mRNA_P-wetherbeei_contig6347.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6347.2.1
Unique NamemRNA_P-wetherbeei_contig6347.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 6.320e-91
Identity = 133/206 (64.56%), Postives = 169/206 (82.04%), Query Frame = 1
Query:   10 LPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLCI 627
            L ++  K++RIR+TC+KML++RGY V +  ++  +E F ++YG  P R ++T+LVE+ +D  D++FVFFP++EKVGVKPIR+Y+E+M EE V  AIIV+KGGITPFAR+AI ELCAQR V +EDFKDAELM+DITEH LVPEH+  L  + K ELLKRYKLKD QLPRI  TDPVAR++G++KGQV KI RPSETAGRYVTYRLCI
Sbjct:    8 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQV-LSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 212          
BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA)

HSP 1 Score: 270 bits (689), Expect = 4.370e-89
Identity = 136/207 (65.70%), Postives = 166/207 (80.19%), Query Frame = 1
Query:   19 DAIKLFRIRKTCLKMLKRRGYLVPEHELTWN----TEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLCI 627
            +  KLFRIRKTCLKML +RGY V +  ++ +    T++F E++G NP R ++TILVE+ +D  DR+FVFFP+EEKVGVK IR Y +RM +ENV  +IIVV+GG+TP +R A  +LC QR V IEDFKDAELMVDIT+HVLVPEH+  L+ + K ELLKRYKL D QLPRI  TDPVARYYGL++GQVVKIIRPSETAGRYVTYRLC+
Sbjct:    8 EGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQV-LNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGLQRGQVVKIIRPSETAGRYVTYRLCM 213          
BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH)

HSP 1 Score: 248 bits (633), Expect = 1.330e-80
Identity = 125/209 (59.81%), Postives = 161/209 (77.03%), Query Frame = 1
Query:    1 MGDLPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLCI 627
            +G L  +A K+FR+RKTCLKML +RGY+V E+ L  +T+QF +K+G  P R  +TIL E+ +D  D++FVFFPE+EKVGV PI+ Y +RM   NV  AIIVVK  +TPFARTA+ E+ + R   +E F+DAEL+VDITEH LVPEH   L  Q K ELL+RY+LK +QLPRI + DP+ARY GL++GQVVKI+RPSETAGRYVTYR+C+
Sbjct:    5 VGGLNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEH-IVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQGQVVKIVRPSETAGRYVTYRICV 211          
BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD)

HSP 1 Score: 242 bits (618), Expect = 2.150e-78
Identity = 123/206 (59.71%), Postives = 156/206 (75.73%), Query Frame = 1
Query:    1 MGDLPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYR 618
            M  L  +A +L+R+RKT +KML  RGY+V E+EL    E F  ++G NP R  +TILVE+ +D  D LFVFFPE+ KVGVKPIR +  RM +ENV+ AI+VV+ GITPFAR A+ E+ A R+  IE FK+ EL+VDITEH LVP H+  L+   K  LLKRY++KD+QLPR+ +TDP+ARYYG+ +GQVVKIIRPSETAGRYVTYR
Sbjct:    1 MSGLTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEM-APRY-KIEHFKETELLVDITEHTLVPVHRV-LNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYR 203          
BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A5D6XUM4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUM4_9STRA)

HSP 1 Score: 244 bits (624), Expect = 1.120e-76
Identity = 126/209 (60.29%), Postives = 156/209 (74.64%), Query Frame = 1
Query:    1 MGDLPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLCI 627
            M  L  +A +LFR+RKT +KML  RGY+V E+EL    E F +++G NP R  +TILVE+ +D  D LFVFFPE+ KVGVKPIR Y  RM +ENV  AI+VV+ GITPFAR A+ E+ A R+  IE FK+ EL+VDITEH LVP H+  L    K  LLKRY++KD+QLPR+ +TDP+ARYYG+ +GQVVKIIRPSETAGRYVTYR  I
Sbjct:    1 MSGLTPEASRLFRVRKTTVKMLHNRGYIVSENELVMTPESFQQQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEM-APRY-KIEHFKETELLVDITEHTLVPVHRV-LSRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYRAVI 206          
BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A2P4Y6Z7_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6Z7_9STRA)

HSP 1 Score: 239 bits (610), Expect = 3.530e-76
Identity = 123/209 (58.85%), Postives = 155/209 (74.16%), Query Frame = 1
Query:    1 MGDLPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLCI 627
            M +L  +A +L+R+RKT +KML  R Y+V E+EL    E F  ++G NP R  +TILVE+ +D  D LFVFFPE+ KVGVKPIR Y  RM +ENV  AI+VV+ GITPFAR A+ E+ A R+  IE FK+ EL+VDITEH LVP H+  L    K  LLKRY+++D+QLPR+ +TDP+ARYYG+ +GQVVKIIRPSETAGRYVTYR  I
Sbjct:   72 MSELTPEASRLYRVRKTTVKMLHNRDYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKMDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEM-APRY-KIEHFKETELLVDITEHTLVPVHRV-LGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGMTRGQVVKIIRPSETAGRYVTYRAVI 277          
BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC)

HSP 1 Score: 235 bits (599), Expect = 1.770e-75
Identity = 119/203 (58.62%), Postives = 155/203 (76.35%), Query Frame = 1
Query:   10 LPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYR 618
            L  +A +L+R+RKT +KML  RGY+V + EL   T+ F+ ++G NP R  +TILVE+ +D  D LFVF+P++ KVGVKPIR Y  RM +ENV  AI++V+ GITPFA+ A+ E+ A R+  I+ FK+ EL+VDITEH LVP HK  L  + K  LLKRYKLKD+QLPR+ ++DP+ARYYG+ +GQVVKIIRPSETAGRYVTYR
Sbjct:    6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEM-APRY-KIDHFKETELLVDITEHTLVPVHKV-LTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 205          
BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA)

HSP 1 Score: 234 bits (597), Expect = 3.220e-75
Identity = 123/203 (60.59%), Postives = 151/203 (74.38%), Query Frame = 1
Query:   10 LPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYR 618
            L  +A KLFR+RKT +KML  RGY+V E EL    E F  ++G NP R  +TILVE+ +D  D LFVF+PE+ KVGVKPIR Y  RM +ENV  AI++V+ GITPFA+ A+ E+ A R+  I+ FK+ EL+VDITEH LVP HK  L  + K  LLKRYKLKD QLPR+  +DP+ARYYG+ +GQVVKIIRPSETAGRYVTYR
Sbjct:    3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEM-APRY-KIDHFKENELLVDITEHTLVPVHKV-LTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMSRGQVVKIIRPSETAGRYVTYR 202          
BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A7S1SMF5_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SMF5_9CHLO)

HSP 1 Score: 233 bits (593), Expect = 1.180e-74
Identity = 115/203 (56.65%), Postives = 157/203 (77.34%), Query Frame = 1
Query:   16 EDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLC 624
            ++A KLFRIR+TCL+ML+ RGYLV E EL  + E F++K+G  PLR ++TILV + ED  D++FVFFP+E K+GV  I+ Y  RM +E V+ A++V+ G +T FA+T++ ++ ++ H  IE FK+ EL+V+IT+HVLVPEH+  L  + K  LL RYK+ D QLPRI + DPVARYYGL++GQVV+I+RPSETAGRYVTYRLC
Sbjct:    2 DNATKLFRIRRTCLQMLRDRGYLVSEAELNQSKENFTDKFGDEPLRDQLTILVCKQEDPTDQIFVFFPDEVKIGVSTIKTYFNRMKDEAVHRAVMVMPGTLTSFAKTSLQDISSKYH--IEQFKENELLVNITQHVLVPEHRL-LTAEEKRALLNRYKVSDTQLPRIQVADPVARYYGLQRGQVVRIVRPSETAGRYVTYRLC 201          
BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A7R9WH73_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WH73_9STRA)

HSP 1 Score: 233 bits (595), Expect = 8.750e-74
Identity = 119/208 (57.21%), Postives = 153/208 (73.56%), Query Frame = 1
Query:    4 GDLPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLCI 627
            G L  +A +LFR+ KT   ML +RGY+VP          F+EK+G  P R  +TILVE+ +D+ ++LFVFFPE+EKVGVKPI+ Y +RM EE V+ A++V++  ITPFA+ A+ E+       IE FK+AEL+VDIT+H LVPEH+  L    K ELLKRY+LK+ QLPRI   DPVARYYG+K+GQVVKIIRPSETAGRYVTYR+C+
Sbjct:   82 GGLTPEASRLFRVYKTVAAMLTKRGYMVPRDMRDMTPSAFTEKFGEYPARESLTILVEKADDETNQLFVFFPEDEKVGVKPIKIYTDRMKEEAVSNAVLVLRVDITPFAKQAVQEMSDS--FRIEHFKEAELLVDITDHQLVPEHQV-LSQNEKQELLKRYRLKETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYRICM 286          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y9_ECTSI6.320e-9164.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLJ3_9STRA4.370e-8965.70RNA polymerase Rpb5, C-terminal domain-containing ... [more]
A0A482UUV9_9ARCH1.330e-8059.81DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=a... [more]
K3WP89_GLOUD2.150e-7859.71Uncharacterized protein n=27 Tax=Oomycota TaxID=47... [more]
A0A5D6XUM4_9STRA1.120e-7660.29Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2P4Y6Z7_9STRA3.530e-7658.85DNA-directed RNA polymerase I, II, and III subunit... [more]
A0A067CT03_SAPPC1.770e-7558.62Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
W4GMP1_9STRA3.220e-7560.59Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A7S1SMF5_9CHLO1.180e-7456.65Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7R9WH73_9STRA8.750e-7457.21Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6347contigP-wetherbeei_contig6347:1433..2641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1Y9
Preferred nameRPB5
PFAMsRNA_pol_Rpb5_C,RNA_pol_Rpb5_N
Model size630
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03013
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001054,GO:0003674,GO:0003700,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006360,GO:0006366,GO:0006383,GO:0006386,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042221,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Exons3
Evalue1.04e-91
EggNOG OGsCOG2012@1|root,KOG3218@2759|Eukaryota
Ec32 ortholog descriptionRNA polymerase, subunit H/Rpb5 C-terminal
Ec32 orthologEc-07_003640.1
DescriptionDNA-directed 5'-3' RNA polymerase activity
Cds size630
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.504066-CDS-P-wetherbeei_contig6347:1432..16001683186906.504066-CDS-P-wetherbeei_contig6347:1432..1600Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6347 1433..1600 -
1683186906.5156438-CDS-P-wetherbeei_contig6347:1988..22191683186906.5156438-CDS-P-wetherbeei_contig6347:1988..2219Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6347 1989..2219 -
1683186906.5240443-CDS-P-wetherbeei_contig6347:2410..26411683186906.5240443-CDS-P-wetherbeei_contig6347:2410..2641Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6347 2411..2641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6347.2.1prot_P-wetherbeei_contig6347.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6347 1433..2641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6347.2.1

>prot_P-wetherbeei_contig6347.2.1 ID=prot_P-wetherbeei_contig6347.2.1|Name=mRNA_P-wetherbeei_contig6347.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=210bp
MGDLPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPL
RREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAII
VVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASL
HLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAG
RYVTYRLCI*
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mRNA from alignment at P-wetherbeei_contig6347:1433..2641-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6347.2.1 ID=mRNA_P-wetherbeei_contig6347.2.1|Name=mRNA_P-wetherbeei_contig6347.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1209bp|location=Sequence derived from alignment at P-wetherbeei_contig6347:1433..2641- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGACCTGCCGGAAGACGCGATCAAGCTGTTCAGGATACGCAAGAC GTGTCTCAAGATGCTGAAGCGCCGCGGCTATCTCGTGCCCGAGCACGAGC TGACCTGGAACACCGAGCAGTTTTCAGAAAAGTACGGCTCTAATCCTTTG CGGCGGGAGGTGACTATCCTCGTGGAGAGACCAGAGGACGATAAGGATAG GCTCTTCGTCTTCTTCCCGGAGGAGGAGAAGGTAAGAAGCGAAAGCAGAG GAAGGAGCATCGTCTTCGGGCAGAATTTCGTAGACAGAGAGAGCCTGCAC TTGCTTGGCCCCCCAAAATTTTATCTCCTCTTTCTCATTATTCTCGCAAC AACTGCCGTCGCCGTTTTCGGCTCGTCTGCCCGTCCGTATCCGCATCGCG CCGCCCATCGCGAGCGAGTTAGGTGGGCGTGAAGCCGATCCGGGCGTACG CTGAGCGGATGGGGGAGGAGAATGTGAACGCCGCCATCATCGTCGTCAAG GGCGGCATCACACCCTTTGCACGGACCGCCATCGGCGAGCTCTGCGCGCA ACGGCACGTGAGCATCGAGGACTTTAAGGACGCCGAGCTGATGGTCGACA TCACCGAGCACGTCCTCGTGCCGGAGCACAAGGCAAGTCTACATCTTCAG CCTGTCTGTCACTTTGTCAACGTTCTCTCTTTCGTTTCTTTTTGCCGTCC CGTCTTTTGTCGTCCTTTTCTTGCGTCTTCTCGCGAACTGTATGCCTAAA ATTCGCTCCGGCGCGTTTTTGAAATAAAAGATCATGGGGGGAGGGAAAGG CGCCACCAATATTCGCCTAGCAGGTTCGGGCCTTGTCAAGGCCCATTTTT TGGCCAGGCCGATTCTAACTTCGCAGTCAATTTTACGAGCATCGCTCTTT CGCCCGCCTTCTCATGACAGAAAGCGCATCAATTTAAGCAAACCACCGAC CGGCTGAACCCCTCCCTCATTGCGAGGACGATCCGTCGGCTATTGTTACG GTTACCATTTGTGGAAACGCCAGGTGTTGACGCCGCACGAGAAGACGGAG CTGCTGAAGCGCTACAAGCTGAAAGACGCGCAGCTGCCACGGATCCTACT GACGGACCCCGTGGCACGTTACTATGGCCTCAAAAAGGGCCAGGTGGTCA AGATCATCCGGCCATCGGAGACCGCCGGCCGCTACGTCACGTACCGCCTC TGCATATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6347:1433..2641-

>mRNA_P-wetherbeei_contig6347.2.1 ID=mRNA_P-wetherbeei_contig6347.2.1|Name=mRNA_P-wetherbeei_contig6347.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=630bp|location=Sequence derived from alignment at P-wetherbeei_contig6347:1433..2641- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGACCTGCCGGAAGACGCGATCAAGCTGTTCAGGATACGCAAGAC
GTGTCTCAAGATGCTGAAGCGCCGCGGCTATCTCGTGCCCGAGCACGAGC
TGACCTGGAACACCGAGCAGTTTTCAGAAAAGTACGGCTCTAATCCTTTG
CGGCGGGAGGTGACTATCCTCGTGGAGAGACCAGAGGACGATAAGGATAG
GCTCTTCGTCTTCTTCCCGGAGGAGGAGAAGGTGGGCGTGAAGCCGATCC
GGGCGTACGCTGAGCGGATGGGGGAGGAGAATGTGAACGCCGCCATCATC
GTCGTCAAGGGCGGCATCACACCCTTTGCACGGACCGCCATCGGCGAGCT
CTGCGCGCAACGGCACGTGAGCATCGAGGACTTTAAGGACGCCGAGCTGA
TGGTCGACATCACCGAGCACGTCCTCGTGCCGGAGCACAAGGCAAGTCTA
CATCTTCAGCCTAAGACGGAGCTGCTGAAGCGCTACAAGCTGAAAGACGC
GCAGCTGCCACGGATCCTACTGACGGACCCCGTGGCACGTTACTATGGCC
TCAAAAAGGGCCAGGTGGTCAAGATCATCCGGCCATCGGAGACCGCCGGC
CGCTACGTCACGTACCGCCTCTGCATATGA
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