mRNA_P-littoralis_Contig21.187.4 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A6H5L4T7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4T7_9PHAE) HSP 1 Score: 541 bits (1394), Expect = 2.580e-183 Identity = 285/372 (76.61%), Postives = 315/372 (84.68%), Query Frame = 2
Query: 41 MDRYLGATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKKLGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLVCSCWNPAACGSKGNXXXXXXXXXXXXXXXXXXXAEEDDGSRKQAQE-DSLDVGPLAVSAAAGASTNALKRPFRAMYEQRGRLFTVEFLERRAAQGVTLETLKPALV 1153
MDRY+G+TMFCKECVAESDI+VDPRAGEIICRTCAVVIGERCIDDGAEW+T+A+DS+NGR DPNRCG AAASPLLSAKSGMNT+IEGG+D KLTA+LQ+LQG+AV+ES SERALK+DFF KVREFG+RLGLTHAMQE ACLLLRKAEDSGLFK KKAERG AICVAVTLLTCRQWRR QTMKEM+T+FNV +KALNKAVKKL NLEIE+ PSLRGEHHIP LCDKLGLP FVSVAA+HAAQQAS+WDLV GMKPSAVAAAAVLLVCSCWNPAACG A + ++ A E ++ DV P AVS A G + A+KRPFRAMYEQRGRLFTVEFLERRAA+ VTLETLKP L+
Sbjct: 1 MDRYMGSTMFCKECVAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYAEDSNNGRADPNRCG--AAASPLLSAKSGMNTLIEGGQDSKLTAKLQKLQGMAVKESASERALKMDFFGKVREFGNRLGLTHAMQEHACLLLRKAEDSGLFKVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFNVSLKALNKAVKKLSNLEIERAPSLRGEHHIPLLCDKLGLPPFVSVAARHAAQQASRWDLVDGMKPSAVAAAAVLLVCSCWNPAACGD-------------GVVDRRSKKARKTQQQQQAAVEGETWDVRPAAVSEAGGTTVMAMKRPFRAMYEQRGRLFTVEFLERRAAKEVTLETLKPILM 357
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: T1KYS9_TETUR (Transcription initiation factor IIB n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KYS9_TETUR) HSP 1 Score: 110 bits (274), Expect = 1.060e-22 Identity = 85/271 (31.37%), Postives = 142/271 (52.40%), Query Frame = 2
Query: 50 YLGATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVI------EGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLVC 841
Y A + C+E ++ + D RAG++IC C +V+G+R ID G+EWRTF+++ +N DP+R G AA +PL+ + ++T+I G K +++ Q S SER+L ++ F ++ + ++ L + E A LL ++ DS + K +AI A ++CRQ +T KE+ + V K + + K L LE G+ + + C LGL + + AA H A++A + D+V G P +VAAAA+ + C
Sbjct: 3 YRKAKIGCREH-PDATLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKANA--DPSRVG--AAENPLME-NNDLSTIIARAEPNSSGEGFKYSSKKQM--------SSSERSL-LNGFKEISDMADKINLAKTIVERANLLFKQVHDS---RTTKGRSNDAIASACLYISCRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETNVDTITTGDFMV-RFCSNLGLSSAIQKAATHIARKAVELDIVPGRSPISVAAAAIYMAC 254
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A6P7VZH4_IXOSC (Transcription initiation factor IIB n=24 Tax=Ixodoidea TaxID=297308 RepID=A0A6P7VZH4_IXOSC) HSP 1 Score: 108 bits (271), Expect = 3.400e-22 Identity = 88/265 (33.21%), Postives = 139/265 (52.45%), Query Frame = 2
Query: 59 ATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGR-----DQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLL 835
A +FC + ++ + D RAG++IC C +V+G+R +D G EWR F ++ SN +DP R G A+ +PLL+ S + T+I G D+ TA+ Q + + S S+RAL V+ F ++ R+ LT + + + LL ++ D K K +AI A + CRQ +T KE+ + V K + + K L LE G+ + + C LGLP+ V AA H A++A + D+V G P +VAAAA+ +
Sbjct: 10 ARVFCPDH-PDAALVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSN--NDPARVG--ASENPLLNG-SDLATMIGKGTGDASFDESGTAKYQNRKTM----SSSDRAL-VNAFREISNMADRINLTKTIVDRSNLLFKQVHDG---KTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETSVDLITTGDF-MSRFCSNLGLPSSVQKAATHIARKAVELDVVSGRSPISVAAAAIYM 259
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: TF2B_DICDI (Transcription initiation factor IIB n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=TF2B_DICDI) HSP 1 Score: 108 bits (270), Expect = 5.540e-22 Identity = 76/261 (29.12%), Postives = 124/261 (47.51%), Query Frame = 2
Query: 65 MFCKEC-VAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKKLGNL--EIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLV 838
++C C + + DI D G++ICR C VV+G+R +D+ +EWRTF++ S G D PNR G +PLL + TV +G +D RLQ + + A K ++ + L +Q+ A L R +D K K + + A + CRQ ++T KE+A + NVP K +++ K + + ++ E + C L LP V A+H ++ A +V G P +V AA++ +V
Sbjct: 21 LWCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGAD-PNRVG--GPINPLLRDSALSTTVGKGSKDSGTLTRLQNKSALGTGDRNLLAAFK-----EIGRMADHMNLPQTVQDRANELFRFMDDK---KSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEISRCYKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMDMGIVAGKSPISVTAASIYMV 270
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: F0ZB51_DICPU (Uncharacterized protein gtf2b n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZB51_DICPU) HSP 1 Score: 108 bits (271), Expect = 6.710e-22 Identity = 77/261 (29.50%), Postives = 125/261 (47.89%), Query Frame = 2
Query: 65 MFCKEC-VAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKKLGNL--EIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLV 838
++CK C V + DI D G++ICR C VV+G+R +D+ +EWRTF++ S G D PNR G +PLL + T+ +G RD RLQ + + A K ++ + L +Q+ A L R +D K K + + A + CRQ ++T KE+A + NVP K +++ K + + ++ E + C L LP V ++H ++ A +V G P +V AA++ +V
Sbjct: 46 LWCKICRVNDPDIIEDYAKGDLICRECGVVVGDRIVDEHSEWRTFSNSESTGAD-PNRVG--GPINPLLRDSALSTTIGKGSRDSSSLNRLQNKSALGTGDRNLLAAFK-----EIGRMADHMNLPQTVQDRANELFRFMDDK---KSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEISRCYKIMKETFSSVLNLQTISTEDFTSRFCSTLKLPIEVKKISEHVSKTAMDMGIVAGKSPISVTAASIYMV 295
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A1D1UXA2_RAMVA (Transcription initiation factor IIB n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UXA2_RAMVA) HSP 1 Score: 107 bits (267), Expect = 1.140e-21 Identity = 85/263 (32.32%), Postives = 134/263 (50.95%), Query Frame = 2
Query: 89 ESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCG-------ECAAASPLLSAKSGMNTVIEGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERG---EAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLVCS 844
E+ + D RAG+++C C +V+G+R ID G EWRTF+++S G DDP+R G E A S ++ A SG G D + + + + I S +RAL F ++ R+ + ++ + A +L ++ ++ KA RG EAI A + CR+ +T KE+ I V K + + K L N++ G++ + + C LGLP V AA H A++A+ DL GG P+ VAAAA+ L C+
Sbjct: 18 EAILVEDYRAGDLVCPMCGLVVGDRVIDVGTEWRTFSNES--GGDDPSRVGGPENPLFEGAELSTMIGAASG-----PAGLDSQGFNKYRNRKTI----SPQDRALTTGF-REITTMAERINMARSIVDQAHMLFKQVYET------KAMRGRATEAIASACLYIACRKEGVPRTFKEICAISRVTKKEIGRCFKLILRNVDTSVDLITTGDY-MSRFCSNLGLPQTVQRAATHIARKATDMDLAGGRAPTTVAAAAIFLACA 261
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A8B6EZI2_MYTGA (Transcription initiation factor IIB n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EZI2_MYTGA) HSP 1 Score: 107 bits (267), Expect = 1.200e-21 Identity = 82/259 (31.66%), Postives = 128/259 (49.42%), Query Frame = 2
Query: 92 SDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVI----------EGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLL 835
+++ D AG++IC C +V+G+R +D G EWRTF+++ S G DP+R G AA +PLL ++T+I E G+ R S ++RAL ++ F ++ G RL L + + A L ++ D K K +AI A + CRQ +T KE+ + + K + + K L NLE G+ + + C LGLP V AA H A++A + DLV G P +VAA+A+ +
Sbjct: 21 ANLVEDYHAGDMICPECGLVVGDRVVDVGTEWRTFSNEKSTGNKDPSRVG--AAENPLLDG-GDLSTMIQVDPTSMSYDEHGKPMYKNRRTM---------SSADRAL-INAFREIGNMGDRLNLPKMIADRANNLFKQVNDG---KALKGRSNDAIAAACMYIACRQEGVPRTFKEICAVSKISKKEIGRVFKLILKNLETNVELITTGDF-MSRFCSNLGLPTSVQKAATHIARKAVEMDLVAGRSPISVAASAIYM 262
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: UPI0006B0CFC9 (transcription initiation factor IIB-like n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0CFC9) HSP 1 Score: 105 bits (261), Expect = 6.790e-21 Identity = 87/265 (32.83%), Postives = 135/265 (50.94%), Query Frame = 2
Query: 59 ATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVIEGGR-----DQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLL 835
A +FC ++ + D RAG++IC C +VIG+R +D G EWRTF ++ S +DP R G AA +PLL+ S ++TV+ G D+ A+ Q + + S S+RAL + F ++ R+ LT + + A L ++ D K K +AI + + CRQ +T KE+ + V K + + K L LE G+ + + C LGLP V AA H A++A + D+V G P +VAAAA+ +
Sbjct: 9 AKIFCP-AHPDAPLIEDYRAGDMICPECGLVIGDRVVDVGTEWRTFNNEKST--NDPTRVG--AAENPLLNG-SDLSTVVGRGTGDASFDESGVAKYQNRRTM----SSSDRAL-TNAFREINNMADRINLTKTIVDRANSLFKQVHDG---KTLKGRSNDAIASSCLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETSVDLITTGDF-MSRFCSNLGLPNTVQRAATHIARKAVELDIVPGRSPISVAAAAIYM 258
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: UPI000C6DCA9B (transcription initiation factor IIB-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DCA9B) HSP 1 Score: 104 bits (260), Expect = 9.880e-21 Identity = 85/249 (34.14%), Postives = 130/249 (52.21%), Query Frame = 2
Query: 107 DPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDPNRCGECAAASPLLSAKSGMNTVI-----EGGRDQKLTARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKK-LGNLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLL 835
D RAG++IC C +V+G+R ID G+EWRTF+D+ ++ DP R G AA +PLL+ S ++TVI E D+ + Q + + S S+RAL ++ F ++ R+ L + + A L ++ D K K +AI A + CRQ +T KE+ + V K + + K L LE G+ + + C LGLPA V AA H A++A + D+V G P +VAAAA+ +
Sbjct: 28 DYRAGDMICPHCGLVVGDRVIDVGSEWRTFSDEKADS--DPCRVG--AAENPLLNG-SDLSTVIGRGSGEASFDESGLPKYQNRRTM----SSSDRAL-INAFREINNMADRINLPKTIVDRANNLFKQVHDG---KTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSKVSKKEIGRCFKLILKALETSVDLITTGDF-MSRFCSNLGLPASVQKAATHIARKAVEADIVPGRSPISVAAAAIYM 262
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Match: A0A8K1CU27_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CU27_PYTOL) HSP 1 Score: 104 bits (259), Expect = 1.070e-20 Identity = 84/281 (29.89%), Postives = 134/281 (47.69%), Query Frame = 2
Query: 53 LGATMFCKECVA--ESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRTFADDSSNGRDDP---NRCGEC-------AAASPLLSAKSGMNTVIEGGRDQKL------TARLQRLQGIAVRESKSERALKVDFFAKVREFGHRLGLTHAMQEDACLLLRKAEDSGLFKFKKAERGEAICVAVTLLTCRQWRRAQTMKEMATIFNVPMKALNKAVKKLG-NLEIEKGPSLRGEHHIPQLCDKLGLPAFVSVAAKHAAQQASKWDLVGGMKPSAVAAAAVLLV 838
+GA F + C A D+ D AG+I+CR C +++GER +DD EWR FA+D G DP +R GE A+ + L + EG R + +AR++R++G+ AK++E L L + E A + +AE G+ + E++ VAV + CR+ A+++KE A +P + K+ L NL +E + E ++ + C +LGLP + A A++A + L G P+AVAA+ V LV
Sbjct: 1 MGAECFTERCGACGSMDVVTDFGAGDIVCRECGLILGERIVDDSPEWRNFANDDRGG--DPAAKSRVGEAMDHRLDSASLTTFLVDTKPSSKGAEGDRPHRRPGLKTESARVRRMEGM---------------LAKIQEVADALALPKVIVEVAMDVYAEAEKKGVSM--RGPEKESMPVAVLFIACRKSGNARSLKEFAAASGIPKNRIGKSFMVLSKNLNLEMTQATT-EEYVRRFCSRLGLPTKTQMIANDVAKKADELGLSTGKSPNAVAASVVYLV 261 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.187.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig21.187.4 >prot_P-littoralis_Contig21.187.4 ID=prot_P-littoralis_Contig21.187.4|Name=mRNA_P-littoralis_Contig21.187.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=372bp MDRYLGATMFCKECVAESDIFVDPRAGEIICRTCAVVIGERCIDDGAEWRback to top mRNA from alignment at P-littoralis_Contig21:683100..688104+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig21.187.4 ID=mRNA_P-littoralis_Contig21.187.4|Name=mRNA_P-littoralis_Contig21.187.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=5005bp|location=Sequence derived from alignment at P-littoralis_Contig21:683100..688104+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig21:683100..688104+ >mRNA_P-littoralis_Contig21.187.4 ID=mRNA_P-littoralis_Contig21.187.4|Name=mRNA_P-littoralis_Contig21.187.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1116bp|location=Sequence derived from alignment at P-littoralis_Contig21:683100..688104+ (Pylaiella littoralis U1_48)back to top |