prot_P-littoralis_Contig198.18.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig198.18.1
Unique Nameprot_P-littoralis_Contig198.18.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length143
Homology
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 6.020e-58
Identity = 100/141 (70.92%), Postives = 116/141 (82.27%), Query Frame = 0
Query:    1 NNNVIGLDIEWEISAAGAPVNPPATIQVAAGKVVVIFHVLHGQRVVPGELPGELVELLEDDKATKKWIGIKGDCTKLANAYGVQAVRVVDLRSLAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQK 141
            NN ++ LDIEWEISAAGAP NPPATIQ+AAGK VVIFHVLHGQR VP ELP  LV+LLED K TK  +GIKGDCT+L + YGV+    VDLRSLAVERKVE+GLR+GLADLC +LLG  LPKD +VR+S+WN  +LS +QK
Sbjct:  250 NNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQK 390          
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.560e-13
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 0
Query:    3 NVIGLDIEWEISAAGAPVNPPATIQVAAGKVVVIFHVLH---GQRVVPGELPGELVELLEDDKATKKWIGIK--GDCTKLANAYGVQAVRVVDLRSLAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQ 140
            +V+GLD EWE +  GA  NP +T+Q++          LH    +      +P  L  LLE+   +++++G+    D + L   YGV+   ++D+R+ A E  VE   R  LA +   L+G +LPKD ++R+SRW+   L+ EQ
Sbjct:  153 DVLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFHLHRRTNRATATSTIPKVLQSLLEN-VPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETSSRS-LAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQ 293          
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.190e-7
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0
Query:   94 LAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQK 141
            +AVERKVE+  R+GLADLC  LL   LPKD  VR+S+WN  +LS +QK
Sbjct:    1 MAVERKVELWFRRGLADLCVNLLEKQLPKDPIVRLSKWNKLDLSDDQK 48          
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A8H7UST7_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7UST7_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 7.090e-6
Identity = 35/119 (29.41%), Postives = 54/119 (45.38%), Query Frame = 0
Query:   22 PPATIQVAAGKVVVIFHVLHGQRVVPGELPGELVELLEDDKATKKWIGIKGDCTKLANAYGVQAVRVVDLRSLAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQ 140
            P A +Q+A G  V +  +          LP  L+++L D K  K    + GD T+       Q    ++L +   ++ +       LAD+CG++L V LPK + VR   W    LS EQ
Sbjct:  551 PIALVQIAYGNSVYLMRI---HSFASNNLPENLIKILTDTKIAKIGKNVSGDLTRFRYFGLQQCPGQLELGTFCKDKDLIERRNTSLADICGFVLKVQLPKANFVRCGNWEAPILSEEQ 666          
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A8H7QKA6_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QKA6_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 4.280e-5
Identity = 41/147 (27.89%), Postives = 66/147 (44.90%), Query Frame = 0
Query:    5 IGLDIEWEISAAGAPVN----------PPATIQVAAGKVVVIFHVLHGQRVVPGELPGELVELLEDDKATKKWIGIKGDCTKLANAYGVQAVR-VVDLRSLAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQ 140
            IG D EW      +  +          P A +Q+A    V +F +     + P +LP  LV++L D K  K    I  D  +    +G+Q     ++L +   ++ + +     LAD+CG++L V LPK + +R   W    LS EQ
Sbjct:  317 IGFDCEWAFRVGNSARSRSDQTRLRFVPVALVQIAFRNTVSLFRI---HSLQPEQLPQNLVKVLTDSKIVKIGKNISEDLLRF-RYFGLQIFPGQLELGTFCKDKDL-IERSFSLADVCGFVLKVQLPKKNLIRWGNWEAENLSEEQ 458          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE6.020e-5870.923'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JCK3_9PHAE4.560e-1333.573'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE4.190e-760.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8H7UST7_9FUNG7.090e-629.413'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A8H7QKA6_9FUNG4.280e-527.893'-5' exonuclease domain-containing protein n=1 Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..142
e-value: 8.4E-31
score: 109.0
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 3..137
e-value: 4.6E-8
score: 33.0
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 3..140
NoneNo IPR availablePANTHERPTHR13620:SF65OS01G0660800 PROTEINcoord: 3..140
NoneNo IPR availableCDDcd06141WRN_exocoord: 4..141
e-value: 1.38311E-36
score: 121.531
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..140

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig198contigP-littoralis_Contig198:85297..85725 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig198.18.1mRNA_P-littoralis_Contig198.18.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig198 85297..85725 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig198.18.1 ID=prot_P-littoralis_Contig198.18.1|Name=mRNA_P-littoralis_Contig198.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
NNNVIGLDIEWEISAAGAPVNPPATIQVAAGKVVVIFHVLHGQRVVPGEL
PGELVELLEDDKATKKWIGIKGDCTKLANAYGVQAVRVVDLRSLAVERKV
EVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQKM*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR0025623'-5'_exonuclease_dom
IPR012337RNaseH-like_sf