mRNA_P-littoralis_Contig21.187.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig21.187.4
Unique NamemRNA_P-littoralis_Contig21.187.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A6H5L4T7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4T7_9PHAE)

HSP 1 Score: 541 bits (1394), Expect = 2.580e-183
Identity = 285/372 (76.61%), Postives = 315/372 (84.68%), Query Frame = 2
Query:   41 MDRYLGATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKKLGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLVCSCWNPAACGSKGNXXXXXXXXXXXXXXXXXXXAEEDDGSRKQAQE-DSLDVGPLAVSAAAGASTNALKRPFRAMYEQRGRLFTVEFLERRAAQGVTLETLKPALV 1153
            MDRY+G+TMFCKECVAESDI+VDPRAGEIICRTCAVVIGERCIDDGAEW+T+A+DS+NGR DPNRCG  AAASPLLSAKSGMNT+IEGG+D KLTA+LQ+LQG+AV+ES SERALK+DFF KVREFG+RLGLTHAMQE ACLLLRKAEDSGLFK KKAERG AICVAVTLLTCRQWRR QTMKEM+T+FNV +KALNKAVKKL NLEIE+ PSLRGEHHIP LCDKLGLP FVSVAA+HAAQQAS+WDLV GMKPSAVAAAAVLLVCSCWNPAACG                       A +    ++ A E ++ DV P AVS A G +  A+KRPFRAMYEQRGRLFTVEFLERRAA+ VTLETLKP L+
Sbjct:    1 MDRYMGSTMFCKECVAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYAEDSNNGRADPNRCG--AAASPLLSAKSGMNTLIEGGQDSKLTAKLQKLQGMAVKESASERALKMDFFGKVREFGNRLGLTHAMQEHACLLLRKAEDSGLFKVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFNVSLKALNKAVKKLSNLEIERAPSLRGEHHIPLLCDKLGLPPFVSVAARHAAQQASRWDLVDGMKPSAVAAAAVLLVCSCWNPAACGD-------------GVVDRRSKKARKTQQQQQAAVEGETWDVRPAAVSEAGGTTVMAMKRPFRAMYEQRGRLFTVEFLERRAAKEVTLETLKPILM 357          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: T1KYS9_TETUR (Transcription initiation factor IIB n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KYS9_TETUR)

HSP 1 Score: 110 bits (274), Expect = 1.060e-22
Identity = 85/271 (31.37%), Postives = 142/271 (52.40%), Query Frame = 2
Query:   50 YLGATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVI------EGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLVC 841
            Y  A + C+E   ++ +  D RAG++IC  C +V+G+R ID G+EWRTF+++ +N   DP+R G  AA +PL+   + ++T+I        G   K +++ Q         S SER+L ++ F ++ +   ++ L   + E A LL ++  DS   +  K    +AI  A   ++CRQ    +T KE+  +  V  K + +  K  L  LE        G+  + + C  LGL + +  AA H A++A + D+V G  P +VAAAA+ + C
Sbjct:    3 YRKAKIGCREH-PDATLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKANA--DPSRVG--AAENPLME-NNDLSTIIARAEPNSSGEGFKYSSKKQM--------SSSERSL-LNGFKEISDMADKINLAKTIVERANLLFKQVHDS---RTTKGRSNDAIASACLYISCRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETNVDTITTGDFMV-RFCSNLGLSSAIQKAATHIARKAVELDIVPGRSPISVAAAAIYMAC 254          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A6P7VZH4_IXOSC (Transcription initiation factor IIB n=24 Tax=Ixodoidea TaxID=297308 RepID=A0A6P7VZH4_IXOSC)

HSP 1 Score: 108 bits (271), Expect = 3.400e-22
Identity = 88/265 (33.21%), Postives = 139/265 (52.45%), Query Frame = 2
Query:   59 ATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGR-----DQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLL 835
            A +FC +   ++ +  D RAG++IC  C +V+G+R +D G EWR F ++ SN  +DP R G  A+ +PLL+  S + T+I  G      D+  TA+ Q  + +    S S+RAL V+ F ++     R+ LT  + + + LL ++  D    K  K    +AI  A   + CRQ    +T KE+  +  V  K + +  K  L  LE        G+  + + C  LGLP+ V  AA H A++A + D+V G  P +VAAAA+ +
Sbjct:   10 ARVFCPDH-PDAALVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSN--NDPARVG--ASENPLLNG-SDLATMIGKGTGDASFDESGTAKYQNRKTM----SSSDRAL-VNAFREISNMADRINLTKTIVDRSNLLFKQVHDG---KTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETSVDLITTGDF-MSRFCSNLGLPSSVQKAATHIARKAVELDVVSGRSPISVAAAAIYM 259          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: TF2B_DICDI (Transcription initiation factor IIB n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=TF2B_DICDI)

HSP 1 Score: 108 bits (270), Expect = 5.540e-22
Identity = 76/261 (29.12%), Postives = 124/261 (47.51%), Query Frame = 2
Query:   65 MFCKEC-VAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKKLGNL--EIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLV 838
            ++C  C + + DI  D   G++ICR C VV+G+R +D+ +EWRTF++  S G D PNR G     +PLL   +   TV +G +D     RLQ    +   +     A K     ++      + L   +Q+ A  L R  +D    K  K    + +  A   + CRQ   ++T KE+A + NVP K +++  K +      +    ++  E    + C  L LP  V   A+H ++ A    +V G  P +V AA++ +V
Sbjct:   21 LWCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGAD-PNRVG--GPINPLLRDSALSTTVGKGSKDSGTLTRLQNKSALGTGDRNLLAAFK-----EIGRMADHMNLPQTVQDRANELFRFMDDK---KSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEISRCYKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMDMGIVAGKSPISVTAASIYMV 270          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: F0ZB51_DICPU (Uncharacterized protein gtf2b n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZB51_DICPU)

HSP 1 Score: 108 bits (271), Expect = 6.710e-22
Identity = 77/261 (29.50%), Postives = 125/261 (47.89%), Query Frame = 2
Query:   65 MFCKEC-VAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKKLGNL--EIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLV 838
            ++CK C V + DI  D   G++ICR C VV+G+R +D+ +EWRTF++  S G D PNR G     +PLL   +   T+ +G RD     RLQ    +   +     A K     ++      + L   +Q+ A  L R  +D    K  K    + +  A   + CRQ   ++T KE+A + NVP K +++  K +      +    ++  E    + C  L LP  V   ++H ++ A    +V G  P +V AA++ +V
Sbjct:   46 LWCKICRVNDPDIIEDYAKGDLICRECGVVVGDRIVDEHSEWRTFSNSESTGAD-PNRVG--GPINPLLRDSALSTTIGKGSRDSSSLNRLQNKSALGTGDRNLLAAFK-----EIGRMADHMNLPQTVQDRANELFRFMDDK---KSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEISRCYKIMKETFSSVLNLQTISTEDFTSRFCSTLKLPIEVKKISEHVSKTAMDMGIVAGKSPISVTAASIYMV 295          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A1D1UXA2_RAMVA (Transcription initiation factor IIB n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UXA2_RAMVA)

HSP 1 Score: 107 bits (267), Expect = 1.140e-21
Identity = 85/263 (32.32%), Postives = 134/263 (50.95%), Query Frame = 2
Query:   89 ESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCG-------ECAAASPLLSAKSGMNTVIEGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERG---EAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLVCS 844
            E+ +  D RAG+++C  C +V+G+R ID G EWRTF+++S  G DDP+R G       E A  S ++ A SG       G D +   + +  + I    S  +RAL   F  ++     R+ +  ++ + A +L ++  ++      KA RG   EAI  A   + CR+    +T KE+  I  V  K + +  K  L N++        G++ + + C  LGLP  V  AA H A++A+  DL GG  P+ VAAAA+ L C+
Sbjct:   18 EAILVEDYRAGDLVCPMCGLVVGDRVIDVGTEWRTFSNES--GGDDPSRVGGPENPLFEGAELSTMIGAASG-----PAGLDSQGFNKYRNRKTI----SPQDRALTTGF-REITTMAERINMARSIVDQAHMLFKQVYET------KAMRGRATEAIASACLYIACRKEGVPRTFKEICAISRVTKKEIGRCFKLILRNVDTSVDLITTGDY-MSRFCSNLGLPQTVQRAATHIARKATDMDLAGGRAPTTVAAAAIFLACA 261          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A8B6EZI2_MYTGA (Transcription initiation factor IIB n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EZI2_MYTGA)

HSP 1 Score: 107 bits (267), Expect = 1.200e-21
Identity = 82/259 (31.66%), Postives = 128/259 (49.42%), Query Frame = 2
Query:   92 SDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVI----------EGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLL 835
            +++  D  AG++IC  C +V+G+R +D G EWRTF+++ S G  DP+R G  AA +PLL     ++T+I          E G+      R           S ++RAL ++ F ++   G RL L   + + A  L ++  D    K  K    +AI  A   + CRQ    +T KE+  +  +  K + +  K  L NLE        G+  + + C  LGLP  V  AA H A++A + DLV G  P +VAA+A+ +
Sbjct:   21 ANLVEDYHAGDMICPECGLVVGDRVVDVGTEWRTFSNEKSTGNKDPSRVG--AAENPLLDG-GDLSTMIQVDPTSMSYDEHGKPMYKNRRTM---------SSADRAL-INAFREIGNMGDRLNLPKMIADRANNLFKQVNDG---KALKGRSNDAIAAACMYIACRQEGVPRTFKEICAVSKISKKEIGRVFKLILKNLETNVELITTGDF-MSRFCSNLGLPTSVQKAATHIARKAVEMDLVAGRSPISVAASAIYM 262          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: UPI0006B0CFC9 (transcription initiation factor IIB-like n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0CFC9)

HSP 1 Score: 105 bits (261), Expect = 6.790e-21
Identity = 87/265 (32.83%), Postives = 135/265 (50.94%), Query Frame = 2
Query:   59 ATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGR-----DQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLL 835
            A +FC     ++ +  D RAG++IC  C +VIG+R +D G EWRTF ++ S   +DP R G  AA +PLL+  S ++TV+  G      D+   A+ Q  + +    S S+RAL  + F ++     R+ LT  + + A  L ++  D    K  K    +AI  +   + CRQ    +T KE+  +  V  K + +  K  L  LE        G+  + + C  LGLP  V  AA H A++A + D+V G  P +VAAAA+ +
Sbjct:    9 AKIFCP-AHPDAPLIEDYRAGDMICPECGLVIGDRVVDVGTEWRTFNNEKST--NDPTRVG--AAENPLLNG-SDLSTVVGRGTGDASFDESGVAKYQNRRTM----SSSDRAL-TNAFREINNMADRINLTKTIVDRANSLFKQVHDG---KTLKGRSNDAIASSCLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETSVDLITTGDF-MSRFCSNLGLPNTVQRAATHIARKAVELDIVPGRSPISVAAAAIYM 258          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: UPI000C6DCA9B (transcription initiation factor IIB-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DCA9B)

HSP 1 Score: 104 bits (260), Expect = 9.880e-21
Identity = 85/249 (34.14%), Postives = 130/249 (52.21%), Query Frame = 2
Query:  107 DPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVI-----EGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLL 835
            D RAG++IC  C +V+G+R ID G+EWRTF+D+ ++   DP R G  AA +PLL+  S ++TVI     E   D+    + Q  + +    S S+RAL ++ F ++     R+ L   + + A  L ++  D    K  K    +AI  A   + CRQ    +T KE+  +  V  K + +  K  L  LE        G+  + + C  LGLPA V  AA H A++A + D+V G  P +VAAAA+ +
Sbjct:   28 DYRAGDMICPHCGLVVGDRVIDVGSEWRTFSDEKADS--DPCRVG--AAENPLLNG-SDLSTVIGRGSGEASFDESGLPKYQNRRTM----SSSDRAL-INAFREINNMADRINLPKTIVDRANNLFKQVHDG---KTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETSVDLITTGDF-MSRFCSNLGLPASVQKAATHIARKAVEADIVPGRSPISVAAAAIYM 262          
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A8K1CU27_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CU27_PYTOL)

HSP 1 Score: 104 bits (259), Expect = 1.070e-20
Identity = 84/281 (29.89%), Postives = 134/281 (47.69%), Query Frame = 2
Query:   53 LGATMFCKECVA--ESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDP---NRCGEC-------AAASPLLSAKSGMNTVIEGGRDQKL------TARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKKLG-NLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLV 838
            +GA  F + C A    D+  D  AG+I+CR C +++GER +DD  EWR FA+D   G  DP   +R GE        A+ +  L      +   EG R  +       +AR++R++G+                AK++E    L L   + E A  +  +AE  G+    +    E++ VAV  + CR+   A+++KE A    +P   + K+   L  NL +E   +   E ++ + C +LGLP    + A   A++A +  L  G  P+AVAA+ V LV
Sbjct:    1 MGAECFTERCGACGSMDVVTDFGAGDIVCRECGLILGERIVDDSPEWRNFANDDRGG--DPAAKSRVGEAMDHRLDSASLTTFLVDTKPSSKGAEGDRPHRRPGLKTESARVRRMEGM---------------LAKIQEVADALALPKVIVEVAMDVYAEAEKKGVSM--RGPEKESMPVAVLFIACRKSGNARSLKEFAAASGIPKNRIGKSFMVLSKNLNLEMTQATT-EEYVRRFCSRLGLPTKTQMIANDVAKKADELGLSTGKSPNAVAASVVYLV 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4T7_9PHAE2.580e-18376.61TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
T1KYS9_TETUR1.060e-2231.37Transcription initiation factor IIB n=1 Tax=Tetran... [more]
A0A6P7VZH4_IXOSC3.400e-2233.21Transcription initiation factor IIB n=24 Tax=Ixodo... [more]
TF2B_DICDI5.540e-2229.12Transcription initiation factor IIB n=1 Tax=Dictyo... [more]
F0ZB51_DICPU6.710e-2229.50Uncharacterized protein gtf2b n=1 Tax=Dictyosteliu... [more]
A0A1D1UXA2_RAMVA1.140e-2132.32Transcription initiation factor IIB n=1 Tax=Ramazz... [more]
A0A8B6EZI2_MYTGA1.200e-2131.66Transcription initiation factor IIB n=3 Tax=Mytilu... [more]
UPI0006B0CFC96.790e-2132.83transcription initiation factor IIB-like n=2 Tax=L... [more]
UPI000C6DCA9B9.880e-2134.14transcription initiation factor IIB-like isoform X... [more]
A0A8K1CU27_PYTOL1.070e-2029.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:683100..688104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNK1
Preferred nameTFIIB
PFAMsTFIIB,TF_Zn_Ribbon
Model size2748
Max annot lvl2759|Eukaryota
KEGG koko:K03124
KEGG Pathwayko03022,ko05169,ko05203,map03022,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000769,GO:0000976,GO:0000977,GO:0000979,GO:0000988,GO:0000990,GO:0000991,GO:0000993,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001098,GO:0001099,GO:0001139,GO:0001173,GO:0001174,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006935,GO:0006949,GO:0007275,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009791,GO:0009856,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009960,GO:0009987,GO:0010035,GO:0010038,GO:0010154,GO:0010183,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010769,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0040008,GO:0040011,GO:0042221,GO:0042330,GO:0043167,GO:0043169,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043565,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0044706,GO:0044877,GO:0045595,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0048316,GO:0048518,GO:0048522,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048856,GO:0048868,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050918,GO:0051123,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051510,GO:0051704,GO:0060255,GO:0060260,GO:0060261,GO:0060284,GO:0061458,GO:0065003,GO:0065004,GO:0065007,GO:0070063,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0080092,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990114,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2000241,GO:2001141
Exons5
Evalue9.63e-166
EggNOG OGsCOG1405@1|root,KOG1597@2759|Eukaryota
Ec32 ortholog descriptionTranscription factor TFIIB
Ec32 orthologEc-01_005140.1
DescriptionTBP-class protein binding
Cds size1116
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.187.4prot_P-littoralis_Contig21.187.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig21 683140..686512 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790024.936375-UTR-P-littoralis_Contig21:683099..6831391680790024.936375-UTR-P-littoralis_Contig21:683099..683139Pylaiella littoralis U1_48UTRP-littoralis_Contig21 683100..683139 +
1680790025.0058389-UTR-P-littoralis_Contig21:686512..6881041680790025.0058389-UTR-P-littoralis_Contig21:686512..688104Pylaiella littoralis U1_48UTRP-littoralis_Contig21 686513..688104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790024.9532018-CDS-P-littoralis_Contig21:683139..6832061680790024.9532018-CDS-P-littoralis_Contig21:683139..683206Pylaiella littoralis U1_48CDSP-littoralis_Contig21 683140..683206 +
1680790024.9620469-CDS-P-littoralis_Contig21:683474..6836121680790024.9620469-CDS-P-littoralis_Contig21:683474..683612Pylaiella littoralis U1_48CDSP-littoralis_Contig21 683475..683612 +
1680790024.972617-CDS-P-littoralis_Contig21:684612..6848181680790024.972617-CDS-P-littoralis_Contig21:684612..684818Pylaiella littoralis U1_48CDSP-littoralis_Contig21 684613..684818 +
1680790024.981853-CDS-P-littoralis_Contig21:685079..6852711680790024.981853-CDS-P-littoralis_Contig21:685079..685271Pylaiella littoralis U1_48CDSP-littoralis_Contig21 685080..685271 +
1680790024.996681-CDS-P-littoralis_Contig21:685999..6865121680790024.996681-CDS-P-littoralis_Contig21:685999..686512Pylaiella littoralis U1_48CDSP-littoralis_Contig21 686000..686512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig21.187.4

>prot_P-littoralis_Contig21.187.4 ID=prot_P-littoralis_Contig21.187.4|Name=mRNA_P-littoralis_Contig21.187.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=372bp
MDRYLGATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWR
TFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGRDQKLTARLQR
LQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDS
GLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAV
KKLGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLV
GGMKPSAVAAAAVLLVCSCWNPAACGSKGNGGGGGGGGSRGGKGGRKQKA
EEDDGSRKQAQEDSLDVGPLAVSAAAGASTNALKRPFRAMYEQRGRLFTV
EFLERRAAQGVTLETLKPALV*
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mRNA from alignment at P-littoralis_Contig21:683100..688104+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig21.187.4 ID=mRNA_P-littoralis_Contig21.187.4|Name=mRNA_P-littoralis_Contig21.187.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=5005bp|location=Sequence derived from alignment at P-littoralis_Contig21:683100..688104+ (Pylaiella littoralis U1_48)
CACACAGCAGAGGAAGGAGCTTCACCAACACGAGAACAACATGGATCGGT ACCTCGGCGCCACGATGTTCTGCAAGGAATGCGTTGCGGAGAGCGATATA TTCGTGGGTGAGTGTCGGCTTGATGAATGCAAAGATGTTGTAAATCGTGT TTCTGTAAAAAAAAAGGTGTTACTGCTGTGGCATGGCGCGCACCGTCAAA TAACCACAACCGCATCTCACTTACACCCTCTGCTGCTTCCATGGCTTCAA TATTCCTCTGAGCGACACTGCATAGCAATGCTGCTGGGATAAGCCACATT CATCTTATGCTTTCCGTATCCTCGTCCGTCGCGTCCGCGTTACTTTTCTG CTTTTTTACTTTTTGTCGCACCCAGATCCGCGGGCCGGAGAGATCATCTG CCGGACTTGTGCCGTGGTAATAGGGGAGCGATGCATCGACGATGGGGCGG AGTGGCGAACGTTCGCTGACGACAGCAGCAACGGCAGGGACGACCCCAAC CGCTGCGGTGAGTGTTTCATTGCATTTCTTCAGGATCTCGCCTCGATCCG CAGAGCTTTGTGCAGGCAGCACTTGGGCGGAACAATACGAACGGTATGTC GCCCCTGGGAACATCAACATTCATATGATATGATATCATTTTCATACCAG GAACATGACCTTACCGCTGTGTAAATGGCATGTACCATGGTGTGATACTG CTGTACTGCTGTCGTGAGCATGTATTCTTGTGTTACACTTCGAAGCAGAT GTTTCATGACTTTACCTCGAGAAAGAAGCATGGAACGGTGTCTGGAGACG CTCCTGCTCCCAGCCGACATGGCATACCTTTGACTTGAATTACCGCCGGG TAGAGCGGCAGCTCAGGCGGCCATGCCTGTACCTTAATCCGCGTAAACAG GCCGTCAGTGTCAGATCAGAATCCCATCGGGCAAGTGCTCCACGGCAGAA CTAACTCCTCGGATAGGCTTTTCGGGGATGCTATCATACACACTTTGCGA AATGTATTTTGCGATCGGTTTGTCGTGTACCGCTGCACTGAAGTGCTACT GTTGTTGACGGTAATACCTATCGTATCGCACTGCTGTTGGTTTGAGATGG AAATGGAGAGATGGAGCCTTACCCATGCCGAACAAGAGCTGGGTCTCTCA ATCTCGCACAAATCCCCCTCAGGCACCGCAATTTCAGTCAAATCACGCCG TTTCGCAGTTTGTAATATCTGTGTGCGATTCACCCCGCACGTGTATGATA TCATACCCAGAAAGCACCTGACACGACGAAGTAAGTACATATGCAGATCA TGCAATCAAAGGCGTTTTTTTCGCCGCCGCGTTCATGACAATGACAACGC ACAACATACACACTTATTTCCAGTTGCTTATTTCGACACGTGAACAGTAG TGAAGTACTTCGAGTACTGCGAAGTGCAGGAACTGATGTAATACATAACG ATACAAAACGTCTCTGTACCTAACCGTCGCGCCTCTCTCTCTCTCTCTCT TGTCTGCTCTCAGGCGCCGCGGCGAGCCCCCTCCTTTCCGCCAAGTCCGG CATGAACACCGTCATCGAGGGCGGGAGAGACCAGAAGCTGACCGCAAGGC TGCAGAGGCTGCAGGGTATCGCCGTCAGGGAGTCTAAGTCGGAGAGGGCT CTCAAAGTCGACTTCTTCGCCAAAGTGCGCGAATTCGGGCACAGACTGGG CCTCACGCATGCGATGCAGGTGCGTGGGTTGGGTTTGGGGTTTAGGTTTT TGGTTGGGTTGACGGTGTGCAGGTGTTTGGGTGATGGGTGGAACAGTAGT CGCTGTGCATGGATGCGTGTGGGTACAAGCAGTGCTTTCAAGTATCTTTT TCAGGCTGCCCGATAATCATGATTGTTAATTTGTCTCTTTGTTTTTTTAT GCACGATCGATCTTGCTTGAATGCCGATGCGCCTTGTTTGTTGTCTGTTG CTTTTTAATTTGTTTTGGATGTGATTTCAGGAGGACGCGTGCCTGCTGCT GAGAAAGGCGGAGGACAGTGGGCTGTTCAAGTTCAAGAAGGCCGAGCGCG GCGAGGCCATCTGCGTGGCGGTGACGCTCCTCACGTGCCGCCAGTGGCGG AGGGCCCAGACTATGAAGGAGATGGCCACGATCTTCAACGTGCCGATGAA AGCCCTCAACAAGGCCGTCAAAGTGAGTGTTGCGGGGGGGGGGGGGGGGG GGTTGGCGTATAGTGCAGTGTACTCGAAGACGGTTTGGCGCCGCGAGTTG AGGCATATACTGGTACATATCTACATTGCCGATTGAGGATGCGGTGTCTG TGTTGCGATGTTCCACCTCGAGTTTCCCTCGTGATTTTTGTGTGATTCGG TTAAGTTCGCTTCCGCGGTATTATATGCTGTATGCGTGCAACTCCACGAG GTGGGTTGTTTGAGTCGCAAGCAGGGATGGACGAGCACAGGCAGATACGG TGCCATCGAGAATGAGTGATGGCTGCAACACAGCTTTGATCCAGCTAAAA TACATGACCAAAAAGCGGTTAGATCGCTCTCTCTTTTCACCTTTCCTCCG TGGAGGCATGTTCTCGACCAACAAGCACTTAGATCGCTCTGTTTCTCACC TTTCCTCCATGGAGGCATGTCCAGGCGGTTGTGTTCACTGCTACTCTACT TTTCTTTGGTATGTAGGATCCACGACGCAAAGGGAGCATGCATGTTTGCA TTCAAAGAGCGTGTGGATTTAAGTATTTTAATATTTTTTCGCGAATGACT CGACGTCAATACACACCCTGAAACAGCTGCCGGCAGAAACTGAGCTCAAC CCTTGCTCCCCCCTCCGCCCCCGCCCCCGCCCCCCCCCCCTCTTCCCCCC CCGCGGCTCGCGGCCCGCCTCCGCCTTTCTGTCTGTAACACCTCACGCAG AAACTGGGCAACTTGGAGATCGAAAAGGGGCCGTCCCTCCGAGGGGAGCA CCACATCCCGCAGCTCTGCGACAAGCTCGGTTTGCCGGCGTTCGTCTCCG TGGCGGCCAAGCACGCAGCGCAGCAGGCGAGCAAGTGGGACCTAGTGGGG GGTATGAAGCCCTCGGCGGTGGCTGCGGCGGCGGTGCTCTTGGTTTGCTC CTGCTGGAACCCCGCCGCTTGCGGCAGCAAGGGTAACGGCGGCGGTGGAG GTGGTGGTGGTTCGAGGGGAGGGAAAGGGGGGAGAAAACAGAAGGCGGAG GAGGACGATGGTTCGAGGAAGCAGGCACAGGAGGATTCGTTGGATGTCGG GCCGTTGGCGGTGTCGGCGGCGGCGGGTGCATCGACCAACGCCCTGAAGC GACCGTTTCGGGCGATGTACGAGCAGCGGGGGCGGTTGTTCACGGTGGAG TTCTTGGAGAGGCGCGCGGCACAAGGGGTAACGCTGGAGACGCTGAAGCC GGCCTTGGTATGATGGACGGATTTGGCACTGCACGGTCGAGGGAAATAAA GGAGCTCACACTTTTGTCTCCCCGATGTCTTAGCGGTGAGAGGCGAGAAG GAGTGGCGGGGTATCAACGGATAGCGGAGGTTTTTTTTCCACTTGTGGAC TACAACGTTTTTCGCATCTGTCTCGTGACCGTTTGTGGTGGCGTATCTGC TCTTGCTTTTACAGAGTGGGCGCGAATGGTTCTAAGACATGAAGGGGCAG CGTGGCGGCGGGGGTTGTTACTGTGGCGGCGTTGGCTTGGATGTGTGGTT TGTGACACCCCCCTCCCCTCCAACCGCAAAGCTTTCCCATCCTTTCCTGC TCTATACTTTTAAGTATTGTTTATTGGATAGAACTGCTGTCGGTGGATTT TCTTTTCCAGGCTTCAAGGGTGTGACTGACTGGGCTGCTGTCGAACCTTT TGGCCGAACAGTATGAAAGGCAAGTAGATGCTTCGACGACCCCCCCCCCC CCCCTCCTCCTCTCACATGCACATACAGTACACACATACACCCACGAAAG TCTGGCCGAATGGCGTGCCCTAGAGGCACCATAATTGTTAGCGATCGACT TTTTTTGTCTATGATAGGCGAGGGGGGATGGAGGGCCAGAGGCGGGGGCC GGACTGCGGGATCAGGACCATTTTGTTTAAGGTTCCCTCCCCCACCGGGC GTCAGGTGGCGAAAGATACTGGCTGCGCTTTACCTGCGGGGTTATAGGGC GTGGTGCAGAACACGGGAAAGAGGGGGGGCTGTATATTGCGATAGGAGGG CTTCGAAGGGAATGCCGCATATAGCTCGTCCGCTGTGTGAAAAACAGCGG CGGCGGCGTTCTTCCTCTCACTCACCCCATCCTCTCTTCCGATTGGTCTG CCGAGTTGGCTTTCGTGGCATCCGTTCGAAGTCGACTTGGATATCTCGGC CCGCCAACCCCGTTTATTGCGCCCTCCTGGCCAATAGGTTCCCAACTTGA ACATGGGTGAACCCCATGGGAAAGCAGGAAGAAAAGGTCTCGATGTAGTA GAGCAACAGAGCGGAAATTTCCACCATGGAACAATTTTCGGTATTTCGAT TTGCTGTGATGTCTCGTTGTGTTTAATTGGTCTTGTGTGCGTGCGTTTGT CTGATGCTGTTTTGGCCGTGTTTGTTTGCGTACGTGTGTACGTGTTGCCG AAAGGGTAGATTGTAAATTACTTTGCCCTTATCCCGCAGCTTGGTAGATT TATAAGAAAAAAATCCTCTCCCAATACTCCCAAAGCATCCAAATGAAACA AAAAAATCAGCCGCACTTTGCTCTCTCTTAAAATTGATGTTCCCTATGAA ATATGAAAATTGTTCGCGACGAGTAGTCGCATGAAACATTTTTTTCAGGA ACCGTTTTTTTATACATAAGGAGGCGGTGGTTTTTGTTGTTGTTGGGAAC ATTGAGAGACGGTAACGGTTCGGGATGCGATGAGTCAATTGAATTGACGT CATCCCCTGCCACAATTTGGAATACGCCCCTTGGGGTTACTACTCGGTTA ATGTGTGTGTGTTGGGTTGTTGCGGTGTTCTTTTTTCCAACGTTGCGCTC AGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig21:683100..688104+

>mRNA_P-littoralis_Contig21.187.4 ID=mRNA_P-littoralis_Contig21.187.4|Name=mRNA_P-littoralis_Contig21.187.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1116bp|location=Sequence derived from alignment at P-littoralis_Contig21:683100..688104+ (Pylaiella littoralis U1_48)
ATGGATCGGTACCTCGGCGCCACGATGTTCTGCAAGGAATGCGTTGCGGA
GAGCGATATATTCGTGGATCCGCGGGCCGGAGAGATCATCTGCCGGACTT
GTGCCGTGGTAATAGGGGAGCGATGCATCGACGATGGGGCGGAGTGGCGA
ACGTTCGCTGACGACAGCAGCAACGGCAGGGACGACCCCAACCGCTGCGG
TGAGTGCGCCGCGGCGAGCCCCCTCCTTTCCGCCAAGTCCGGCATGAACA
CCGTCATCGAGGGCGGGAGAGACCAGAAGCTGACCGCAAGGCTGCAGAGG
CTGCAGGGTATCGCCGTCAGGGAGTCTAAGTCGGAGAGGGCTCTCAAAGT
CGACTTCTTCGCCAAAGTGCGCGAATTCGGGCACAGACTGGGCCTCACGC
ATGCGATGCAGGAGGACGCGTGCCTGCTGCTGAGAAAGGCGGAGGACAGT
GGGCTGTTCAAGTTCAAGAAGGCCGAGCGCGGCGAGGCCATCTGCGTGGC
GGTGACGCTCCTCACGTGCCGCCAGTGGCGGAGGGCCCAGACTATGAAGG
AGATGGCCACGATCTTCAACGTGCCGATGAAAGCCCTCAACAAGGCCGTC
AAAAAACTGGGCAACTTGGAGATCGAAAAGGGGCCGTCCCTCCGAGGGGA
GCACCACATCCCGCAGCTCTGCGACAAGCTCGGTTTGCCGGCGTTCGTCT
CCGTGGCGGCCAAGCACGCAGCGCAGCAGGCGAGCAAGTGGGACCTAGTG
GGGGGTATGAAGCCCTCGGCGGTGGCTGCGGCGGCGGTGCTCTTGGTTTG
CTCCTGCTGGAACCCCGCCGCTTGCGGCAGCAAGGGTAACGGCGGCGGTG
GAGGTGGTGGTGGTTCGAGGGGAGGGAAAGGGGGGAGAAAACAGAAGGCG
GAGGAGGACGATGGTTCGAGGAAGCAGGCACAGGAGGATTCGTTGGATGT
CGGGCCGTTGGCGGTGTCGGCGGCGGCGGGTGCATCGACCAACGCCCTGA
AGCGACCGTTTCGGGCGATGTACGAGCAGCGGGGGCGGTTGTTCACGGTG
GAGTTCTTGGAGAGGCGCGCGGCACAAGGGGTAACGCTGGAGACGCTGAA
GCCGGCCTTGGTATGA
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