mRNA_P-littoralis_Contig77.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.9.1
Unique NamemRNA_P-littoralis_Contig77.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: D7G6X6_ECTSI (RL10P_insert domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X6_ECTSI)

HSP 1 Score: 402 bits (1032), Expect = 9.760e-135
Identity = 207/227 (91.19%), Postives = 213/227 (93.83%), Query Frame = 1
Query:  289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEADDMIT 969
            MPRSQRNQKVSLTKT+KKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVR+DFR+DSRFFMGKNKVM+LALGKSEQDEYQDNLRQVSKRLKGQVGLLFT RP EEV TYFKALAVADHAPPGFVH ETIPLPTGSLG+WPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIA F M LLCRWS G FE LAE   D M+T
Sbjct:    1 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTDDAMVT 227          
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: A0A835Z2W2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W2_9STRA)

HSP 1 Score: 236 bits (603), Expect = 2.570e-70
Identity = 121/222 (54.50%), Postives = 162/222 (72.97%), Query Frame = 1
Query:  289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEA 954
            MP+S+RN+ VSLT TAKKGR LKQ ++ ++R  +D +  ++VF + N+RS+L+K+VR+DFR DSRFFMGKN +M  ALG S +DEY DNLRQVS+ ++GQ GLL T+R +E V +YF  LAV + A  GF   ETI LP G   +WPV MM+Q RKLG+ VEV++  L  RK  +MC  G+ ++PE AKLL L+D+KI++FK+KL CRWS G FE  A  +A
Sbjct:    1 MPKSKRNKTVSLTSTAKKGRTLKQAVIKDIRDHIDSHQRLFVFRYDNMRSRLMKDVRLDFRGDSRFFMGKNTIMQRALGTSVEDEYSDNLRQVSRHIRGQCGLLVTNRSQEAVLSYFADLAVPEFANAGFFAQETITLPVGPT-QWPVGMMDQLRKLGLQVEVQDSQLWLRKECDMCKKGQALTPEQAKLLTLHDRKISVFKIKLTCRWSEGDFEEYAAPDA 221          
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: H3GA64_PHYRM (Ribosome assembly factor mrt4 n=24 Tax=Phytophthora TaxID=4783 RepID=H3GA64_PHYRM)

HSP 1 Score: 209 bits (532), Expect = 5.090e-60
Identity = 109/223 (48.88%), Postives = 155/223 (69.51%), Query Frame = 1
Query:  289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEAD 957
            MP+S+R +   LT+  KKG ELKQ +V  +R  VD Y S YVFSF N+R+   K+VRMDF KDSRFF+GKNKVM LALG+S+++EY +NL ++SK + G  GLLFT++P EEV  YF  L+V+DH   GFV TET+ +P G L ++  SM+E  R LG+ V+++ GV+V  +   +C  G+ ++PE AKLL  +D K+A FK+ +L  WS   ++ +A E+A+
Sbjct:    1 MPKSKRQRTKPLTQANKKGNELKQNVVEAIRNAVDTYASAYVFSFQNMRTNHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGSTGLLFTNKPHEEVVAYFAKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMLESLRGLGLPVDLKNGVIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSLWSKDKYQRIAAEDAN 222          
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: A0A3M6VK82_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VK82_9STRA)

HSP 1 Score: 206 bits (525), Expect = 5.350e-59
Identity = 109/222 (49.10%), Postives = 152/222 (68.47%), Query Frame = 1
Query:  289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEA 954
            MP+S+R +   LT+  KKGRELK+ +V  +R  VD Y S Y FS+ N+R+   K VRMDF KDSRFF+GKNKVM LALG+S+++EY +NL ++SK + G  GLLFT++P EEV  YF  L+V+DH   GFV TET+ +P G L ++  SMME  R LG+ V+++ G +V  +   +C  G+ ++PE AKLL  +D K+A FK+ +L  WS   +E LA E+A
Sbjct:    1 MPKSKRQRTKPLTQANKKGRELKKNVVDSIRNAVDTYESAYAFSYQNMRTNHFKNVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLYRLSKDVSGNTGLLFTNKPHEEVMDYFVKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMMESLRGLGLPVDLKNGAIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSVWSKDKYERLATEDA 221          
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: M4C3P0_HYAAE (Ribosome assembly factor mrt4 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3P0_HYAAE)

HSP 1 Score: 206 bits (525), Expect = 5.350e-59
Identity = 110/228 (48.25%), Postives = 159/228 (69.74%), Query Frame = 1
Query:  289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEADDMITS 972
            MP+S+R +  +LT+  KKG ELK+ +V  +R  VD Y S YVFSF N+R+   K+VRMDF KDSRFF+GKNKVM LALG+S++DEY +NL ++SK + G  GLLFT++P +EV  YF  L+V+D+   GFV T+TI +P G L ++  SM+E  R LG+ V+++ GV++  +   +C +G+ ++PE AKLL  +D K+A FK+ +L  WS   +E L+   ADD +TS
Sbjct:    1 MPKSKRQRTKTLTQANKKGNELKKNVVEAIRNAVDTYESAYVFSFQNMRTSHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEDEYAENLFRLSKDVSGNTGLLFTNKPRDEVVDYFAKLSVSDYPRAGFVATDTITIPEGPLPQFIGSMLESLRGLGLPVDLKNGVVMLSRNYTICKSGQTLTPEQAKLLVHFDHKLAEFKLVMLSVWSKDTYERLS---ADDAVTS 224          
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: A0A3F2RLT2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLT2_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.190e-58
Identity = 109/222 (49.10%), Postives = 156/222 (70.27%), Query Frame = 1
Query:  289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEA 954
            MP+S+R +  +LT+  KKG  LKQ +V  VR  VD Y S YVFSF N+R+   K+VRMDF KDSRFF+GKNKVM LALG+S+++EY +NL ++SK + G  GLLFT++P EEV  YF  L+V+D+   GFV TET+ +P G L ++  SM+E  R LG+ V++++GV+V  +   +C  G+ ++PE AKLL  +D+K+A FK+ +L  WS   ++ LA E+A
Sbjct:    1 MPKSKRQRTKALTQADKKGNALKQNVVDAVRNAVDTYTSAYVFSFQNMRTNHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGNTGLLFTNKPHEEVLDYFSKLSVSDYPRSGFVVTETVTVPEGPLPQFIGSMIESLRGLGLPVDLKKGVVVLSQNYTICKTGQAVTPEQAKLLVHFDRKMAEFKLVVLSVWSKDKYQRLASEDA 221          
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: A0A662WXB9_9STRA (Ribosome assembly factor mrt4 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXB9_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.470e-58
Identity = 110/222 (49.55%), Postives = 155/222 (69.82%), Query Frame = 1
Query:  289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEA 954
            MP+S+R +   LT+  KKG ELKQ +V  VR  VD Y S +VFSF N+R+   KEVRMDF KDSRFFMGKNKVM LALG+S+++EY D+L ++S  + G  GLLFT++P +EV  YF  L+V+D+   GFV TE + +  G L ++  SM+E  R LG+ V++++GV+V  +   +C  G+ ++PE AKLL  +D+K+A FK+ +L  WS GA+E LA E+A
Sbjct:    1 MPKSKRQRSKPLTQANKKGNELKQSVVEAVRNAVDTYASAFVFSFQNMRTNHFKEVRMDF-KDSRFFMGKNKVMKLALGRSKEEEYADDLFRLSNDVSGNSGLLFTNKPHDEVLAYFAKLSVSDYPRSGFVATEVVTISEGPLPQFIGSMVESLRGLGLPVDLKKGVVVLSQDYTICKVGQTLTPEQAKLLVHFDRKMAEFKLVMLSVWSKGAYERLAAEDA 221          
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: A0A484EG03_BRELC (Ribosome assembly factor mrt4 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EG03_BRELC)

HSP 1 Score: 205 bits (521), Expect = 2.050e-58
Identity = 107/223 (47.98%), Postives = 152/223 (68.16%), Query Frame = 1
Query:  289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAEEEAD 957
            MP+S+R +   LTK  KKG ELK+ +V  +R  V+ Y S++VF+F N+RS   K+VRM+F KDSRFF+GKNKVM LALG+S+++EY  NL  +S  + G  GLLFTS+P +EVTTYF  L++ D    GFV TET+ +P G L ++  SM+E  R LG+ V++ +G +V  +   +C AG+ ++PE AKLL  +D+K+A FK+ LL  WS   +  +A E AD
Sbjct:    1 MPKSKRQRTKPLTKANKKGNELKKSVVDAIRNAVNTYDSIFVFTFQNMRSNHFKDVRMEF-KDSRFFLGKNKVMKLALGRSKEEEYAQNLHCLSNDVSGNTGLLFTSKPYDEVTTYFAKLSIRDFPRSGFVATETVSIPEGPLSQFTGSMLESLRGLGLPVDLRKGTIVLSQNYTICKAGQSLTPEQAKLLVHFDRKMADFKLVLLSGWSNDKYRRIAVESAD 222          
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: K3WRY3_GLOUD (Ribosome assembly factor mrt4 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRY3_GLOUD)

HSP 1 Score: 201 bits (512), Expect = 3.940e-57
Identity = 106/219 (48.40%), Postives = 153/219 (69.86%), Query Frame = 1
Query:  289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWSGGAFETLAE 945
            MP+S+R +  +LTK  KK  +LKQ +V  VR+ VD Y +++ FSFVN+R+   KEVRMDFR DSRFF+GKNKVM +ALG++E +EY DNL ++S+ L G VGLLFT + E+EVT YF  L+  D A  GFV TET+ +P G L ++  SM+E  R LG+ V++++G +V  +   +C  G+ ++PE  KLL  +D+K+A FK+ +L  WS G ++ LA+
Sbjct:    1 MPKSKRQRTKALTKVDKKTSDLKQKVVESVREAVDSYATLFAFSFVNMRTNHFKEVRMDFR-DSRFFLGKNKVMKVALGRTEAEEYADNLSKISRDLNGNVGLLFTDKTEDEVTEYFNKLSEKDFARSGFVATETVQVPQGPLPQFIGSMVESLRTLGLPVDLKKGNVVLNQDYTICKEGQTLTPEQCKLLVHFDRKMAEFKLVMLSSWSKGEYKRLAD 218          
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Match: A0A485KK68_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK68_9STRA)

HSP 1 Score: 199 bits (507), Expect = 2.780e-56
Identity = 107/223 (47.98%), Postives = 155/223 (69.51%), Query Frame = 1
Query:  289 MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQVGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAIFKMKLLCRWS-GGAFETLAEEEA 954
            MP+S+R +   LT+T  KG +LK+G+V  +R  +DEY +VYVFSF N+R+   K VR DF  DSRFF+GKNKVM +ALG++ ++EY +N+ +++  + G VGLL T++P EEV  YFK LAV D A  GFV TET+ +P G L ++  SM+E  R+LG+ V+++ G +V      +C AG+ ++PE AKLL  +DKK+A F ++LL RWS  G +E LA ++A
Sbjct:    1 MPKSKRVRTKPLTQTKSKGADLKKGVVETIRNAIDEYQTVYVFSFENMRTNHFKVVRADFS-DSRFFLGKNKVMKVALGRTPEEEYAENIFKLATDISGSVGLLMTNKPNEEVQQYFKDLAVEDFAKSGFVATETVTIPAGPLPQFIGSMVESLRQLGLPVDLKRGAIVLINDHTICKAGQTLTPEQAKLLVHFDKKMATFNVQLLSRWSTDGKYERLAPKKA 222          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X6_ECTSI9.760e-13591.19RL10P_insert domain-containing protein n=2 Tax=Ect... [more]
A0A835Z2W2_9STRA2.570e-7054.50Ribosome assembly factor mrt4 n=1 Tax=Tribonema mi... [more]
H3GA64_PHYRM5.090e-6048.88Ribosome assembly factor mrt4 n=24 Tax=Phytophthor... [more]
A0A3M6VK82_9STRA5.350e-5949.10Ribosome assembly factor mrt4 n=1 Tax=Peronospora ... [more]
M4C3P0_HYAAE5.350e-5948.25Ribosome assembly factor mrt4 n=1 Tax=Hyaloperonos... [more]
A0A3F2RLT2_9STRA1.190e-5849.10Ribosome assembly factor mrt4 n=1 Tax=Phytophthora... [more]
A0A662WXB9_9STRA1.470e-5849.55Ribosome assembly factor mrt4 n=2 Tax=Nothophytoph... [more]
A0A484EG03_BRELC2.050e-5847.98Ribosome assembly factor mrt4 n=1 Tax=Bremia lactu... [more]
K3WRY3_GLOUD3.940e-5748.40Ribosome assembly factor mrt4 n=1 Tax=Globisporang... [more]
A0A485KK68_9STRA2.780e-5647.98Ribosome assembly factor mrt4 n=1 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:39145..43239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6X6
Preferred nameMRTO4
PFAMsRibosomal_L10
Model size1852
Max annot lvl2759|Eukaryota
KEGG koko:K14815
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons3
Evalue1.07e-141
EggNOG OGsCOG0244@1|root,KOG0816@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L10/acidic P0
Ec32 orthologEc-01_011870.1
Descriptionribosomal large subunit assembly
Cds size687
COG categoryJ
BRITEko00000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791585.8642144-UTR-P-littoralis_Contig77:39144..400211680791585.8642144-UTR-P-littoralis_Contig77:39144..40021Pylaiella littoralis U1_48UTRP-littoralis_Contig77 39145..40021 -
1680791585.9144645-UTR-P-littoralis_Contig77:42951..432391680791585.9144645-UTR-P-littoralis_Contig77:42951..43239Pylaiella littoralis U1_48UTRP-littoralis_Contig77 42952..43239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791585.8759882-CDS-P-littoralis_Contig77:40021..401351680791585.8759882-CDS-P-littoralis_Contig77:40021..40135Pylaiella littoralis U1_48CDSP-littoralis_Contig77 40022..40135 -
1680791585.8878758-CDS-P-littoralis_Contig77:41933..422061680791585.8878758-CDS-P-littoralis_Contig77:41933..42206Pylaiella littoralis U1_48CDSP-littoralis_Contig77 41934..42206 -
1680791585.902132-CDS-P-littoralis_Contig77:42651..429511680791585.902132-CDS-P-littoralis_Contig77:42651..42951Pylaiella littoralis U1_48CDSP-littoralis_Contig77 42652..42951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.9.1prot_P-littoralis_Contig77.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 40022..42951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.9.1

>prot_P-littoralis_Contig77.9.1 ID=prot_P-littoralis_Contig77.9.1|Name=mRNA_P-littoralis_Contig77.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=229bp
MPRSQRNQKVSLTKTAKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRS
KLLKEVRMDFRKDSRFFMGKNKVMMLALGKSEQDEYQDNLRQVSKRLKGQ
VGLLFTSRPEEEVTTYFKALAVADHAPPGFVHTETIPLPTGSLGEWPVSM
MEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIAI
FKMKLLCRWSGGAFETLAEEEADDMITS*
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mRNA from alignment at P-littoralis_Contig77:39145..43239-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.9.1 ID=mRNA_P-littoralis_Contig77.9.1|Name=mRNA_P-littoralis_Contig77.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4095bp|location=Sequence derived from alignment at P-littoralis_Contig77:39145..43239- (Pylaiella littoralis U1_48)
TTTGCTGCTGCTTGTTGCTGTGCTTCGTACTCCACCACTGCCATCTAGCT CTCGACCTCGCCCAAGCACACCCGGACCACCCTCCCCGTACGCTACGGGA CGCCCTTGATTCTTGAGCCAACGGCGTGGTCAACGACACTTGGTTTGGTG CACTTTTAAGCTGTCGGCAACAAGGAGATATAATCGGAGAGAGGTCTCCT GTTGATCCATTTGGTCTTGGGTGGAGGGTGGAGCACGACACGAGAGCAGC ACCACACAGCACAGCAGCAGCAGTCGAACACAGCAGCCATGCCGCGATCA CAGCGAAATCAGAAGGTTTCCCTGACAAAGACAGCCAAGAAGGGTCGAGA GCTGAAGCAGGGTATCGTCAGCGAGGTGCGCAAATGCGTCGACGAATACC CGAGCGTGTACGTATTTTCGTTCGTGAACTTGAGGAGCAAGCTCTTGAAG GAGGTGAGGATGGACTTCAGGAAGGACAGTCGCTTCTTCATGGGGAAGAA TAAGGTCATGATGCTGGCGCTGGGAAAGTCGGAGCAGGACGAGTATCAGG ACAACTTGCGACAAGTCAGCAAGAGGTTAAAAGGACAGGTGGGATCACAA CGTGGGCGTTTCTATTTTTATGTTGAAACAATTTTCTTCAAACACATTAT ATCAACTCTACTGCTGTACATGTATAATACATTCAACAGGCAGGCGAGAA GGCCGAAGGCCGACGAAGCAAAGCTTTTCGAATCGGCCAAAAACGTTTCG TGTCACAGCAGTAGAATACGGTATGTGTGTGTGCCTGTAATACTGTTGCT GTATGTCTCGTGCGCCTGGAAATGTGTCATACTCACAAGGTCAACGCCAC TTTTGAGAGTGCTCACAGCTGATTCCATGTTCTCTTCGGTCCTATCAAAA AGGCGGCCTGATATCGTACACCTGCTGGAGCATGTCATAGTACGATGGCG GTTTGCCAAACATGACGCTCCAACCCGCCCCCTCCCCCCGCACCTTTTAT AATGTGCTTTCCATCTCACGGCCATGCCCACAGGTCGGGCTGCTGTTCAC GAGCAGGCCAGAGGAAGAGGTGACCACGTACTTCAAAGCCCTTGCGGTTG CCGACCACGCGCCGCCTGGGTTCGTTCACACCGAAACGATCCCGCTGCCC ACGGGGTCGCTGGGCGAGTGGCCTGTCTCGATGATGGAGCAGTTTCGAAA GCTGGGAGTGGTGGTGGAGGTGGAGGAAGGGGTGTTGGTGAACCGCAAGG CGATAAATATGTGCACCGCGGGCGAGCCCATCTCGCCGGAGGGAGCCAAG CTCTTGGTGAGTGCGTATCATATAACTAGACATCTGTGCCTTTTCATGCA TCCTCAGAAAGTTGTTCAGCTTCGGTGTGATGAGCAAGAATATCGCCCAG AGCTGTAATTCTTTCAGGCGTGGGCGAACAAGCGACCCCCCCCCCCTCCC CCGCGGGCATGCAGACTCGCTTCTCCGCGGCTGATCCTTCACCCGTACGT GTGAAAATTTCCGTGCGCGCGGCCAATGAAAAAAGTCCCTTACACAGCAG TAGCTCTCCTCCCACGACGATCAAGAGCCCATTTTTTTCACGGCAAAGGC AATCCTAAGCCTGAGTGGCAAAAGAGTTTTGGACCACTGCTGTCGAGCAG CATCGCTACTGCTGCTCAACGTTGTCGGTATCACTACGCCATGTCTTAAC CCTTCTTGCTCCTGGGGGTATTTTTTACTATGAAAAATGGTACTCATTTT TTTTAGGACTGGTTCATTCAGGCGGAAGAAGATAGAAACCTCGCGGCGAA CCCGCCATAGAAAGCCATGCGGACTGGGGTGGTACGCCTTTTCACCACCT GCGTACTGCTGCCGTTGTACATATGTATGTCTGCGTTTATAGTCAGCGGC TCGCACAGAGCAGCAGCAATGGCCATTCGTTCGAGGCACGTGCTGCAGGT TTTTGCGCGCAATGGATGTAAGTACTAGTGCAGCTTCTGTGGTTTTGTAT TGCATCTAGATACCGGTACTCTCTGCAGTAACCTCTCGCCTCTCACGCAC ACATCACACACGGCAGCGCACACACACAGCAGAGGTCCGCCATCTTTGAC TGCCAGTATTTACACGTACAGCAGGAAGATTTCGCACGCGGTCGTGGCAG TGACCGACGATCAATCGCCAGTTTGCTGCTCAGATGGTACTGCTGGAACG AAGTAATTCGCATGCCCTTGGGGACTGGCTCGAAGGAGAGACGGGGCGCC ACCACTACATATTACAGTAGTGTATCAAAGGCCTGCTTCTGGGCCCACGG TATAGGGTAATCAAAATAATACGAGTCAAATACTAGGTCGGGAGCTTCAG TTTAGATTCACTGATCATGTTTTACTCATCAATCCTTTCATTTCATTGAT TGTAGACGGTGTTTCCTCGAAAGGCCTGGGATGAAAAGCCGTCATTCCAC AATTTTTTGAGGTGGCAGCGGCATGGCGACCACTGGGTAGCCCTTCTAGC TTCTCCAGGGACGTAACCAGCCTGTTGTGAGCCCTTTCCAGGCGCCCAGC TGCATGTATGGCCGGTGCTCAGGTGTACATTTTTTTTTCGGTTTTGTCAC GGCTGAACATTTTTTTGTCTGTCTGGTTATCGAGGGAATATTATCTGATT CTGATTTAGAACCCGGGCTATTCGTTTTGCCCGGCCGGAATAGCCTGGTC CCGGGAGGGTTTTTGGCTTTTGACGTTTTGTGGATGTTGGCATGGGTGTT GCACGCCTTTGCACCTATTAAAGGGCGTTTCAAGGCGTATTTTCTACTTC GAAGTATTATGTATGGCACTTGTATCATACTGCTAGTCGACTGCACCTCA ACGTCACGTTGGGTGCGAGTACCGTTTGCGGCTCGGACGGTGCAAGTACA CCTTTTCGTAGTCACAAGAAAAGCTGACCCGAGCAGATGCTGATCGCACA CGCTTCTTCACTTACGTCGTTCTTTGGTGGTGTTCAGAGACTGAACTGTT CGTTTCCGTGAAAAAACACGAAATACTGCTTCGTCCGCCCGTCACCACCC TCTTGCCTTCTCTGTGCGCTTTCCTCCCATGCCGCGATGCGATGTTCATC TTAGGCCTTGTACGATAAGAAGATCGCCATCTTCAAGATGAAACTCTTGT GCCGGTGGAGCGGGGGAGCGTTTGAGACGTTAGCCGAGGAAGAGGCTGAC GACATGATCACTTCTTGATGCATGTGTGTTAACTTCCGTCTGTTGAATTT TTGAGAATGTTTGGCTCGTGTTGGATCTAGACGTGGGCGTGCACCTTGTT TTTTGTGTGGGCGGCGGCTGTTGTGCGTTGTCGTGGAGTTGTGTGCCGTA CAGTTTCGGGGGAATGTTTTTCATCTTGCATTCTCGACCTTTTCGGGAAA GGTGCGAATGTACCTCTTAGCTCTTTCCTTGCACCTTCTGTGTACGTGTA GCATGCAAGAAGAAACGCAAGGTTTTATTCGACCAGTGCAACGATGGTGT ATCGGTCCACGCCCAGACAGGACGTCCTAATCGCTCTCAAAATAAGGTGA TGCGCATCAATTCCTCGTGTGTTTGCTTATTTTTTAGTTTCGATAACGTG GTGCGAACGTTGACCTTGTGTGGTGTTAATGTCGTGAGAAGTGGCCTATG TGGCGAATGCATTAGCTGTTGTAATGAAATCTTGAAAGAACTGTCATCGC CGATGATCCGAACCGTAGGCTACGTACGAGGCACTGCTGGAATGACACGG CTTTCGAATGTCGCGACATCCGCGGTGCATTTCAACTAGCATGCATTTAT CCCGCGGTTGTGAGGTAGCGGAGACATTAATTTGATGCCATTGCTTCTGT TCTGGGCACCGTTGAAAAATATGATCACATGTTACGTTCATCAGGTACAG AAAGCCGGCACTAAAACGAGTTGTCAAAAAATGGCGAACTGGCACACTAG AGACCACCACAACACAAGGTTTTCTGTGGTCCGTGTAAGACAGTTCCTTC ATTATCTGTTTTGGTCATAACTTTCGAAAAAAAACAAATTGAAAAGTGAA ACAACAATTTTCGTGACGGCCGCGTGGAGCTACGTCTATGTCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:39145..43239-

>mRNA_P-littoralis_Contig77.9.1 ID=mRNA_P-littoralis_Contig77.9.1|Name=mRNA_P-littoralis_Contig77.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=687bp|location=Sequence derived from alignment at P-littoralis_Contig77:39145..43239- (Pylaiella littoralis U1_48)
ATGCCGCGATCACAGCGAAATCAGAAGGTTTCCCTGACAAAGACAGCCAA
GAAGGGTCGAGAGCTGAAGCAGGGTATCGTCAGCGAGGTGCGCAAATGCG
TCGACGAATACCCGAGCGTGTACGTATTTTCGTTCGTGAACTTGAGGAGC
AAGCTCTTGAAGGAGGTGAGGATGGACTTCAGGAAGGACAGTCGCTTCTT
CATGGGGAAGAATAAGGTCATGATGCTGGCGCTGGGAAAGTCGGAGCAGG
ACGAGTATCAGGACAACTTGCGACAAGTCAGCAAGAGGTTAAAAGGACAG
GTCGGGCTGCTGTTCACGAGCAGGCCAGAGGAAGAGGTGACCACGTACTT
CAAAGCCCTTGCGGTTGCCGACCACGCGCCGCCTGGGTTCGTTCACACCG
AAACGATCCCGCTGCCCACGGGGTCGCTGGGCGAGTGGCCTGTCTCGATG
ATGGAGCAGTTTCGAAAGCTGGGAGTGGTGGTGGAGGTGGAGGAAGGGGT
GTTGGTGAACCGCAAGGCGATAAATATGTGCACCGCGGGCGAGCCCATCT
CGCCGGAGGGAGCCAAGCTCTTGGCCTTGTACGATAAGAAGATCGCCATC
TTCAAGATGAAACTCTTGTGCCGGTGGAGCGGGGGAGCGTTTGAGACGTT
AGCCGAGGAAGAGGCTGACGACATGATCACTTCTTGA
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