%), Query Frame = 2
Query: 59 LSRSEALRMFPIGFVVWKRF-----DDDTRLKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKLVR 238
+ R AL+++PIG + + T + G V +F +PYWR+RY DG WE +TRT+++ ++
Sbjct: 73 MRRESALQLYPIGTALVREHRTVVGGPITYVWGAVKNFVSPYWRIRYEDGEWEQMTRTQVKSAIQ 137
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A836CJM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJM4_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.140e-6 Identity = 25/63 (39.68%), Postives = 35/63 (55.56%), Query Frame = 2
Query: 62 SRSEALRMFPIGFVVWKRFDDDTRLK-----GQVYDFKAPYWRVRYSDGNWEDLTRTELQKLV 235
++ AL +FP G V + D + + G V + APYWRVRY DG WED T+ +LQ +
Sbjct: 108 TKEAALALFPRGTKVAREHRDSLKQRVKYVWGTVVGYLAPYWRVRYEDGEWEDFTKRQLQLAI 170
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5LDH3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDH3_9PHAE) HSP 1 Score: 53.9 bits (128), Expect = 9.180e-6 Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 2
Query: 134 LKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKLVR 238
L+GQVYD+ + WRVRY DGNWE+L+R EL++ R
Sbjct: 932 LQGQVYDYLSHCWRVRYIDGNWEELSRRELERPSR 966
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A835Z3Z6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Z6_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 3.330e-5 Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 2
Query: 62 SRSEALRMFPIGFVVWKRFDDDTR-----LKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKLV 235
++ AL +FP G V + + L G + + APYWRVRY DG+WED T+ +LQ +
Sbjct: 98 TKEAALALFPRGTKVVREERGALKQQVKYLWGTITGYLAPYWRVRYEDGDWEDFTKRQLQCAI 160 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1295.16.1 >prot_P-littoralis_Contig1295.16.1 ID=prot_P-littoralis_Contig1295.16.1|Name=mRNA_P-littoralis_Contig1295.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp MFPIGFVVWKRFDDDTRLKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKLback to top mRNA from alignment at P-littoralis_Contig1295:34697..35092- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1295.16.1 ID=mRNA_P-littoralis_Contig1295.16.1|Name=mRNA_P-littoralis_Contig1295.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig1295:34697..35092- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1295:34697..35092- >mRNA_P-littoralis_Contig1295.16.1 ID=mRNA_P-littoralis_Contig1295.16.1|Name=mRNA_P-littoralis_Contig1295.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig1295:34697..35092- (Pylaiella littoralis U1_48)back to top |