mRNA_P-littoralis_Contig198.18.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE) HSP 1 Score: 203 bits (517), Expect = 6.020e-58 Identity = 100/141 (70.92%), Postives = 116/141 (82.27%), Query Frame = 1
Query: 1 NNNVIGLDIEWEISAAGAPVNPPATIQVAAGKVVVIFHVLHGQRVVPGELPGELVELLEDDKATKKWIGIKGDCTKLANAYGVQAVRVVDLRSLAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQK 423
NN ++ LDIEWEISAAGAP NPPATIQ+AAGK VVIFHVLHGQR VP ELP LV+LLED K TK +GIKGDCT+L + YGV+ VDLRSLAVERKVE+GLR+GLADLC +LLG LPKD +VR+S+WN +LS +QK
Sbjct: 250 NNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQK 390
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 4.560e-13 Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 1
Query: 7 NVIGLDIEWEISAAGAPVNPPATIQVAAGKVVVIFHVLH---GQRVVPGELPGELVELLEDDKATKKWIGIK--GDCTKLANAYGVQAVRVVDLRSLAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQ 420
+V+GLD EWE + GA NP +T+Q++ LH + +P L LLE+ +++++G+ D + L YGV+ ++D+R+ A E VE R LA + L+G +LPKD ++R+SRW+ L+ EQ
Sbjct: 153 DVLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFHLHRRTNRATATSTIPKVLQSLLEN-VPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETSSRS-LAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQ 293
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 4.190e-7 Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1
Query: 280 LAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQK 423
+AVERKVE+ R+GLADLC LL LPKD VR+S+WN +LS +QK
Sbjct: 1 MAVERKVELWFRRGLADLCVNLLEKQLPKDPIVRLSKWNKLDLSDDQK 48
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A8H7UST7_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7UST7_9FUNG) HSP 1 Score: 54.7 bits (130), Expect = 7.090e-6 Identity = 35/119 (29.41%), Postives = 54/119 (45.38%), Query Frame = 1
Query: 64 PPATIQVAAGKVVVIFHVLHGQRVVPGELPGELVELLEDDKATKKWIGIKGDCTKLANAYGVQAVRVVDLRSLAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQ 420
P A +Q+A G V + + LP L+++L D K K + GD T+ Q ++L + ++ + LAD+CG++L V LPK + VR W LS EQ
Sbjct: 551 PIALVQIAYGNSVYLMRI---HSFASNNLPENLIKILTDTKIAKIGKNVSGDLTRFRYFGLQQCPGQLELGTFCKDKDLIERRNTSLADICGFVLKVQLPKANFVRCGNWEAPILSEEQ 666
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A8H7QKA6_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QKA6_9FUNG) HSP 1 Score: 52.4 bits (124), Expect = 4.280e-5 Identity = 41/147 (27.89%), Postives = 66/147 (44.90%), Query Frame = 1
Query: 13 IGLDIEWEISAAGAPVN----------PPATIQVAAGKVVVIFHVLHGQRVVPGELPGELVELLEDDKATKKWIGIKGDCTKLANAYGVQAVR-VVDLRSLAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQ 420
IG D EW + + P A +Q+A V +F + + P +LP LV++L D K K I D + +G+Q ++L + ++ + + LAD+CG++L V LPK + +R W LS EQ
Sbjct: 317 IGFDCEWAFRVGNSARSRSDQTRLRFVPVALVQIAFRNTVSLFRI---HSLQPEQLPQNLVKVLTDSKIVKIGKNISEDLLRF-RYFGLQIFPGQLELGTFCKDKDL-IERSFSLADVCGFVLKVQLPKKNLIRWGNWEAENLSEEQ 458 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig198.18.1 >prot_P-littoralis_Contig198.18.1 ID=prot_P-littoralis_Contig198.18.1|Name=mRNA_P-littoralis_Contig198.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp NNNVIGLDIEWEISAAGAPVNPPATIQVAAGKVVVIFHVLHGQRVVPGELback to top mRNA from alignment at P-littoralis_Contig198:85297..85725+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig198.18.1 ID=mRNA_P-littoralis_Contig198.18.1|Name=mRNA_P-littoralis_Contig198.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig198:85297..85725+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig198:85297..85725+ >mRNA_P-littoralis_Contig198.18.1 ID=mRNA_P-littoralis_Contig198.18.1|Name=mRNA_P-littoralis_Contig198.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig198:85297..85725+ (Pylaiella littoralis U1_48)back to top |