mRNA_P-littoralis_Contig1147.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1147.6.1
Unique NamemRNA_P-littoralis_Contig1147.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1147.6.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 8.170e-69
Identity = 198/441 (44.90%), Postives = 259/441 (58.73%), Query Frame = 3
Query:  462 MWPRGVSQGGGGTGREGFVFPRGRTAINPP--KFPSNGTSSQVLSWMQRMLLFFENENIEYIFNGNAAAIPVINCRDRSALLNTYDENEVKDHLRAFGIILEATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRAEQLLSMLRSIGVDKTEPEIVRIIVRQLPDTYDVEKRTLLRDEGLSRDEVESIIRDSYARRVAGQLRRPALTSTKSTTPATPSNPHALVIGNGYHQGRGGGA-----------GRTRGGGNVAFADGRGQQQQQWPQGSGGSSRPSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQQQVQXXXXXXXXXXXXXXXXXXLARDGGASAHRGKSQLGVGGIFDCGSNAMYHQPDSLPPPNSPMGMVYMCGRCGRSGHKEFDCTAPRRFEG 1745
            MWP GVS  GG TG  G   P G T +  P  + P N T+  +LSW +R L + +N ++++   G+A  +PV++C+D   L   Y    V +H R +  ILEA   APFE+ L++C SV +AW+ +  W LP    +  LL  +L+ + M++DEDP+ F +R  QL + LR++G+ K++ E+V+I+VRQLP  YDVEKRT L    L+R E++ ++R  YA   A ++R      + + TPA   NPHALV+G G+  G GG             G    G    ++ G G  QQQ PQ      R  QQ         XXXXXXXXXXXXXXXXXXX  XXXXXX Q Q  +XXXXXXXXXXXXX                     GVGGI+DCGSNA+YHQP+SLPPP +PMG V+ CGRCGR+ H   DC APRRFEG
Sbjct:    1 MWPGGVSHDGG-TGVPGL--PLGGTIVRTPVPRIPPNCTADTLLSWRRRFLAYMDNHDLQHTIFGSAE-VPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLKASEMRE---RGSAALTPAVSVNPHALVVGRGF--GHGGNXXXXXXXXXXXXGNNCDGRGQHWSSGGGVVQQQQPQLQVQQYRQPQQPQRHMQQPNXXXXXXXXXXXXXXXXXXXQQXXXXXXSQMQPYRXXXXXXXXXXXXXQPALN----------------GVGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCGRNDHHAIDCAAPRRFEG 416          
BLAST of mRNA_P-littoralis_Contig1147.6.1 vs. uniprot
Match: A0A6H5JU47_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU47_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 4.830e-65
Identity = 193/439 (43.96%), Postives = 250/439 (56.95%), Query Frame = 3
Query:  462 MWPRGVSQGGGGTGREGFVFPRGRTAINPP--KFPSNGTSSQVLSWMQRMLLFFENENIEYIFNGNAAAIPVINCRDRSALLNTYDENEVKDHLRAFGIILEATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRAEQLLSMLRSIGVDKTEPEIVRIIVRQLPDTYDVEKRTLLRDEGLSRDEVESIIRDSYARRVAGQLRRPALTSTKSTTPATPSNPHALVIGNGY-HQGRGGGAGRTRGGGNVAFADGRGQQ--------QQQWPQGSGGSSRPSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQQQVQXXXXXXXXXXXXXXXXXXLARDGGASAHRGKSQLGVGGIFDCGSNAMYHQPDSLPPPNSPMGMVYMCGRCGRSGHKEFDCTAPRRFEG 1745
            MWP GVS  GG TG  G   P G T +  P  + P N T+   LSW +R L + +N N+++   G+A  +PV++C+D   L   Y    V +H R +  ILEA   APFE+ L++C SV +AW+ +  W LP    +  LL  +L+ + M++DEDP+ F +R  QL + LR++G+ K++ E+V+I+VRQLP  YDVEKRT L    L+R E++ ++R  YA   A ++R      + ++TPA   NPHALV+G  + H G                 DGRGQ          QQ PQ      R  QQ         XXXXXXXXXXXXXXXXXXX  XXXXXX Q Q  +XXXXXXXXXXXXX                     GVGGI+DCGSNA+YHQP SLPPP +PMG+V+ CGR     H    C APRRFEG
Sbjct:    1 MWPGGVSHDGG-TGVPGL--PLGGTIVTTPVPRIPPNCTADTFLSWRRRFLAYVDNHNLQHTIFGSAE-VPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLKASEMRE---RGSAASTPAVSVNPHALVVGRDFGHGGNXXXXXXXXXXXXXXNCDGRGQHWSSXXXXXXQQQPQLQVQQYRQPQQPQRHMQQPNXXXXXXXXXXXXXXXXXXXQQXXXXXXXQMQPYRXXXXXXXXXXXXXQPALN----------------GVGGIYDCGSNAVYHQPKSLPPPGAPMGIVHRCGRXXXXXHHAIGCAAPRRFEG 416          
BLAST of mRNA_P-littoralis_Contig1147.6.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 1.620e-62
Identity = 188/441 (42.63%), Postives = 250/441 (56.69%), Query Frame = 3
Query:  432 GGTSGVNFGGMWPRGVSQGGGGTGREGFVFPRGRTAINPP--KFPSNGTSSQVLSWMQRMLLFFENENIEYIFNGNAAAIPVINCRDRSALLNTYDENEVKDHLRAFGIILEATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRAEQLLSMLRSIGVDKTEPEIVRIIVRQLPDTYDVEKRTLLRDEGLSRDEVESIIRDSYARRVAGQLRRPALTSTKSTTPATPSNPHALVIGNGY-HQGRGGGAGRTRGGGNVAFADGRGQQQQQWPQGSGGSSRPSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQQQVQXXXXXXXXXXXXXXXXXXLARDGGASAHRGKSQLGVGGIFDCGSNAMYHQPDSLPPPNSPMGMVYMCGRCGRSGHKEFDCTAPRRFEG 1745
            GG S      MWP GVS  GG TG  G   P G T +  P  + P N T+  VLSW +R L + +N N+++ F G+A  +PV++C+D+  L+  Y    V +H R +  ILEA   APFE+ L++C SV +AW+ +  W LP    +  LL  +L+ + M++DE+P+ F +R  QL + LR++G+ K++ E+V+I+VRQ P  YDVEKRT L    L+R E++ ++R  YA   A ++R      + + TPA   NPHALV+G G+ H G                 DGRGQ    W  G G   +   Q                    XXXXXXXXXXXXXXXX  +QQ  XXXXXXXX  XXXXXXXX        A  G     VGGI+DCGS+A+YHQP+SLPPP++PMG V+ CGR         DC APRRFEG
Sbjct:   63 GGASSAPVRPMWPGGVSHDGG-TGVPGL--PLGGTIVRTPVPRIPPNCTADTVLSWRRRFLAYVDNHNLQHTFFGSAE-VPVVSCQDKGYLIRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDDITMSDDENPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQYPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLKASEMRE---RGSAALTPAVSVNPHALVVGRGFGHGGNXXXXXXXXXXXXGNNCDGRGQH---WSSGGGVVQQQQPQLQVQQYRQPQQPQRHMQQPNXXXXXXXXXXXXXXXXXXRQQXXXXXXXXXXPYXXXXXXXXXXXXXXXPALNG-----VGGIYDCGSDAVYHQPESLPPPDAPMGTVHRCGRXXXXXXHAIDCAAPRRFEG 488          
BLAST of mRNA_P-littoralis_Contig1147.6.1 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 4.450e-62
Identity = 197/449 (43.88%), Postives = 255/449 (56.79%), Query Frame = 3
Query:  432 GGTSGVNFGGMWPRGVSQGGGGTGREGFVFPRGRTAINPP--KFPSNGTSSQVLSWMQRMLLFFENENIEYIFNGNAAAIPVINCRDRSALLNTYDENEVKDHLRAFGIILEATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRAEQLLSMLRSIGVDKTEPEIVRIIVRQLPDTYDVEKRTLLRDEGLSRDEVESIIRDSYARRVAGQLRRPALTSTKSTTPATPSNPHALVIGNGY-HQGRGGGAGRTRGGGNVAFADGRGQQ--------QQQWPQGSGGSSRPSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQQQVQXXXXXXXXXXXXXXXXXXLARDGGASAHRGKSQLGVGGIFDCGSNAMYHQPDSLPPPNSPMGMVYMCGRCGRSGHKEFDCTAPRRFEG 1745
            GG S      MWP GVS  GG TG  G   P G T +  P  + P N T+   LSW +R L + +N N+++   G+A  +PV++C+D   L   Y    V +H R +  ILEA   APFE+ L++C SV +AW+ +  W LP    +  LL  +L+ + M++DEDP+ F +R  QL + LR++G+ K++ E+V+I+VRQLP  YDVEKRT L    L+R E++ ++R  YA   A ++R      + ++TPA   NPHALV+G G+ H G                 DGRGQ         QQQ PQ      R  QQ         XXXXXXXXXXXXXXXXXXX  XXXXXX Q Q  +XXXXXXXXXXXXX                     GVGG++DCGSNA+ HQP+SLPPP +PMG V+ CGR     H   DC APRRFEG
Sbjct:   63 GGASSAPVRPMWPGGVSHDGG-TGVPGL--PLGGTIVRTPVPRIPPNCTADTFLSWRRRFLAYVDNHNLQHTIFGSAE-VPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLKASEMRE---RGSVASTPAVFVNPHALVVGRGFGHGGNXXXXXXXXXXXXGNNCDGRGQHWSSGXXVVQQQQPQLQVQQYRQPQQPQRHMQQPNXXXXXXXXXXXXXXXXXXXQQXXXXXXSQMQPYRXXXXXXXXXXXXXQPALN----------------GVGGVYDCGSNAVSHQPESLPPPGTPMGTVHRCGRXXXXXHHAIDCAAPRRFEG 488          
BLAST of mRNA_P-littoralis_Contig1147.6.1 vs. uniprot
Match: A0A6H5LA89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA89_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 5.250e-60
Identity = 180/426 (42.25%), Postives = 233/426 (54.69%), Query Frame = 3
Query:  432 GGTSGVNFGGMWPRGVSQGGGGTGREGFVFPRGRTAINPP--KFPSNGTSSQVLSWMQRMLLFFENENIEYIFNGNAAAIPVINCRDRSALLNTYDENEVKDHLRAFGIILEATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRAEQLLSMLRSIGVDKTEPEIVRIIVRQLPDTYDVEKRTLLRDEGLSRDEVESIIRDSYARRVAGQLRRPALTSTKSTTPATPSNPHALVIGNGYHQGRGGGAGRTRGGGNVAFADGRGQQQQQWPQGSGGSSRPSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQQQVQXXXXXXXXXXXXXXXXXXLARDGGASAHRGKSQLGVGGIFDCGSNAMYHQPDSLPPPNSPMGMVYMCGRCGRSG 1703
            GG S      MWP GVS  GG TG  G   P G T +  P  + P N T+   LSW +R L + +N N+++   G+A  +PV++C+D   L   Y    V +H R +  ILEA   APFE+ L++C SV  AW+ +  W LP    +  LL  +L+ + M++DEDP+ F +R  QL + LR++G+ K+E E+VRI+VRQLP  YDVEKRT L +  L+R E++ ++R  YA   A ++R      + + TPA   NPHALV+G G+  G G                        W            Q          XXXXXX     XXXXXXXXXXXXXXX   QQ  XXXXX      XXXXXXX        A  G     VGGI+DCGSNA+YHQP+SLPPP +PMG V+ CGRCGR G
Sbjct:   63 GGASSAPVRPMWPGGVSHDGG-TGVPGL--PLGGTIVRTPVPRIPPNCTADTFLSWRRRFLAYVDNHNLQHTIFGSAE-VPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAGAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSEQEVVRILVRQLPARYDVEKRTSLSNRDLTRAELQDVVRGRYATLKASEMRE---RGSAALTPAVSVNPHALVVGRGF--GHGXXXXXXXXXXXXXXXXXXXXXXXHWSSXXXXXXXXQPQLQVQQYRQPQXXXXXXQQPNKXXXXXXXXXXXXXXXXXXQQXXXXXXXQMQPYRXXXXXXXXXXXXXXPALNG-----VGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCGRHG 474          
BLAST of mRNA_P-littoralis_Contig1147.6.1 vs. uniprot
Match: A0A6H5K2K1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2K1_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 6.820e-59
Identity = 182/437 (41.65%), Postives = 239/437 (54.69%), Query Frame = 3
Query:  432 GGTSGVNFGGMWPRGVSQGGGGTGREGFVFPRGRTAINPP--KFPSNGTSSQVLSWMQRMLLFFENENIEYIFNGNAAAIPVINCRDRSALLNTYDENEVKDHLRAFGIILEATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRAEQLLSMLRSIGVDKTEPEIVRIIVRQLPDTYDVEKRTLLRDEGLSRDEVESIIRDSYARRVAGQLRRPALTSTKSTTPATPSNPHALVIGNGY-HQGRGGGAGRTRGGGNVAFADGRGQQQQQWPQGSGGSSRPSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQQQVQXXXXXXXXXXXXXXXXXXLARDGGASAHRGKSQLGVGGIFDCGSNAMYHQPDSLPPPNSPMGMVYMCGRCGRSGHKEFDCTAPR 1733
            GG S      MWP GVS  GG TG  G   P G T +  P  + P N T+   LSW +R L + +N N+++   G+A  +PV++C+D   L   Y    V +H R +  ILEA   APFE+ L++C SV +AW+ +  W LP    +  LL  +L+ + M++DEDP+ F +R  QL + LR++G+ K++ E+V+I+VRQLP  YDVEKRT L    L+R E++ ++R  YA   A ++R      + + TPA   NPHALV+G G+ H G                 DGRGQ    W  G G   +   Q                    XXXXXXXXXXXXXXXX  +QQ  XXXXXX X   XXXXXXX        A  G     VGGI+DCGSNA+YHQP+SLPPP +PMG V+ CG          DC APR
Sbjct:   63 GGASSAPVRPMWPGGVSHDGG-TGVPGL--PLGGTIVRTPVPRIPPNCTADTFLSWRRRFLAYVDNHNLQHTIFGSAE-VPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLKASEMRE---RGSAALTPAVSVNPHALVVGRGFGHGGNXXXXXXXXXXXXGNNCDGRGQH---WSSGGGVVQQQQPQLQVQQYRQPQQPQRHMQQPNXXXXXXXXXXXXXXXXXXRQQXXXXXXXXMXPYRXXXXXXXXXXXXXXPALNG-----VGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGXXXXXXXXAIDCAAPR 484          
BLAST of mRNA_P-littoralis_Contig1147.6.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 3.400e-46
Identity = 182/488 (37.30%), Postives = 240/488 (49.18%), Query Frame = 3
Query:  432 GGTSGVNFGGMWPRGVSQGGGGTGREGFVFPRGRTAINPP--KFPSNGTSSQVLSWMQRMLLFFENENIEYIFNGNAAAIPVINCRDRSALLNTYDENEVKDHLRAFGIILEATANAPFESRLHACESVVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRAEQLLSMLRSIGVDKTEPEIVRIIVRQLPDTYDVEKRTL------------------------------------------------LRDEGLSRDEVESIIRDSYARRVAGQLRRPALTSTKSTTPATPSNPHALVIGNGYHQGRGGGAGRTRGGGNVAFADGRGQQQQQWPQGSGGSSRPSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQQQVQXXXXXXXXXXXXXXXXXXLARDGGASAHRGKSQLGVGGIFDCGSNAMYHQPDSLPPPNSPMGMVYMCGRCGRSGHKEFDCTAPRRFEG 1745
            GG S      MWP GVS  GG TG  G   P G T +  P  + P N T+   LSW +R L + +N N+++   G+A  +PV++C+D   L   Y    V +H R +  ILEA   APFE+ L++C SV +AW+ +  W LP    +  LL  +L+ + M++DEDP+ F +R  QL + LR++G+ K++ E+V+I+VRQLP  YDVEKRT                                                 L +  L+R E++ ++R  Y    A ++R      + ++TPA         +G G+                                           X         X X     XXXXXXXXXXXXXXXXXX+QQQ   XXXXXXX XXXXXXXXXX      A         GVGGI+DCGSNA+YHQP+SLPPP +PMG V+ CGRC R GH   DC APRRFEG
Sbjct:   63 GGVSSAPVRPMWPGGVSHDGG-TGVPGL--PLGGTIVRTPVPRIPLNCTADTFLSWRRRFLAYVDNHNLQHTIFGSAE-VPVVSCKDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWFLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLSNRDLTRAELQDVVRGRYTTLKASEMRE---RGSAASTPAV------SXVGRGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQYRQPQQPXRXMQQPNXXXXXXXXXXXXXXXXXXRQQQXXXXXXXXXXYXXXXXXXXXXXXXXXPALN-------GVGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCERHGHHAIDCAAPRRFEG 530          
BLAST of mRNA_P-littoralis_Contig1147.6.1 vs. uniprot
Match: A0A6H5JXN1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN1_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 5.600e-30
Identity = 127/282 (45.04%), Postives = 158/282 (56.03%), Query Frame = 3
Query:  903 MAEDEDPRFFMTRAEQLLSMLRSIGVDKTEPEIVRIIVRQLPDTYDVEKRTLLRDEGLSRDEVESIIRDSYARRVAGQLRRPALTSTKSTTPATPSNPHALVIGNGY-HQGRGGGAGRTRGGGNVAFADGRGQQQQQWPQGSGGSSRPSQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQQQVQXXXXXXXXXXXXXXXXXXLARDGGASAHRGKSQLGVGGIFDCGSNAMYHQPDSLPPPNSPMGMVYMCGRCGRSGHKEFDCTAPRRFEG 1745
            M++DEDP+ F +R  QL + LR++G+ K++ E+V+I+VRQLP  YDVEKRT L    L+R E++ ++R  YA   A ++R      + + TPA   NPHALV+G G+ H G                 DGRGQ    W  G G   +   Q                    XXXXXXXXXXXXXXXX  +QQ  XXXXXX X   XXXXXXX        A  G     VGG +DCGSNA+YHQP+SLPPP +PMG V+ CGR         DC APRRFEG
Sbjct:    1 MSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRDLTRAELQDVVRGRYATLKASEMRE---RGSAALTPAVSVNPHALVVGRGFGHGGNXXXXXXXXXXXXGNNCDGRGQH---WSSGGGVVQQQQPQLQVQQYRQPQQPQRHMQQPNXXXXXXXXXXXXXXXXXXRQQXXXXXXXXMXPYRXXXXXXXXXXXXXXPALNG-----VGGNYDCGSNAVYHQPESLPPPGAPMGTVHRCGRXXXXXXHAIDCAAPRRFEG 271          
BLAST of mRNA_P-littoralis_Contig1147.6.1 vs. uniprot
Match: A0A6H5JBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBM3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 6.990e-17
Identity = 55/129 (42.64%), Postives = 66/129 (51.16%), Query Frame = 3
Query: 1584 GVGGIFDCGSNAMYHQPDSLPPPNSPMGMVYMCGRCGRSGHKEFDCTAPRRFEGNCSTCSQYGHISRFCAVARGVRTTGNYLNVVTTCGESNVDGHQQMYVDA---------TPGGPAVYHDQQGLDGA 1943
            GVGGI+DCG NA+YHQP+S PPP +PMG V+ C           DC APRRFEG    C QYGH+ R CA +        +LNVVT+ G     G +  Y  A          P    VY+    L GA
Sbjct:  121 GVGGIYDCGCNAVYHQPESPPPPGAPMGTVHRCXXXXXXXXXAIDCAAPRRFEGTSGACDQYGHMWRNCAKSN----RHPHLNVVTSAGAL---GPEYAYTTADTSAVQFRDVPAADGVYYSDTMLAGA 242          
BLAST of mRNA_P-littoralis_Contig1147.6.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.370e-15
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 3
Query: 1584 GVGGIFDCGSNAMYHQPDSLPPPNSPMGMVYMCGRCGRSGHKEFDCTAPRRFEG 1745
            GVGGI+DCGSNA+YHQP+SLPPP +PM  V+ C RCGR GH   DC APRRFEG
Sbjct:  233 GVGGIYDCGSNAVYHQPESLPPPGAPMSTVHRCCRCGRHGHHAIDCAAPRRFEG 286          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1147.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JBS7_9PHAE8.170e-6944.90CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JU47_9PHAE4.830e-6543.96CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JVD9_9PHAE1.620e-6242.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN41_9PHAE4.450e-6243.88Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LA89_9PHAE5.250e-6042.25Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2K1_9PHAE6.820e-5941.65Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYB5_9PHAE3.400e-4637.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN1_9PHAE5.600e-3045.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JBM3_9PHAE6.990e-1742.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV09_9PHAE1.370e-1572.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1147contigP-littoralis_Contig1147:61937..64614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2678
Hectar predicted targeting categoryother localisation
Exons1
Cds size1881
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789467.7292593-UTR-P-littoralis_Contig1147:61936..621451680789467.7292593-UTR-P-littoralis_Contig1147:61936..62145Pylaiella littoralis U1_48UTRP-littoralis_Contig1147 61937..62145 +
1680789467.754272-UTR-P-littoralis_Contig1147:64026..646141680789467.754272-UTR-P-littoralis_Contig1147:64026..64614Pylaiella littoralis U1_48UTRP-littoralis_Contig1147 64027..64614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789467.7419236-CDS-P-littoralis_Contig1147:62145..640261680789467.7419236-CDS-P-littoralis_Contig1147:62145..64026Pylaiella littoralis U1_48CDSP-littoralis_Contig1147 62146..64026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1147.6.1prot_P-littoralis_Contig1147.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1147 62146..64026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1147.6.1

>prot_P-littoralis_Contig1147.6.1 ID=prot_P-littoralis_Contig1147.6.1|Name=mRNA_P-littoralis_Contig1147.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=627bp
MADAAVGANSLEELNARFVELEEASRQRDLAHKAEVADLRQQLEHMKAAP
SAAETTSAPRAAPVSGASTRYGGMGGTSGVNFGGMWPRGVSQGGGGTGRE
GFVFPRGRTAINPPKFPSNGTSSQVLSWMQRMLLFFENENIEYIFNGNAA
AIPVINCRDRSALLNTYDENEVKDHLRAFGIILEATANAPFESRLHACES
VVDAWKKISSWILPTSSDEIFLLTQQLETVQMAEDEDPRFFMTRAEQLLS
MLRSIGVDKTEPEIVRIIVRQLPDTYDVEKRTLLRDEGLSRDEVESIIRD
SYARRVAGQLRRPALTSTKSTTPATPSNPHALVIGNGYHQGRGGGAGRTR
GGGNVAFADGRGQQQQQWPQGSGGSSRPSQQQQQQQWPQGSGGSSRPPQQ
QQGQRWPQGNGGSSRPPQQQQQVQRWPHGGNGSSRPPQQQQQLARDGGAS
AHRGKSQLGVGGIFDCGSNAMYHQPDSLPPPNSPMGMVYMCGRCGRSGHK
EFDCTAPRRFEGNCSTCSQYGHISRFCAVARGVRTTGNYLNVVTTCGESN
VDGHQQMYVDATPGGPAVYHDQQGLDGATAAGDGQWNCAVHHVSAEQANV
HASLGDGGSGEDDSWNSGVVQQEYLA*
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mRNA from alignment at P-littoralis_Contig1147:61937..64614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1147.6.1 ID=mRNA_P-littoralis_Contig1147.6.1|Name=mRNA_P-littoralis_Contig1147.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2678bp|location=Sequence derived from alignment at P-littoralis_Contig1147:61937..64614+ (Pylaiella littoralis U1_48)
GTATTTTCGCTGGTGTGTCACTACTTGGAACAACAGCAGTCGTGTCACTT TTTGGAACAGCAGTGGTGGTGTGTGTATTTGGGTGTGTGCCGTGTGTGTC ACCTCTTGGAACGACGGCGGGGAGTTATTTTCTTGTGTGTGTGTATCATC TATCTTGGATTACCGATAGACTTGGTCCAGCCATCGGACAGCGGGCTGCA TTGTGAAGCATGGCAGATGCAGCGGTTGGAGCAAACAGCTTGGAGGAGTT GAATGCGAGGTTTGTGGAATTGGAGGAGGCATCTCGGCAGCGGGATTTGG CCCATAAGGCGGAGGTAGCTGACCTGCGACAGCAGCTGGAGCACATGAAG GCTGCACCGTCTGCTGCTGAAACTACATCGGCACCCCGAGCTGCACCGGT GTCTGGAGCCTCTACTAGATATGGAGGAATGGGTGGCACCTCCGGTGTCA ACTTCGGTGGGATGTGGCCCCGAGGGGTGAGTCAAGGTGGTGGTGGCACA GGACGAGAGGGTTTCGTTTTTCCGCGTGGTCGCACTGCTATAAATCCCCC AAAATTCCCATCAAACGGGACATCATCGCAAGTGCTTTCGTGGATGCAGC GGATGCTTTTATTTTTCGAAAATGAGAACATCGAGTATATCTTCAATGGG AATGCCGCGGCGATCCCGGTCATCAACTGTAGGGACCGCTCTGCACTTCT CAACACTTACGATGAGAATGAAGTCAAAGATCACTTGAGGGCTTTTGGTA TCATACTGGAGGCAACGGCGAATGCGCCTTTCGAGTCTCGGTTGCATGCA TGCGAGTCGGTGGTGGATGCATGGAAGAAGATTTCAAGTTGGATTTTGCC CACAAGCTCTGATGAGATCTTCCTGCTTACACAGCAGTTAGAGACTGTCC AAATGGCTGAGGACGAAGACCCACGATTTTTCATGACTCGTGCGGAGCAA CTTCTGTCGATGCTCCGTTCAATTGGTGTTGACAAGACCGAGCCCGAGAT CGTCCGGATTATTGTCCGCCAGTTGCCAGACACCTACGACGTAGAAAAAC GCACACTCCTGCGTGACGAGGGCCTTTCACGTGATGAGGTGGAGTCGATC ATTCGTGACTCATATGCTCGCCGTGTGGCAGGACAGCTACGGCGGCCTGC ACTGACGTCGACAAAATCTACTACCCCTGCGACACCTTCTAACCCGCATG CACTGGTGATTGGCAACGGTTACCACCAGGGACGTGGGGGTGGGGCTGGG CGTACGCGAGGAGGCGGTAACGTAGCGTTTGCTGATGGTCGGGGGCAACA GCAGCAGCAGTGGCCTCAAGGAAGTGGTGGTTCGTCGCGGCCATCACAGC AGCAACAGCAGCAGCAGTGGCCTCAAGGAAGTGGTGGTTCGTCGCGGCCA CCACAGCAGCAGCAGGGGCAGCGGTGGCCTCAAGGAAATGGAGGTTCGTC GAGGCCACCACAGCAGCAGCAACAGGTACAACGGTGGCCTCACGGAGGTA ATGGTTCTTCGCGGCCACCACAGCAGCAGCAGCAGTTGGCGCGTGATGGT GGAGCTTCAGCACATCGTGGTAAGTCACAGCTAGGAGTTGGCGGTATCTT TGACTGCGGCTCCAATGCGATGTACCATCAACCCGATTCCCTTCCGCCAC CAAATTCGCCGATGGGTATGGTGTATATGTGCGGGCGATGTGGCAGATCC GGCCACAAAGAGTTTGACTGCACCGCCCCGAGGCGATTTGAAGGGAACTG CAGCACGTGTAGCCAGTATGGTCACATCTCTCGCTTCTGTGCTGTTGCGC GAGGGGTCCGGACCACTGGGAACTACCTTAACGTCGTCACCACGTGTGGT GAGAGCAATGTTGACGGGCATCAGCAGATGTACGTGGATGCGACGCCGGG GGGGCCAGCAGTTTATCACGACCAGCAGGGCTTGGATGGCGCAACGGCAG CAGGTGACGGCCAGTGGAACTGCGCGGTGCACCACGTGTCGGCAGAGCAG GCGAATGTTCATGCATCCCTTGGTGACGGTGGCAGCGGCGAGGATGACAG TTGGAACAGCGGTGTGGTCCAGCAGGAGTACCTCGCCTAAGATTTGCCCG AACACGGAACAGATGTAATCGATTCCGAGGAGAATGCTGCTGAgGGAGGC GACGGCACAGGTGATGGTCCATTGGCTGACACGTCTGGTGGAGCCGGCGG GGTTGGCTTCCGAGGCTTCTTTTTCCTTGCAGCTTGTTTGTTCTGTTGCC TCTGCCCCCTCCGCAAGTACTTGCCGAAAATTTTCGAATCGTCGACCGGG GTCCATGGTTTTCATGGGTGACACCGGGGCCGTGCTCCATGGCGTTCCTT CTGGACAACATGTCTACAAACTGGCGGTACCCGCGCTTGGTGTGGGAGAA GAATCTCACCGTGGGGGATGGCAAGCAAGTGGCGGTATCTTTCTATGGAG ATCTGGACGTCATTTCACAGTACGGTGCCTGGAAAGGAGGACGTCTTAAT CACGCTTACCAACGTCGCCGTGGTCCCTGATTTGGCCTTCAACATCATCT CGTTCAACCGCATTCAGGAGCAGCAGTTGATCGTCTTGCATCGATGGGGC TGCGATGATGAACGGGAGGATGAACTTCACCAAGTATCCCCAGGGCAACT TCATCGAGGCCACCCGTGTTGCTCACGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1147:61937..64614+

>mRNA_P-littoralis_Contig1147.6.1 ID=mRNA_P-littoralis_Contig1147.6.1|Name=mRNA_P-littoralis_Contig1147.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1881bp|location=Sequence derived from alignment at P-littoralis_Contig1147:61937..64614+ (Pylaiella littoralis U1_48)
ATGGCAGATGCAGCGGTTGGAGCAAACAGCTTGGAGGAGTTGAATGCGAG
GTTTGTGGAATTGGAGGAGGCATCTCGGCAGCGGGATTTGGCCCATAAGG
CGGAGGTAGCTGACCTGCGACAGCAGCTGGAGCACATGAAGGCTGCACCG
TCTGCTGCTGAAACTACATCGGCACCCCGAGCTGCACCGGTGTCTGGAGC
CTCTACTAGATATGGAGGAATGGGTGGCACCTCCGGTGTCAACTTCGGTG
GGATGTGGCCCCGAGGGGTGAGTCAAGGTGGTGGTGGCACAGGACGAGAG
GGTTTCGTTTTTCCGCGTGGTCGCACTGCTATAAATCCCCCAAAATTCCC
ATCAAACGGGACATCATCGCAAGTGCTTTCGTGGATGCAGCGGATGCTTT
TATTTTTCGAAAATGAGAACATCGAGTATATCTTCAATGGGAATGCCGCG
GCGATCCCGGTCATCAACTGTAGGGACCGCTCTGCACTTCTCAACACTTA
CGATGAGAATGAAGTCAAAGATCACTTGAGGGCTTTTGGTATCATACTGG
AGGCAACGGCGAATGCGCCTTTCGAGTCTCGGTTGCATGCATGCGAGTCG
GTGGTGGATGCATGGAAGAAGATTTCAAGTTGGATTTTGCCCACAAGCTC
TGATGAGATCTTCCTGCTTACACAGCAGTTAGAGACTGTCCAAATGGCTG
AGGACGAAGACCCACGATTTTTCATGACTCGTGCGGAGCAACTTCTGTCG
ATGCTCCGTTCAATTGGTGTTGACAAGACCGAGCCCGAGATCGTCCGGAT
TATTGTCCGCCAGTTGCCAGACACCTACGACGTAGAAAAACGCACACTCC
TGCGTGACGAGGGCCTTTCACGTGATGAGGTGGAGTCGATCATTCGTGAC
TCATATGCTCGCCGTGTGGCAGGACAGCTACGGCGGCCTGCACTGACGTC
GACAAAATCTACTACCCCTGCGACACCTTCTAACCCGCATGCACTGGTGA
TTGGCAACGGTTACCACCAGGGACGTGGGGGTGGGGCTGGGCGTACGCGA
GGAGGCGGTAACGTAGCGTTTGCTGATGGTCGGGGGCAACAGCAGCAGCA
GTGGCCTCAAGGAAGTGGTGGTTCGTCGCGGCCATCACAGCAGCAACAGC
AGCAGCAGTGGCCTCAAGGAAGTGGTGGTTCGTCGCGGCCACCACAGCAG
CAGCAGGGGCAGCGGTGGCCTCAAGGAAATGGAGGTTCGTCGAGGCCACC
ACAGCAGCAGCAACAGGTACAACGGTGGCCTCACGGAGGTAATGGTTCTT
CGCGGCCACCACAGCAGCAGCAGCAGTTGGCGCGTGATGGTGGAGCTTCA
GCACATCGTGGTAAGTCACAGCTAGGAGTTGGCGGTATCTTTGACTGCGG
CTCCAATGCGATGTACCATCAACCCGATTCCCTTCCGCCACCAAATTCGC
CGATGGGTATGGTGTATATGTGCGGGCGATGTGGCAGATCCGGCCACAAA
GAGTTTGACTGCACCGCCCCGAGGCGATTTGAAGGGAACTGCAGCACGTG
TAGCCAGTATGGTCACATCTCTCGCTTCTGTGCTGTTGCGCGAGGGGTCC
GGACCACTGGGAACTACCTTAACGTCGTCACCACGTGTGGTGAGAGCAAT
GTTGACGGGCATCAGCAGATGTACGTGGATGCGACGCCGGGGGGGCCAGC
AGTTTATCACGACCAGCAGGGCTTGGATGGCGCAACGGCAGCAGGTGACG
GCCAGTGGAACTGCGCGGTGCACCACGTGTCGGCAGAGCAGGCGAATGTT
CATGCATCCCTTGGTGACGGTGGCAGCGGCGAGGATGACAGTTGGAACAG
CGGTGTGGTCCAGCAGGAGTACCTCGCCTAA
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