mRNA_P-littoralis_Contig77.9.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: D7G6X6_ECTSI (RL10P_insert domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X6_ECTSI) HSP 1 Score: 402 bits (1032), Expect = 9.760e-135 Identity = 207/227 (91.19%), Postives = 213/227 (93.83%), Query Frame = 1
Query: 289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEADDMIT 969
MPRSQRNQKVSLTKT+KKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVR+DFR+DSRFFMGKNKVM+LALGKSEQDEYQDNLRQVSKRLKGQVGLLFT RP EEV TYFKALAVADHAPPGFVH ETIPLPTGSLG+WPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIA F M LLCRWS G FE LAE D M+T
Sbjct: 1 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTDDAMVT 227
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: A0A835Z2W2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W2_9STRA) HSP 1 Score: 236 bits (603), Expect = 2.570e-70 Identity = 121/222 (54.50%), Postives = 162/222 (72.97%), Query Frame = 1
Query: 289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEA 954
MP+S+RN+ VSLT TAKKGR LKQ ++ ++R +D + ++VF + N+RS+L+K+VR+DFR DSRFFMGKN +M ALG S +DEY DNLRQVS+ ++GQ GLL T+R +E V +YF LAV + A GF ETI LP G +WPV MM+Q RKLG+ VEV++ L RK +MC G+ ++PE AKLL L+D+KI++FK+KL CRWS G FE A +A
Sbjct: 1 MPKSKRNKTVSLTSTAKKGRTLKQAVIKDIRDHIDSHQRLFVFRYDNMRSRLMKDVRLDFRGDSRFFMGKNTIMQRALGTSVEDEYSDNLRQVSRHIRGQCGLLVTNRSQEAVLSYFADLAVPEFANAGFFAQETITLPVGPT-QWPVGMMDQLRKLGLQVEVQDSQLWLRKECDMCKKGQALTPEQAKLLTLHDRKISVFKIKLTCRWSEGDFEEYAAPDA 221
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: H3GA64_PHYRM (Ribosome assembly factor mrt4 n=24 Tax=Phytophthora TaxID=4783 RepID=H3GA64_PHYRM) HSP 1 Score: 209 bits (532), Expect = 5.090e-60 Identity = 109/223 (48.88%), Postives = 155/223 (69.51%), Query Frame = 1
Query: 289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEAD 957
MP+S+R + LT+ KKG ELKQ +V +R VD Y S YVFSF N+R+ K+VRMDF KDSRFF+GKNKVM LALG+S+++EY +NL ++SK + G GLLFT++P EEV YF L+V+DH GFV TET+ +P G L ++ SM+E R LG+ V+++ GV+V + +C G+ ++PE AKLL +D K+A FK+ +L WS ++ +A E+A+
Sbjct: 1 MPKSKRQRTKPLTQANKKGNELKQNVVEAIRNAVDTYASAYVFSFQNMRTNHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGSTGLLFTNKPHEEVVAYFAKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMLESLRGLGLPVDLKNGVIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSLWSKDKYQRIAAEDAN 222
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: A0A3M6VK82_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VK82_9STRA) HSP 1 Score: 206 bits (525), Expect = 5.350e-59 Identity = 109/222 (49.10%), Postives = 152/222 (68.47%), Query Frame = 1
Query: 289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEA 954
MP+S+R + LT+ KKGRELK+ +V +R VD Y S Y FS+ N+R+ K VRMDF KDSRFF+GKNKVM LALG+S+++EY +NL ++SK + G GLLFT++P EEV YF L+V+DH GFV TET+ +P G L ++ SMME R LG+ V+++ G +V + +C G+ ++PE AKLL +D K+A FK+ +L WS +E LA E+A
Sbjct: 1 MPKSKRQRTKPLTQANKKGRELKKNVVDSIRNAVDTYESAYAFSYQNMRTNHFKNVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLYRLSKDVSGNTGLLFTNKPHEEVMDYFVKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMMESLRGLGLPVDLKNGAIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSVWSKDKYERLATEDA 221
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: M4C3P0_HYAAE (Ribosome assembly factor mrt4 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3P0_HYAAE) HSP 1 Score: 206 bits (525), Expect = 5.350e-59 Identity = 110/228 (48.25%), Postives = 159/228 (69.74%), Query Frame = 1
Query: 289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEADDMITS 972
MP+S+R + +LT+ KKG ELK+ +V +R VD Y S YVFSF N+R+ K+VRMDF KDSRFF+GKNKVM LALG+S++DEY +NL ++SK + G GLLFT++P +EV YF L+V+D+ GFV T+TI +P G L ++ SM+E R LG+ V+++ GV++ + +C +G+ ++PE AKLL +D K+A FK+ +L WS +E L+ ADD +TS
Sbjct: 1 MPKSKRQRTKTLTQANKKGNELKKNVVEAIRNAVDTYESAYVFSFQNMRTSHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEDEYAENLFRLSKDVSGNTGLLFTNKPRDEVVDYFAKLSVSDYPRAGFVATDTITIPEGPLPQFIGSMLESLRGLGLPVDLKNGVVMLSRNYTICKSGQTLTPEQAKLLVHFDHKLAEFKLVMLSVWSKDTYERLS---ADDAVTS 224
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: A0A3F2RLT2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLT2_9STRA) HSP 1 Score: 206 bits (523), Expect = 1.190e-58 Identity = 109/222 (49.10%), Postives = 156/222 (70.27%), Query Frame = 1
Query: 289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEA 954
MP+S+R + +LT+ KKG LKQ +V VR VD Y S YVFSF N+R+ K+VRMDF KDSRFF+GKNKVM LALG+S+++EY +NL ++SK + G GLLFT++P EEV YF L+V+D+ GFV TET+ +P G L ++ SM+E R LG+ V++++GV+V + +C G+ ++PE AKLL +D+K+A FK+ +L WS ++ LA E+A
Sbjct: 1 MPKSKRQRTKALTQADKKGNALKQNVVDAVRNAVDTYTSAYVFSFQNMRTNHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGNTGLLFTNKPHEEVLDYFSKLSVSDYPRSGFVVTETVTVPEGPLPQFIGSMIESLRGLGLPVDLKKGVVVLSQNYTICKTGQAVTPEQAKLLVHFDRKMAEFKLVVLSVWSKDKYQRLASEDA 221
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: A0A662WXB9_9STRA (Ribosome assembly factor mrt4 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXB9_9STRA) HSP 1 Score: 205 bits (522), Expect = 1.470e-58 Identity = 110/222 (49.55%), Postives = 155/222 (69.82%), Query Frame = 1
Query: 289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEA 954
MP+S+R + LT+ KKG ELKQ +V VR VD Y S +VFSF N+R+ KEVRMDF KDSRFFMGKNKVM LALG+S+++EY D+L ++S + G GLLFT++P +EV YF L+V+D+ GFV TE + + G L ++ SM+E R LG+ V++++GV+V + +C G+ ++PE AKLL +D+K+A FK+ +L WS GA+E LA E+A
Sbjct: 1 MPKSKRQRSKPLTQANKKGNELKQSVVEAVRNAVDTYASAFVFSFQNMRTNHFKEVRMDF-KDSRFFMGKNKVMKLALGRSKEEEYADDLFRLSNDVSGNSGLLFTNKPHDEVLAYFAKLSVSDYPRSGFVATEVVTISEGPLPQFIGSMVESLRGLGLPVDLKKGVVVLSQDYTICKVGQTLTPEQAKLLVHFDRKMAEFKLVMLSVWSKGAYERLAAEDA 221
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: A0A484EG03_BRELC (Ribosome assembly factor mrt4 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EG03_BRELC) HSP 1 Score: 205 bits (521), Expect = 2.050e-58 Identity = 107/223 (47.98%), Postives = 152/223 (68.16%), Query Frame = 1
Query: 289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEAD 957
MP+S+R + LTK KKG ELK+ +V +R V+ Y S++VF+F N+RS K+VRM+F KDSRFF+GKNKVM LALG+S+++EY NL +S + G GLLFTS+P +EVTTYF L++ D GFV TET+ +P G L ++ SM+E R LG+ V++ +G +V + +C AG+ ++PE AKLL +D+K+A FK+ LL WS + +A E AD
Sbjct: 1 MPKSKRQRTKPLTKANKKGNELKKSVVDAIRNAVNTYDSIFVFTFQNMRSNHFKDVRMEF-KDSRFFLGKNKVMKLALGRSKEEEYAQNLHCLSNDVSGNTGLLFTSKPYDEVTTYFAKLSIRDFPRSGFVATETVSIPEGPLSQFTGSMLESLRGLGLPVDLRKGTIVLSQNYTICKAGQSLTPEQAKLLVHFDRKMADFKLVLLSGWSNDKYRRIAVESAD 222
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: K3WRY3_GLOUD (Ribosome assembly factor mrt4 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRY3_GLOUD) HSP 1 Score: 201 bits (512), Expect = 3.940e-57 Identity = 106/219 (48.40%), Postives = 153/219 (69.86%), Query Frame = 1
Query: 289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAE 945
MP+S+R + +LTK KK +LKQ +V VR+ VD Y +++ FSFVN+R+ KEVRMDFR DSRFF+GKNKVM +ALG++E +EY DNL ++S+ L G VGLLFT + E+EVT YF L+ D A GFV TET+ +P G L ++ SM+E R LG+ V++++G +V + +C G+ ++PE KLL +D+K+A FK+ +L WS G ++ LA+
Sbjct: 1 MPKSKRQRTKALTKVDKKTSDLKQKVVESVREAVDSYATLFAFSFVNMRTNHFKEVRMDFR-DSRFFLGKNKVMKVALGRTEAEEYADNLSKISRDLNGNVGLLFTDKTEDEVTEYFNKLSEKDFARSGFVATETVQVPQGPLPQFIGSMVESLRTLGLPVDLKKGNVVLNQDYTICKEGQTLTPEQCKLLVHFDRKMAEFKLVMLSSWSKGEYKRLAD 218
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: A0A485KK68_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK68_9STRA) HSP 1 Score: 199 bits (507), Expect = 2.780e-56 Identity = 107/223 (47.98%), Postives = 155/223 (69.51%), Query Frame = 1
Query: 289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWS-GGAFETLAEEEA 954
MP+S+R + LT+T KG +LK+G+V +R +DEY +VYVFSF N+R+ K VR DF DSRFF+GKNKVM +ALG++ ++EY +N+ +++ + G VGLL T++P EEV YFK LAV D A GFV TET+ +P G L ++ SM+E R+LG+ V+++ G +V +C AG+ ++PE AKLL +DKK+A F ++LL RWS G +E LA ++A
Sbjct: 1 MPKSKRVRTKPLTQTKSKGADLKKGVVETIRNAIDEYQTVYVFSFENMRTNHFKVVRADFS-DSRFFLGKNKVMKVALGRTPEEEYAENIFKLATDISGSVGLLMTNKPNEEVQQYFKDLAVEDFAKSGFVATETVTIPAGPLPQFIGSMVESLRQLGLPVDLKRGAIVLINDHTICKAGQTLTPEQAKLLVHFDKKMATFNVQLLSRWSTDGKYERLAPKKA 222 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig77.9.1 >prot_P-littoralis_Contig77.9.1 ID=prot_P-littoralis_Contig77.9.1|Name=mRNA_P-littoralis_Contig77.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=229bp MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSback to top mRNA from alignment at P-littoralis_Contig77:39145..43239- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig77.9.1 ID=mRNA_P-littoralis_Contig77.9.1|Name=mRNA_P-littoralis_Contig77.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4095bp|location=Sequence derived from alignment at P-littoralis_Contig77:39145..43239- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig77:39145..43239- >mRNA_P-littoralis_Contig77.9.1 ID=mRNA_P-littoralis_Contig77.9.1|Name=mRNA_P-littoralis_Contig77.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=687bp|location=Sequence derived from alignment at P-littoralis_Contig77:39145..43239- (Pylaiella littoralis U1_48)back to top |