mRNA_P-littoralis_Contig1295.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1295.16.1
Unique NamemRNA_P-littoralis_Contig1295.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 7.990e-21
Identity = 46/82 (56.10%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    2 WHLYHPD-APALKPPS--PPNPLSRSEALRMFPIGFVVWKRFDDDTRLKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKLVR 238
            WHLY P  A A  P S  P  PLSR++AL +FPIGF   K       L+GQVYD+ +PYWRVRY+DGNWE+L+R EL++L R
Sbjct: 1800 WHLYFPQLANASAPDSVKPRTPLSRAQALHVFPIGFTFQKELAGGILLQGQVYDYVSPYWRVRYTDGNWEELSRRELERLAR 1881          
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.420e-20
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    2 WHLYHPDAPALKPP---SPPNPLSRSEALRMFPIGFVVWKRFDDDTRLKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKL 232
            WHLYHP      PP    P  PLSR+EAL++FPI F + K  D    L+GQV+DF  PYWRV YSD NWE+L R EL++L
Sbjct:  794 WHLYHPQQANDLPPVSVKPRAPLSRAEALKLFPIDFTLRKELDGGVNLQGQVFDFLQPYWRVGYSDQNWEELARRELERL 873          
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.250e-9
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 2
Query:    2 WHLYHPDAPALKPPSPPNP-----LSRSEALRMFPIGFVVWKRF-DDDTRLK---GQVYDFKAPYWRVRYSDGNWEDLTRTELQKLV 235
            + L++ +  A +P  PP        SR +AL++FP+G  V + F D D  LK      +D   PYWRV Y DG+WE+LT++E+ K +
Sbjct: 1850 YELFYGENGAPRPAGPPTRGEREVASREQALQLFPVGTQVGREFADSDGHLKVFKATAFDCCDPYWRVEYPDGDWEELTKSEMDKGI 1936          
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.050e-8
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 2
Query:    2 WHLYHPDAPALKPPSPPNP-----LSRSEALRMFPIGFVVWKRF---DDDTRL-KGQVYDFKAPYWRVRYSDGNWEDLTRTELQ 226
            W  YH    A +PP  P        +R  AL+ FP+   V K     DD+  L +G+V DF  PYWRV +SDG+WE+ TR EL+
Sbjct: 1602 WEDYHGSDVAPRPPGAPTRGEREVATREAALQEFPLNTEVAKELRDKDDNIILSRGKVCDFYDPYWRVEFSDGDWEEFTRRELR 1685          
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-7
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 2
Query:   41 PSPPNPLSRSE--------ALRMFPIGFVVWKRF-DDDTRL---KGQVYDFKAPYWRVRYSDGNWEDLTRTELQKLV 235
            P PP  LSR E        AL+ FP+   V +   D D  +   +G+V DF  PYWRV++SD +WE+LTR EL++ V
Sbjct: 2157 PRPPGALSRGEHEVATREAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYWRVKFSDDDWEELTRRELRQGV 2233          
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.090e-7
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 2
Query:   59 LSRSEALRMFPIGFVVWKRFDDDTRLKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKLV 235
            L R  ++++   GF   K F    +L+GQV+  +  YWRVRYS+ NWE+LTR EL++ +
Sbjct: 1068 LQRGLSVQVKMQGFTSQKDFGGGQKLQGQVFGHRDRYWRVRYSNQNWEELTRQELERCL 1126          
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A836CCZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCZ7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.260e-7
Identity = 23/65 (35.38%), Postives = 39/65 (60.00%), Query Frame = 2
Query:   59 LSRSEALRMFPIGFVVWKRF-----DDDTRLKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKLVR 238
            + R  AL+++PIG  + +          T + G V +F +PYWR+RY DG WE +TRT+++  ++
Sbjct:   73 MRRESALQLYPIGTALVREHRTVVGGPITYVWGAVKNFVSPYWRIRYEDGEWEQMTRTQVKSAIQ 137          
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A836CJM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJM4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.140e-6
Identity = 25/63 (39.68%), Postives = 35/63 (55.56%), Query Frame = 2
Query:   62 SRSEALRMFPIGFVVWKRFDDDTRLK-----GQVYDFKAPYWRVRYSDGNWEDLTRTELQKLV 235
            ++  AL +FP G  V +   D  + +     G V  + APYWRVRY DG WED T+ +LQ  +
Sbjct:  108 TKEAALALFPRGTKVAREHRDSLKQRVKYVWGTVVGYLAPYWRVRYEDGEWEDFTKRQLQLAI 170          
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A6H5LDH3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDH3_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 9.180e-6
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 2
Query:  134 LKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKLVR 238
            L+GQVYD+ +  WRVRY DGNWE+L+R EL++  R
Sbjct:  932 LQGQVYDYLSHCWRVRYIDGNWEELSRRELERPSR 966          
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Match: A0A835Z3Z6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Z6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.330e-5
Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 2
Query:   62 SRSEALRMFPIGFVVWKRFDDDTR-----LKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKLV 235
            ++  AL +FP G  V +      +     L G +  + APYWRVRY DG+WED T+ +LQ  +
Sbjct:   98 TKEAALALFPRGTKVVREERGALKQQVKYLWGTITGYLAPYWRVRYEDGDWEDFTKRQLQCAI 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1295.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KEH2_9PHAE7.990e-2156.10RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JMP6_9PHAE1.420e-2055.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAJ3_9PHAE2.250e-937.93RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KNP4_9PHAE1.050e-841.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3V4_9PHAE1.260e-742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBF4_9PHAE3.090e-742.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCZ7_9STRA9.260e-735.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJM4_9STRA1.140e-639.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5LDH3_9PHAE9.180e-660.00RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A835Z3Z6_9STRA3.330e-538.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1295contigP-littoralis_Contig1295:34697..35092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps5262
PFAMsPHD_2,RGS
Model size396
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9.13e-06
EggNOG OGs2ENP4@1|root,2SS24@2759|Eukaryota,2XDYK@2836|Bacillariophyta
DescriptionPHD zinc finger
Cds size159
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789579.1340177-UTR-P-littoralis_Contig1295:34696..348511680789579.1340177-UTR-P-littoralis_Contig1295:34696..34851Pylaiella littoralis U1_48UTRP-littoralis_Contig1295 34697..34851 -
1680789579.1636965-UTR-P-littoralis_Contig1295:35010..350921680789579.1636965-UTR-P-littoralis_Contig1295:35010..35092Pylaiella littoralis U1_48UTRP-littoralis_Contig1295 35011..35092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789579.1504505-CDS-P-littoralis_Contig1295:34851..350101680789579.1504505-CDS-P-littoralis_Contig1295:34851..35010Pylaiella littoralis U1_48CDSP-littoralis_Contig1295 34852..35010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1295.16.1prot_P-littoralis_Contig1295.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1295 34852..35010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1295.16.1

>prot_P-littoralis_Contig1295.16.1 ID=prot_P-littoralis_Contig1295.16.1|Name=mRNA_P-littoralis_Contig1295.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MFPIGFVVWKRFDDDTRLKGQVYDFKAPYWRVRYSDGNWEDLTRTELQKL
VR*
back to top

mRNA from alignment at P-littoralis_Contig1295:34697..35092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1295.16.1 ID=mRNA_P-littoralis_Contig1295.16.1|Name=mRNA_P-littoralis_Contig1295.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig1295:34697..35092- (Pylaiella littoralis U1_48)
TTGGCACTTGTACCACCCAGATGCCCCCGCTCTCAAACCTCCCTCCCCGC CAAACCCTCTGTCTCGTTCTGAAGCCCTACGCATGTTCCCAATAGGTTTC GTGGTATGGAAGCGTTTCGACGACGACACCCGCCTGAAGGGACAGGTGTA TGACTTCAAGGCGCCTTACTGGAGAGTGCGCTACTCGGACGGGAACTGGG AGGACCTGACCCGTACGGAGTTGCAGAAGCTGGTACGGTAGTACTTCATC TTCGCTCGGGGCCGGGGCAACAGCCGGAGCGACTTCAGCGGAATTCCAGA CTTATGTGGTGAATTGGATGGGGTTGGTCGCTGGGTACGTTGTGGTGGAG TTTGGATACTGGAAGGCCACGGTCTGTCACGCAGGGAGAGTTGTGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1295:34697..35092-

>mRNA_P-littoralis_Contig1295.16.1 ID=mRNA_P-littoralis_Contig1295.16.1|Name=mRNA_P-littoralis_Contig1295.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig1295:34697..35092- (Pylaiella littoralis U1_48)
ATGTTCCCAATAGGTTTCGTGGTATGGAAGCGTTTCGACGACGACACCCG
CCTGAAGGGACAGGTGTATGACTTCAAGGCGCCTTACTGGAGAGTGCGCT
ACTCGGACGGGAACTGGGAGGACCTGACCCGTACGGAGTTGCAGAAGCTG
GTACGGTAG
back to top