prot_P-wetherbeei_contig85.5.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig85.5.1
Unique Nameprot_P-wetherbeei_contig85.5.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length745
Homology
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A6H5J6X8_9PHAE (NGN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X8_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.490e-18
Identity = 54/151 (35.76%), Postives = 89/151 (58.94%), Query Frame = 0
Query:    1 MYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRDGEFVVRLYAFGKRMDVSVPFDAVRKLTEEEILAESEAKEAALSGSYASTYANR 151
            +Y GY+Y   KM+  +RD VN++ ++VGFVG  +D++   IP+ M    +E I A+    E    A +I    G+GD+VEI++GP+  + G +  ++DGE+VV++  FG+  DV + ++ VRKLTE E+    E    A+  +Y    + R
Sbjct:  254 IYQGYIYCKVKMSPEVRDIVNDMDRIVGFVGEARDEDKKLIPERMDPEDIEGIKAS----EKALGANKIPQLLGVGDLVEISEGPFALKKGEVSKIKDGEYVVKVNTFGRNSDVRLDWNGVRKLTELEVETWFEETRRAMDATYMERQSGR 400          
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: D7FH57_ECTSI (Putative transcription antitermination protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH57_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 3.170e-18
Identity = 55/151 (36.42%), Postives = 89/151 (58.94%), Query Frame = 0
Query:    1 MYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRDGEFVVRLYAFGKRMDVSVPFDAVRKLTEEEILAESEAKEAALSGSYASTYANR 151
            +Y GY+Y   KM+  +RD VN++ ++VGFVG  +D++   IP+ M    +E I A+    E    A +I    G+GD+VEI++GP+  + G +  ++DGE+VV++  FG+  DV + +D VRKLTE E+    E    A+  +Y    + R
Sbjct:  277 IYQGYIYCKVKMSLEVRDIVNDMDRIVGFVGEARDEDKKLIPERMEPEDIEGIKAS----EKALGANKIPQLLGVGDLVEISEGPFALKKGEVSKIKDGEYVVKVNTFGRNSDVRLDWDGVRKLTELEVETWFEETRRAMDATYMERQSGR 423          
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A7S2WSQ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSQ2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.030e-11
Identity = 48/133 (36.09%), Postives = 70/133 (52.63%), Query Frame = 0
Query:    1 MYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGAR-------IPDPMPRRQVERIFANIAEAES--EPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRDGEFVVRLYAFGKRMDVSVPFDAVRKL 124
            +YP YV+    M++ + D +     V+ FVG+R   +G         IP P+   ++++   N  E     +P  G     F IGD VEI  GP + E G LR+VRDG+ VVRL A+G+RMD+      VR+L
Sbjct:  109 LYPSYVFAHLYMSQEVYDAIMATDHVMSFVGVRSATSGRGRKAAKRVIPQPLSAGEIKQFRLNEEEGAKLEDPTFG-----FSIGDFVEILTGPTKGERGYLRLVRDGQVVVRLMAYGRRMDLDFDPVDVRRL 236          
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A6N8VKM0_9GAMM (Transcription termination/antitermination protein NusG n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N8VKM0_9GAMM)

HSP 1 Score: 62.0 bits (149), Expect = 2.030e-7
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 0
Query:    2 YPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIV--RDGEFVVRLYAFGKRMDVSVPFDAVRK 123
            +PGYV V   M+E     VNNIPKVVGF+G          P P+  ++V  I   + E  S+P   R +  + +G+++ +T GP+    G +  V     +  V +  FG+   V + F+ V K
Sbjct:   59 FPGYVLVEMVMDENTWHLVNNIPKVVGFIGSTPSN-----PTPVSAKEVGNIVNRMQEDASKP---RPKILYEVGEVIRVTGGPFNDFNGVVEEVDYEKSKLQVSVQIFGRSTPVEITFNQVEK 174          
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: UPI001AF6C0C3 (Transcription termination/antitermination protein NusG n=1 Tax=Neisseriaceae bacterium TaxID=2014784 RepID=UPI001AF6C0C3)

HSP 1 Score: 61.2 bits (147), Expect = 3.890e-7
Identity = 35/125 (28.00%), Postives = 63/125 (50.40%), Query Frame = 0
Query:    2 YPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVR--DGEFVVRLYAFGKRMDVSVPFDAVRKL 124
            +PGY+ V  +M++     V + PK+ GF+G       +  P P+ +R+V+RI   +     +P   + + EFG+G+ V +T+GP+    G +  V     +  V +  FG+   V + F  V K+
Sbjct:   61 FPGYILVEMEMSDETWHLVKSTPKITGFIG-----GTSHKPLPITKREVDRILNQVQSGVEKP---KPKVEFGVGEHVRVTEGPFADFNGIVEEVNYERNKLKVSVQIFGRETPVELDFIQVEKV 177          
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A2E8N8V3_9ACTN (Transcription termination/antitermination protein NusG n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8N8V3_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 6.040e-7
Identity = 33/128 (25.78%), Postives = 68/128 (53.12%), Query Frame = 0
Query:    1 MYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFG--IGDMVEITKGPYRRETGALRIVRDGEFVVRLYA--FGKRMDVSVPFDAVRKL 124
            M+PGY+ V C+++++    + + P +V FVG     +G + P P+ RR++E  F  + + ++     R R  FG  +G+ + + +GP+   +G +  + + +  V++    FG+   V + F  V +L
Sbjct:  144 MFPGYLLVRCRLDDISWTAIRDTPGIVNFVG-----SGGK-PSPLSRREIE-TFLQVPDEDAPEAPRRSRARFGYEVGETIRVKEGPFADFSGEIIEINEDQLKVKVLVNIFGRETPVELEFSQVAQL 264          
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A3D4G1J1_9BACT (Transcription termination/antitermination protein NusG n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A3D4G1J1_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 1.480e-6
Identity = 40/124 (32.26%), Postives = 61/124 (49.19%), Query Frame = 0
Query:    1 MYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRD--GEFVVRLYAFGKRMDVSVPFDAVR 122
            MYPGYV V   +NE     VNNI  V+ FVG  +D      P P+   ++ +I       E E     I   F +G +VEIT+GP+   +G ++ V D  G+  V +  FG+   V + +  ++
Sbjct:   66 MYPGYVLVEMILNERTVHVVNNIQGVIKFVGTGRD------PKPLRDEEINKILGVTTGEEEEDAREEI--PFHMGQVVEITQGPFSDFSGTVQEVFDDKGKVKVEVSLFGRPTTVELDYTQLK 181          
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: UPI000B012596 (Transcription termination/antitermination protein NusG n=2 Tax=Ectothiorhodospiraceae TaxID=72276 RepID=UPI000B012596)

HSP 1 Score: 58.9 bits (141), Expect = 3.130e-6
Identity = 39/127 (30.71%), Postives = 63/127 (49.61%), Query Frame = 0
Query:    1 MYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQ--NGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIV--RDGEFVVRLYAFGKRMDVSVPFDAVRK 123
            +YPGYV V  + ++     V ++PKV+ FVG RKD   +G  +P P+   ++ RI     E + +P   R +  F  G+ V + +GP++   G +  V        V ++ FG+   V V F  V K
Sbjct:   67 IYPGYVLVEMEADQETCRLVKDVPKVIEFVGRRKDGKLDGDDLPPPISDDEINRIRLRQQEGDDKP---RPKVLFEPGETVRVIEGPFKEFNGVVEEVSYEKSRLRVTVHIFGRPTPVDVDFGDVVK 190          
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A661CYC5_9GAMM (Transcription termination/antitermination protein NusG n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A661CYC5_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 6.060e-6
Identity = 37/124 (29.84%), Postives = 62/124 (50.00%), Query Frame = 0
Query:    2 YPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRDGEFVVRLYA--FGKRMDVSVPFDAVRK 123
            +PGYV V+ +M++     VN+IP+V+ F+G   D+     P P+   +   I   + E+E  P   R +  F  G++V +T GP+   TG +  V   +  +R+    FG+   V + F  V K
Sbjct:   61 FPGYVLVNMEMDDETWHVVNDIPRVLRFIGGTGDR-----PTPISEAEANNILQRVHESEESP---RPKVLFEPGEVVRVTDGPFNDFTGVVEEVNYEKSTMRVEVVIFGRSTPVELQFSQVAK 176          
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Match: A0A3M2BE45_9BACT (Transcription termination/antitermination protein NusG n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A3M2BE45_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 6.410e-6
Identity = 35/124 (28.23%), Postives = 62/124 (50.00%), Query Frame = 0
Query:    1 MYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQVERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRD--GEFVVRLYAFGKRMDVSVPFDAVR 122
            +YPGYV V+  +N+     +NNI  V+ FVG  ++      P P+   ++ +I     E E +     I   F IG +VE+T+GP+   +G ++ V    G+  V +  FG+   V + +  ++
Sbjct:   63 LYPGYVLVNMDLNDRTLHAINNIQGVIKFVGAGQE------PQPLREEEINKILGIETEVEGDESHEEI--PFHIGQVVEVTRGPFSDFSGTVQEVYPDKGKVKVEVSLFGRPTSVELDYTQLK 178          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig85.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5J6X8_9PHAE2.490e-1835.76NGN domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FH57_ECTSI3.170e-1836.42Putative transcription antitermination protein n=1... [more]
A0A7S2WSQ2_9STRA1.030e-1136.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6N8VKM0_9GAMM2.030e-731.45Transcription termination/antitermination protein ... [more]
UPI001AF6C0C33.890e-728.00Transcription termination/antitermination protein ... [more]
A0A2E8N8V3_9ACTN6.040e-725.78Transcription termination/antitermination protein ... [more]
A0A3D4G1J1_9BACT1.480e-632.26Transcription termination/antitermination protein ... [more]
UPI000B0125963.130e-630.71Transcription termination/antitermination protein ... [more]
A0A661CYC5_9GAMM6.060e-629.84Transcription termination/antitermination protein ... [more]
A0A3M2BE45_9BACT6.410e-628.23Transcription termination/antitermination protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003034SAP domainSMARTSM00513sap_9coord: 708..742
e-value: 1.7E-11
score: 54.2
IPR003034SAP domainPFAMPF02037SAPcoord: 708..741
e-value: 2.2E-13
score: 49.6
IPR003034SAP domainPROSITEPS50800SAPcoord: 708..742
score: 12.02362
IPR036735NusG, N-terminal domain superfamilyGENE3D3.30.70.940coord: 1..58
e-value: 3.0E-8
score: 35.6
IPR036735NusG, N-terminal domain superfamilySUPERFAMILY82679N-utilization substance G protein NusG, N-terminal domaincoord: 1..57
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 72..128
e-value: 3.4E-5
score: 25.5
IPR036361SAP domain superfamilyGENE3D1.10.720.30SAP domaincoord: 707..743
e-value: 3.3E-13
score: 51.0
IPR036361SAP domain superfamilySUPERFAMILY68906SAP domaincoord: 707..742
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 686..709
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 606..665
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 281..417
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..265
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 380..394
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 533..574
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 631..647
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 445..511
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..209
IPR043425NusG-likePANTHERPTHR30265RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSGcoord: 1..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig85contigP-wetherbeei_contig85:5181..8183 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig85.5.1mRNA_P-wetherbeei_contig85.5.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig85 4619..8428 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig85.5.1 ID=prot_P-wetherbeei_contig85.5.1|Name=mRNA_P-wetherbeei_contig85.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=745bp
MYPGYVYVSCKMNEVLRDRVNNIPKVVGFVGIRKDQNGARIPDPMPRRQV
ERIFANIAEAESEPVAGRIRGEFGIGDMVEITKGPYRRETGALRIVRDGE
FVVRLYAFGKRMDVSVPFDAVRKLTEEEILAESEAKEAALSGSYASTYAN
RDRNGPLGAAGGGPGGSNGPVGAASAGYVGTARYERDIQKREQGPWSGAE
RRVRREQGGGGRDGAYNARGGTSPAFGGESGSGGGRGYDDAPRPGIGRMG
RPLVKPGGSRAAAANAGGTIGNDFFDSLNDLLDDPNDGGDDAAGSGPADA
RRGRADVGAGGFIEDGVGGSGDGGGGGMPLAASAFSGLDLEAEGGGEGED
DGFFEALMRELKAPAAGDDGAVGDPVPSPQSRGAQRSQRAGGASVTAVSG
GAAGRRRGGDNDDADFGISVAEPHVFDLDLDMDLDFEKELSAFLDSSGSP
NPAVGAVAAAGGDANENDRGQPLSKMGGAAAAGASSARLGNAGGGAPEAA
AAAGSAANGLSGFDGDAELESLLAELERGDLGDVPLMPLPPPSPFSAGRG
GAPARRREGSVDREVGSPPVRPAAGAAAPAAAGIFTGMGADATTAASEGQ
WPLISDFDLLPPAAERTQQPRQSPVVGRGPGAAEPRPPLPPPPAAAAVAA
AAPEEAATTVADEPRTAAPPAAAAIAAAAAAEPKAAAGGAAAAAATETPA
GGRGGDPYKALKVAELKEACRSRGLPVGGKKQDLLERLAAADGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
IPR036735NGN_dom_sf
IPR014722Rib_L2_dom2
IPR036361SAP_dom_sf
IPR043425NusG-like