mRNA_P-wetherbeei_contig85.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A6H5J6X8_9PHAE (NGN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X8_9PHAE) HSP 1 Score: 152 bits (383), Expect = 2.020e-35 Identity = 80/217 (36.87%), Postives = 130/217 (59.91%), Query Frame = 2
Query: 365 GVRCHTDTEFRWYVIQVYTSFERYAANVIENRCVDWGVRDRVDKVVVPVRQVPQTVGRSVRTKDLPMYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRDGEFVVRLYAFGKRMDVSVPFDAVRKLTEEEILAESEAKEAALSGSYASTYANR 1015
GV+ TD EF WY+++ + ++E N +E G+ DRV+++ VP RQVP+ VG+ V K+ P+Y GY+Y KM+ +RD VN++ ++VGFVG +D++ IP+ M +E I A+ E A +I G+GD+VEI++GP+ + G + ++DGE+VV++ FG+ DV + ++ VRKLTE E+ E A+ +Y + R
Sbjct: 188 GVKVPTDEEFHWYLLRCFATYEMRCRNSVEAYLEGAGLGDRVEEIWVPCRQVPKQVGKKVTFKEEPIYQGYIYCKVKMSPEVRDIVNDMDRIVGFVGEARDEDKKLIPERMDPEDIEGIKAS----EKALGANKIPQLLGVGDLVEISEGPFALKKGEVSKIKDGEYVVKVNTFGRNSDVRLDWNGVRKLTELEVETWFEETRRAMDATYMERQSGR 400
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: D7FH57_ECTSI (Putative transcription antitermination protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH57_ECTSI) HSP 1 Score: 152 bits (384), Expect = 4.080e-34 Identity = 81/217 (37.33%), Postives = 130/217 (59.91%), Query Frame = 2
Query: 365 GVRCHTDTEFRWYVIQVYTSFERYAANVIENRCVDWGVRDRVDKVVVPVRQVPQTVGRSVRTKDLPMYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRDGEFVVRLYAFGKRMDVSVPFDAVRKLTEEEILAESEAKEAALSGSYASTYANR 1015
GV+ TD EF WY+++ + ++E N +E+ G+ DRV+++ VP RQVP+ VG V K+ P+Y GY+Y KM+ +RD VN++ ++VGFVG +D++ IP+ M +E I A+ E A +I G+GD+VEI++GP+ + G + ++DGE+VV++ FG+ DV + +D VRKLTE E+ E A+ +Y + R
Sbjct: 211 GVKVPTDEEFHWYLLRCFATYEVRCRNSVESYLEGAGLGDRVEEIWVPCRQVPKQVGTKVTFKEEPIYQGYIYCKVKMSLEVRDIVNDMDRIVGFVGEARDEDKKLIPERMEPEDIEGIKAS----EKALGANKIPQLLGVGDLVEISEGPFALKKGEVSKIKDGEYVVKVNTFGRNSDVRLDWDGVRKLTELEVETWFEETRRAMDATYMERQSGR 423
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A7S2WSQ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSQ2_9STRA) HSP 1 Score: 109 bits (273), Expect = 3.260e-21 Identity = 65/191 (34.03%), Postives = 99/191 (51.83%), Query Frame = 2
Query: 389 EFRWYVIQVYTSFERYAANVIENRCVDWGVRDRVDKVVVPVRQVPQTVGRSVRTKDLPMYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGAR-------IPDPMPRRQVERIFANIAEAES--EPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRDGEFVVRLYAFGKRMDVSVPFDAVRKL 934
E +WY+I T FE +++ + G+R V ++ VP + + T G+ V TK +YP YV+ M++ + D + V+ FVG+R +G IP P+ ++++ N E +P G F IGD VEI GP + E G LR+VRDG+ VVRL A+G+RMD+ VR+L
Sbjct: 51 ESKWYIINCVTGFELVVERLLQVMVDNVGIRSEVLEIKVPTQTLSMTRGKRVSTKQRTLYPSYVFAHLYMSQEVYDAIMATDHVMSFVGVRSATSGRGRKAAKRVIPQPLSAGEIKQFRLNEEEGAKLEDPTFG-----FSIGDFVEILTGPTKGERGYLRLVRDGQVVVRLMAYGRRMDLDFDPVDVRRL 236
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: UPI001A95C378 (transcription termination/antitermination protein NusG n=1 Tax=Sabulicella rubraurantiaca TaxID=2811429 RepID=UPI001A95C378) HSP 1 Score: 94.7 bits (234), Expect = 1.400e-18 Identity = 54/182 (29.67%), Postives = 89/182 (48.90%), Query Frame = 2
Query: 395 RWYVIQVYTSFERYAANVIENRCVDWGVRDRVDKVVVPVRQVPQTVGRSVRTKDLPMYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRD--GEFVVRLYAFGKRMDVSVPFDAVRKL 934
RWYV+ VY+ FE+ A I ++ G+ DR++ ++VP QV + R + +PGYV V +M++ V + PKV GF+G R P P+P + R+ + E+ +P I F +G+ V ++ GP+ G + V + G V + FG+ V + + V KL
Sbjct: 5 RWYVVHVYSGFEKKIAEQIRHQAEKIGLADRIEDILVPTEQVTEVRRGQKREAERKFFPGYVLVKMEMDDETWHLVRDTPKVTGFLGARNK------PQPIPESEAMRMVQQLTESAEKPKRPAIT--FEVGEQVRVSDGPFTSFNGTVEEVDEEKGRVKVSVSIFGRSTPVELEYGQVEKL 178
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A840XXB8_9PROT (Transcription termination/antitermination protein NusG n=13 Tax=Roseomonas TaxID=125216 RepID=A0A840XXB8_9PROT) HSP 1 Score: 94.4 bits (233), Expect = 1.900e-18 Identity = 58/185 (31.35%), Postives = 91/185 (49.19%), Query Frame = 2
Query: 389 EFRWYVIQVYTSFERYAANVIENRCVDWGVRDRVDKVVVPVRQVPQTV-GRSVRTKDLPMYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRD--GEFVVRLYAFGKRMDVSVPFDAVRKL 934
E +WYV+ VY+ FE+ A I+ + G+ D+ D+V+VP QV + G+ V T D +PGYV V +M + V + PKV GF+G R P P+P + ER+ + E +P + F +G+ V + GP+ G + V + G V + FG+ V + + V KL
Sbjct: 3 EKKWYVVHVYSGFEKKIAEQIKQQAAQKGLADKFDEVLVPTEQVTEVRRGQKVDT-DRKFFPGYVLVKMEMTDEAWHLVKDTPKVTGFLGSRNK------PQPVPASEAERLLKQVQEGVEKPRKPAV--VFEVGEQVRVADGPFTSFNGVVEEVDEEKGRVKVSVSIFGRSTPVDLEYGQVEKL 178
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: K2DX93_9BACT (Transcription termination/antitermination protein NusG n=3 Tax=Bacteria TaxID=2 RepID=K2DX93_9BACT) HSP 1 Score: 94.0 bits (232), Expect = 2.590e-18 Identity = 52/183 (28.42%), Postives = 95/183 (51.91%), Query Frame = 2
Query: 392 FRWYVIQVYTSFERYAANVIENRCVDWGVRDRVDKVVVPVRQVPQTVGRSVRTKDLPMYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRDGEFVVRLYA--FGKRMDVSVPFDAVRKL 934
FRWYV+ VY+ FE+ A I+ + G+ +++D V+VP +V + + T + +PGY+ V K+++ + + + PKV GF+G R P P+ + +V+R+ A + E +P + F IG+ V + +GP+ G + V D + V++ FG+ + + F V K+
Sbjct: 5 FRWYVVNVYSGFEKKVAEHIQEQAAKKGLAEQIDSVLVPTEEVVEIKKGAKVTSERQFFPGYILVKMKLSDEIWHLIRHTPKVSGFLGARGK------PVPVSQTEVDRVLAQVQEGIEKPKSSIT---FEIGEQVRVCEGPFSSFNGVVEEVDDEKQRVKVAVSIFGRSTPIDLDFIQVEKM 178
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A7H1MZF1_9PROT (Transcription termination/antitermination protein NusG n=1 Tax=Defluviicoccus vanus TaxID=111831 RepID=A0A7H1MZF1_9PROT) HSP 1 Score: 92.8 bits (229), Expect = 6.200e-18 Identity = 59/184 (32.07%), Postives = 89/184 (48.37%), Query Frame = 2
Query: 389 EFRWYVIQVYTSFERYAANVIENRCVDWGVRDRVDKVVVPVRQVPQTVGRSVRTKDLPMYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRDGE--FVVRLYAFGKRMDVSVPFDAVRKL 934
E RWYVI VY+ FER A IE + G++DR+ +V+VP+ QV + D +PGYV V +M + V N PKV GF+G N R P P+ + +RI + E P + F +G+ V ++ GP+ +G + V + V + FG+ V + + V KL
Sbjct: 2 EPRWYVIHVYSGFERKVAQSIEEQARQAGMQDRISQVMVPMEQVVEVRRGKAVNADRKFFPGYVLVKMEMTDDTWHLVKNTPKVTGFLG-----NRGR-PTPIGEDEAKRILYQVQEGIERPKPAIV---FEVGEQVRVSDGPFTSFSGLVEEVDEARSRLKVAVSIFGRSTPVELEYAQVEKL 176
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A1W1CD60_9ZZZZ (Transcription antitermination protein NusG n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A1W1CD60_9ZZZZ) HSP 1 Score: 90.1 bits (222), Expect = 5.370e-17 Identity = 50/184 (27.17%), Postives = 93/184 (50.54%), Query Frame = 2
Query: 389 EFRWYVIQVYTSFERYAANVIENRCVDWGVRDRVDKVVVPVRQVPQTVGRSVRTKDLPMYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRI--VRDGEFVVRLYAFGKRMDVSVPFDAVRKL 934
+F+WY IQ Y E+ IE VD+G+ +++D++VVP +V + + + +YPGY + S ++ L ++ ++P+V F+G +K P P+ + V+ I + E +S P R + +F +MV I GP+ TG + + G+ + + FG+ V + + V K+
Sbjct: 2 DFQWYAIQTYAGSEQSVKKAIEQLAVDFGIEEKIDRIVVPTEEVIEVKNGEKKISERSLYPGYAFASIALDTDLWHKIQSLPRVSRFIGEQKT------PTPLNQSDVKVILEKL-EHKSAP---RPKVDFETNEMVRIVDGPFANFTGMVEEYDLDHGKLKLNVSIFGRNTPVEIDYTQVEKI 175
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A7V2WXR7_9PROT (Transcription termination/antitermination protein NusG n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A7V2WXR7_9PROT) HSP 1 Score: 90.1 bits (222), Expect = 5.510e-17 Identity = 56/182 (30.77%), Postives = 85/182 (46.70%), Query Frame = 2
Query: 395 RWYVIQVYTSFERYAANVIENRCVDWGVRDRVDKVVVPVRQVPQTVGRSVRTKDLPMYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRD--GEFVVRLYAFGKRMDVSVPFDAVRKL 934
RWY+I VY+ FE+ A I + G+ ++V+VP +V + + + +PGYV + +N+ V NIPKV GF+G G R P P+P + ERI + E P R F +GD V + GP+ G + V + G V + FG+ V + + V KL
Sbjct: 5 RWYIIHVYSGFEKKVAEAIREQAAQKGLEGCFEEVLVPTEEVVEIRRGKKVSAERKFFPGYVLIKMVLNDDTWSLVRNIPKVTGFLG-----PGGR-PAPIPEEEAERIRRQVQEGVEHP---RPLVSFMVGDRVRVVDGPFNTFEGVVEEVDEARGRVKVAVSIFGRATPVELEYSQVEKL 177
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A7C7MEH6_9GAMM (Transcription termination/antitermination protein NusG n=6 Tax=root TaxID=1 RepID=A0A7C7MEH6_9GAMM) HSP 1 Score: 89.0 bits (219), Expect = 1.390e-16 Identity = 51/183 (27.87%), Postives = 94/183 (51.37%), Query Frame = 2
Query: 389 EFRWYVIQVYTSFERYAANVIENRCVDWGVRDRVDKVVVPVRQVPQTVGRSVRTKDLPMYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVR--DGEFVVRLYAFGKRMDVSVPFDAVRK 931
E++WYV+QVY+++E+ ++E+R G+ ++ +VVP ++ + G +T + +PGYV V+ +N+ VN+IP V+GFVG + P P+ R+V I +A + P R + + G++V + +GP+ G + V + V + G+ V + F+ V K
Sbjct: 2 EYQWYVLQVYSNYEKKVLTMLEDRSKVLGLSEQFADIVVPTEEIVEMKGGQKKTTERKFFPGYVLVNMNLNDETWHFVNSIPNVMGFVG-----GSSEKPAPISDREVMIILNKAEDAANAP---RPKTTYQPGEVVRVIEGPFNDFNGVVEKVNYEKNKLFVAVQILGRATPVELNFNQVEK 176 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig85.5.1 >prot_P-wetherbeei_contig85.5.1 ID=prot_P-wetherbeei_contig85.5.1|Name=mRNA_P-wetherbeei_contig85.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=745bp MYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVback to top mRNA from alignment at P-wetherbeei_contig85:4619..8428+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig85.5.1 ID=mRNA_P-wetherbeei_contig85.5.1|Name=mRNA_P-wetherbeei_contig85.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3810bp|location=Sequence derived from alignment at P-wetherbeei_contig85:4619..8428+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig85:4619..8428+ >mRNA_P-wetherbeei_contig85.5.1 ID=mRNA_P-wetherbeei_contig85.5.1|Name=mRNA_P-wetherbeei_contig85.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2235bp|location=Sequence derived from alignment at P-wetherbeei_contig85:4619..8428+ (Phaeothamnion wetherbeei SAG_119_79)back to top |