mRNA_P-littoralis_Contig198.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig198.18.1
Unique NamemRNA_P-littoralis_Contig198.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 6.020e-58
Identity = 100/141 (70.92%), Postives = 116/141 (82.27%), Query Frame = 1
Query:    1 NNNVIGLDIEWEISAAGAPVNPPATIQVAAGKVVVIFHVLHGQRVVPGELPGELVELLEDDKATKKWIGIKGDCTKLANAYGVQAVRVVDLRSLAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQK 423
            NN ++ LDIEWEISAAGAP NPPATIQ+AAGK VVIFHVLHGQR VP ELP  LV+LLED K TK  +GIKGDCT+L + YGV+    VDLRSLAVERKVE+GLR+GLADLC +LLG  LPKD +VR+S+WN  +LS +QK
Sbjct:  250 NNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQK 390          
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.560e-13
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 1
Query:    7 NVIGLDIEWEISAAGAPVNPPATIQVAAGKVVVIFHVLH---GQRVVPGELPGELVELLEDDKATKKWIGIK--GDCTKLANAYGVQAVRVVDLRSLAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQ 420
            +V+GLD EWE +  GA  NP +T+Q++          LH    +      +P  L  LLE+   +++++G+    D + L   YGV+   ++D+R+ A E  VE   R  LA +   L+G +LPKD ++R+SRW+   L+ EQ
Sbjct:  153 DVLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFHLHRRTNRATATSTIPKVLQSLLEN-VPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETSSRS-LAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQ 293          
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.190e-7
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1
Query:  280 LAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQK 423
            +AVERKVE+  R+GLADLC  LL   LPKD  VR+S+WN  +LS +QK
Sbjct:    1 MAVERKVELWFRRGLADLCVNLLEKQLPKDPIVRLSKWNKLDLSDDQK 48          
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A8H7UST7_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7UST7_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 7.090e-6
Identity = 35/119 (29.41%), Postives = 54/119 (45.38%), Query Frame = 1
Query:   64 PPATIQVAAGKVVVIFHVLHGQRVVPGELPGELVELLEDDKATKKWIGIKGDCTKLANAYGVQAVRVVDLRSLAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQ 420
            P A +Q+A G  V +  +          LP  L+++L D K  K    + GD T+       Q    ++L +   ++ +       LAD+CG++L V LPK + VR   W    LS EQ
Sbjct:  551 PIALVQIAYGNSVYLMRI---HSFASNNLPENLIKILTDTKIAKIGKNVSGDLTRFRYFGLQQCPGQLELGTFCKDKDLIERRNTSLADICGFVLKVQLPKANFVRCGNWEAPILSEEQ 666          
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Match: A0A8H7QKA6_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QKA6_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 4.280e-5
Identity = 41/147 (27.89%), Postives = 66/147 (44.90%), Query Frame = 1
Query:   13 IGLDIEWEISAAGAPVN----------PPATIQVAAGKVVVIFHVLHGQRVVPGELPGELVELLEDDKATKKWIGIKGDCTKLANAYGVQAVR-VVDLRSLAVERKVEVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQ 420
            IG D EW      +  +          P A +Q+A    V +F +     + P +LP  LV++L D K  K    I  D  +    +G+Q     ++L +   ++ + +     LAD+CG++L V LPK + +R   W    LS EQ
Sbjct:  317 IGFDCEWAFRVGNSARSRSDQTRLRFVPVALVQIAFRNTVSLFRI---HSLQPEQLPQNLVKVLTDSKIVKIGKNISEDLLRF-RYFGLQIFPGQLELGTFCKDKDL-IERSFSLADVCGFVLKVQLPKKNLIRWGNWEAENLSEEQ 458          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig198.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE6.020e-5870.923'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JCK3_9PHAE4.560e-1333.573'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE4.190e-760.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8H7UST7_9FUNG7.090e-629.413'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A8H7QKA6_9FUNG4.280e-527.893'-5' exonuclease domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig198contigP-littoralis_Contig198:85297..85725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog981085.XP_010111221.1
PFAMsDNA_pol_A_exo1
Model size429
Max annot lvl35493|Streptophyta
KEGG koko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360
Exons1
Evalue9.84e-19
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota,37U7J@33090|Viridiplantae,3GIS0@35493|Streptophyta,4JVWJ@91835|fabids
EC3.1.11.1
DescriptionWerner Syndrome-like
Cds size429
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789947.96685-CDS-P-littoralis_Contig198:85296..857251680789947.96685-CDS-P-littoralis_Contig198:85296..85725Pylaiella littoralis U1_48CDSP-littoralis_Contig198 85297..85725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig198.18.1prot_P-littoralis_Contig198.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig198 85297..85725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig198.18.1

>prot_P-littoralis_Contig198.18.1 ID=prot_P-littoralis_Contig198.18.1|Name=mRNA_P-littoralis_Contig198.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
NNNVIGLDIEWEISAAGAPVNPPATIQVAAGKVVVIFHVLHGQRVVPGEL
PGELVELLEDDKATKKWIGIKGDCTKLANAYGVQAVRVVDLRSLAVERKV
EVGLRQGLADLCGYLLGVSLPKDSSVRISRWNIAELSLEQKM*
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mRNA from alignment at P-littoralis_Contig198:85297..85725+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig198.18.1 ID=mRNA_P-littoralis_Contig198.18.1|Name=mRNA_P-littoralis_Contig198.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig198:85297..85725+ (Pylaiella littoralis U1_48)
AACAACAATGTCATCGGCTTGGACATCGAGTGGGAGATATCCGCAGCCGG CGCACCGGTGAATCCACCCGCCACGATTCAAGTTGCCGCCGGCAAAGTAG TCGTGATATTTCATGTCTTGCATGGTCAGCGCGTGGTGCCGGGCGAATTG CCCGGCGAGTTGGTGGAGTTATTGGAGGATGACAAAGCGACAAAAAAGTG GATCGGGATAAAGGGAGACTGCACAAAGCTCGCGAACGCATACGGTGTGC AAGCTGTTCGGGTTGTGGATCTTCGCTCTCTAGCAGTGGAGCGAAAAGTA GAGGTGGGGCTCAGGCAGGGGCTGGCGGACTTGTGTGGTTATCTTCTAGG GGTGAGCTTGCCCAAGGATTCCTCCGTTCGGATCTCGAGGTGGAACATCG CTGAGTTGTCTCTGGAACAGAAAATGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig198:85297..85725+

>mRNA_P-littoralis_Contig198.18.1 ID=mRNA_P-littoralis_Contig198.18.1|Name=mRNA_P-littoralis_Contig198.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig198:85297..85725+ (Pylaiella littoralis U1_48)
AACAACAATGTCATCGGCTTGGACATCGAGTGGGAGATATCCGCAGCCGG
CGCACCGGTGAATCCACCCGCCACGATTCAAGTTGCCGCCGGCAAAGTAG
TCGTGATATTTCATGTCTTGCATGGTCAGCGCGTGGTGCCGGGCGAATTG
CCCGGCGAGTTGGTGGAGTTATTGGAGGATGACAAAGCGACAAAAAAGTG
GATCGGGATAAAGGGAGACTGCACAAAGCTCGCGAACGCATACGGTGTGC
AAGCTGTTCGGGTTGTGGATCTTCGCTCTCTAGCAGTGGAGCGAAAAGTA
GAGGTGGGGCTCAGGCAGGGGCTGGCGGACTTGTGTGGTTATCTTCTAGG
GGTGAGCTTGCCCAAGGATTCCTCCGTTCGGATCTCGAGGTGGAACATCG
CTGAGTTGTCTCTGGAACAGAAAATGTGA
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