mRNA_P-fluviatile_contig100.934.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig100.934.1
Unique Name	mRNA_P-fluviatile_contig100.934.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

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BLAST of mRNA_P-fluviatile_contig100.934.1 vs. uniprot
Match: A0A6H5KXB0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXB0_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 7.620e-5
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = -2

Query:  261 HAEAVEFCRLHPSSMEGTQDR 323
            HAEAVEFCRLHPSSMEGTQDR
Sbjct:  120 HAEAVEFCRLHPSSMEGTQDR 140

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig100.934.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig100.934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

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POSITION

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Match Name	E-value	Identity	Description
A0A6H5KXB0_9PHAE	7.620e-5	100.00	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig100	contig	P-fluviatile_contig100:19823..20146 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	325
Cds size	324
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815421.1896143-CDS-P-fluviatile_contig100:19822..20146	1622815421.1896143-CDS-P-fluviatile_contig100:19822..20146	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig100 19823..20146 +
1693561797.4283712-CDS-P-fluviatile_contig100:19822..20146	1693561797.4283712-CDS-P-fluviatile_contig100:19822..20146	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig100 19823..20146 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig100.934.1	prot_P-fluviatile_contig100.934.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig100 19823..20146 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig100:19823..20146+
coding sequence from alignment at P-fluviatile_contig100:19823..20146+

protein sequence of mRNA_P-fluviatile_contig100.934.1

>prot_P-fluviatile_contig100.934.1 ID=prot_P-fluviatile_contig100.934.1|Name=mRNA_P-fluviatile_contig100.934.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=108bp
LLNGDQHKRAHTTLKCTRVFSTRARGPQPCGYNPLAFPLRPVSRPVPADM
VLYTSGPSPGLVFPPCCCGLSPDPSQQTWCCIPPDHPRSCVPSMLLGCRR
QNSTASA*

mRNA from alignment at P-fluviatile_contig100:19823..20146+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig100.934.1 ID=mRNA_P-fluviatile_contig100.934.1|Name=mRNA_P-fluviatile_contig100.934.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig100:19823..20146+ (Porterinema fluviatile SAG_2381)
CTCCTTAACGGGGATCAACACAAGAGAGCACACACTACTCTCAAGTGTAC
ACGAGTGTTCTCAACTCGTGCTCGCGGGCCACAACCTTGCGGGTACAACC
CGCTGGCATTCCCGCTCCGGCCTGTCTCCAGACCCGTCCCAGCAGACATG
GTGTTGTATACCTCCGGGCCATCTCCCGGTCTTGTGTTCCCTCCATGCTG
TTGTGGCCTGTCTCCAGACCCGTCCCAGCAGACATGGTGTTGTATACCTC
CGGACCATCCCCGGTCTTGTGTTCCTTCCATGCTGCTGGGGTGCAGGCGG
CAAAATTCCACCGCCTCCGCGTGA

Coding sequence (CDS) from alignment at P-fluviatile_contig100:19823..20146+

>mRNA_P-fluviatile_contig100.934.1 ID=mRNA_P-fluviatile_contig100.934.1|Name=mRNA_P-fluviatile_contig100.934.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=648bp|location=Sequence derived from alignment at P-fluviatile_contig100:19823..20146+ (Porterinema fluviatile SAG_2381)
CTCCTTAACGGGGATCAACACAAGAGAGCACACACTACTCTCAAGTGTAC
ACGAGTGTTCTCAACTCGTGCTCGCGGGCCACAACCTTGCGGGTACAACC
CGCTGGCATTCCCGCTCCGGCCTGTCTCCAGACCCGTCCCAGCAGACATG
GTGTTGTATACCTCCGGGCCATCTCCCGGTCTTGTGTTCCCTCCATGCTG
TTGTGGCCTGTCTCCAGACCCGTCCCAGCAGACATGGTGTTGTATACCTC
CGGACCATCCCCGGTCTTGTGTTCCTTCCATGCTGCTGGGGTGCAGGCGG
CAAAATTCCACCGCCTCCGCGTGACTCCTTAACGGGGATCAACACAAGAG
AGCACACACTACTCTCAAGTGTACACGAGTGTTCTCAACTCGTGCTCGCG
GGCCACAACCTTGCGGGTACAACCCGCTGGCATTCCCGCTCCGGCCTGTC
TCCAGACCCGTCCCAGCAGACATGGTGTTGTATACCTCCGGGCCATCTCC
CGGTCTTGTGTTCCCTCCATGCTGTTGTGGCCTGTCTCCAGACCCGTCCC
AGCAGACATGGTGTTGTATACCTCCGGACCATCCCCGGTCTTGTGTTCCT
TCCATGCTGCTGGGGTGCAGGCGGCAAAATTCCACCGCCTCCGCGTGA