mRNA_P-fluviatile_contig100.934.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig100.934.1
Unique NamemRNA_P-fluviatile_contig100.934.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig100.934.1 vs. uniprot
Match: A0A6H5KXB0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXB0_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 7.620e-5
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = -2 
Query:  261 HAEAVEFCRLHPSSMEGTQDR 323
            HAEAVEFCRLHPSSMEGTQDR
Sbjct:  120 HAEAVEFCRLHPSSMEGTQDR 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig100.934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXB0_9PHAE7.620e-5100.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig100contigP-fluviatile_contig100:19823..20146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size325
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815421.1896143-CDS-P-fluviatile_contig100:19822..201461622815421.1896143-CDS-P-fluviatile_contig100:19822..20146Porterinema fluviatile SAG_2381CDSP-fluviatile_contig100 19823..20146 +
1693561797.4283712-CDS-P-fluviatile_contig100:19822..201461693561797.4283712-CDS-P-fluviatile_contig100:19822..20146Porterinema fluviatile SAG_2381CDSP-fluviatile_contig100 19823..20146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig100.934.1prot_P-fluviatile_contig100.934.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig100 19823..20146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig100.934.1

>prot_P-fluviatile_contig100.934.1 ID=prot_P-fluviatile_contig100.934.1|Name=mRNA_P-fluviatile_contig100.934.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=108bp
LLNGDQHKRAHTTLKCTRVFSTRARGPQPCGYNPLAFPLRPVSRPVPADM
VLYTSGPSPGLVFPPCCCGLSPDPSQQTWCCIPPDHPRSCVPSMLLGCRR
QNSTASA*
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mRNA from alignment at P-fluviatile_contig100:19823..20146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig100.934.1 ID=mRNA_P-fluviatile_contig100.934.1|Name=mRNA_P-fluviatile_contig100.934.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig100:19823..20146+ (Porterinema fluviatile SAG_2381)
CTCCTTAACGGGGATCAACACAAGAGAGCACACACTACTCTCAAGTGTAC
ACGAGTGTTCTCAACTCGTGCTCGCGGGCCACAACCTTGCGGGTACAACC
CGCTGGCATTCCCGCTCCGGCCTGTCTCCAGACCCGTCCCAGCAGACATG
GTGTTGTATACCTCCGGGCCATCTCCCGGTCTTGTGTTCCCTCCATGCTG
TTGTGGCCTGTCTCCAGACCCGTCCCAGCAGACATGGTGTTGTATACCTC
CGGACCATCCCCGGTCTTGTGTTCCTTCCATGCTGCTGGGGTGCAGGCGG
CAAAATTCCACCGCCTCCGCGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig100:19823..20146+

>mRNA_P-fluviatile_contig100.934.1 ID=mRNA_P-fluviatile_contig100.934.1|Name=mRNA_P-fluviatile_contig100.934.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=648bp|location=Sequence derived from alignment at P-fluviatile_contig100:19823..20146+ (Porterinema fluviatile SAG_2381)
CTCCTTAACGGGGATCAACACAAGAGAGCACACACTACTCTCAAGTGTAC
ACGAGTGTTCTCAACTCGTGCTCGCGGGCCACAACCTTGCGGGTACAACC
CGCTGGCATTCCCGCTCCGGCCTGTCTCCAGACCCGTCCCAGCAGACATG
GTGTTGTATACCTCCGGGCCATCTCCCGGTCTTGTGTTCCCTCCATGCTG
TTGTGGCCTGTCTCCAGACCCGTCCCAGCAGACATGGTGTTGTATACCTC
CGGACCATCCCCGGTCTTGTGTTCCTTCCATGCTGCTGGGGTGCAGGCGG
CAAAATTCCACCGCCTCCGCGTGACTCCTTAACGGGGATCAACACAAGAG
AGCACACACTACTCTCAAGTGTACACGAGTGTTCTCAACTCGTGCTCGCG
GGCCACAACCTTGCGGGTACAACCCGCTGGCATTCCCGCTCCGGCCTGTC
TCCAGACCCGTCCCAGCAGACATGGTGTTGTATACCTCCGGGCCATCTCC
CGGTCTTGTGTTCCCTCCATGCTGTTGTGGCCTGTCTCCAGACCCGTCCC
AGCAGACATGGTGTTGTATACCTCCGGACCATCCCCGGTCTTGTGTTCCT
TCCATGCTGCTGGGGTGCAGGCGGCAAAATTCCACCGCCTCCGCGTGA
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