prot_P-wetherbeei_contig6347.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig6347.2.1
Unique Name	prot_P-wetherbeei_contig6347.2.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	210

Homology

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BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 6.320e-91
Identity = 133/206 (64.56%), Postives = 169/206 (82.04%), Query Frame = 0

Query:    4 LPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLCI 209
            L ++  K++RIR+TC+KML++RGY V +  ++  +E F ++YG  P R ++T+LVE+ +D  D++FVFFP++EKVGVKPIR+Y+E+M EE V  AIIV+KGGITPFAR+AI ELCAQR V +EDFKDAELM+DITEH LVPEH+  L  + K ELLKRYKLKD QLPRI  TDPVAR++G++KGQV KI RPSETAGRYVTYRLCI
Sbjct:    8 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQV-LSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 212

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BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA)

HSP 1 Score: 270 bits (689), Expect = 4.370e-89
Identity = 136/207 (65.70%), Postives = 166/207 (80.19%), Query Frame = 0

Query:    7 DAIKLFRIRKTCLKMLKRRGYLVPEHELTWN----TEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLCI 209
            +  KLFRIRKTCLKML +RGY V +  ++ +    T++F E++G NP R ++TILVE+ +D  DR+FVFFP+EEKVGVK IR Y +RM +ENV  +IIVV+GG+TP +R A  +LC QR V IEDFKDAELMVDIT+HVLVPEH+  L+ + K ELLKRYKL D QLPRI  TDPVARYYGL++GQVVKIIRPSETAGRYVTYRLC+
Sbjct:    8 EGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQV-LNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGLQRGQVVKIIRPSETAGRYVTYRLCM 213

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BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH)

HSP 1 Score: 248 bits (633), Expect = 1.330e-80
Identity = 125/209 (59.81%), Postives = 161/209 (77.03%), Query Frame = 0

Query:    1 MGDLPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLCI 209
            +G L  +A K+FR+RKTCLKML +RGY+V E+ L  +T+QF +K+G  P R  +TIL E+ +D  D++FVFFPE+EKVGV PI+ Y +RM   NV  AIIVVK  +TPFARTA+ E+ + R   +E F+DAEL+VDITEH LVPEH   L  Q K ELL+RY+LK +QLPRI + DP+ARY GL++GQVVKI+RPSETAGRYVTYR+C+
Sbjct:    5 VGGLNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEH-IVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQGQVVKIVRPSETAGRYVTYRICV 211

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BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD)

HSP 1 Score: 242 bits (618), Expect = 2.150e-78
Identity = 123/206 (59.71%), Postives = 156/206 (75.73%), Query Frame = 0

Query:    1 MGDLPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYR 206
            M  L  +A +L+R+RKT +KML  RGY+V E+EL    E F  ++G NP R  +TILVE+ +D  D LFVFFPE+ KVGVKPIR +  RM +ENV+ AI+VV+ GITPFAR A+ E+ A R+  IE FK+ EL+VDITEH LVP H+  L+   K  LLKRY++KD+QLPR+ +TDP+ARYYG+ +GQVVKIIRPSETAGRYVTYR
Sbjct:    1 MSGLTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEM-APRY-KIEHFKETELLVDITEHTLVPVHRV-LNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYR 203

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BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A5D6XUM4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUM4_9STRA)

HSP 1 Score: 244 bits (624), Expect = 1.120e-76
Identity = 126/209 (60.29%), Postives = 156/209 (74.64%), Query Frame = 0

Query:    1 MGDLPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLCI 209
            M  L  +A +LFR+RKT +KML  RGY+V E+EL    E F +++G NP R  +TILVE+ +D  D LFVFFPE+ KVGVKPIR Y  RM +ENV  AI+VV+ GITPFAR A+ E+ A R+  IE FK+ EL+VDITEH LVP H+  L    K  LLKRY++KD+QLPR+ +TDP+ARYYG+ +GQVVKIIRPSETAGRYVTYR  I
Sbjct:    1 MSGLTPEASRLFRVRKTTVKMLHNRGYIVSENELVMTPESFQQQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEM-APRY-KIEHFKETELLVDITEHTLVPVHRV-LSRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYRAVI 206

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BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A2P4Y6Z7_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6Z7_9STRA)

HSP 1 Score: 239 bits (610), Expect = 3.530e-76
Identity = 123/209 (58.85%), Postives = 155/209 (74.16%), Query Frame = 0

Query:    1 MGDLPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLCI 209
            M +L  +A +L+R+RKT +KML  R Y+V E+EL    E F  ++G NP R  +TILVE+ +D  D LFVFFPE+ KVGVKPIR Y  RM +ENV  AI+VV+ GITPFAR A+ E+ A R+  IE FK+ EL+VDITEH LVP H+  L    K  LLKRY+++D+QLPR+ +TDP+ARYYG+ +GQVVKIIRPSETAGRYVTYR  I
Sbjct:   72 MSELTPEASRLYRVRKTTVKMLHNRDYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKMDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEM-APRY-KIEHFKETELLVDITEHTLVPVHRV-LGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGMTRGQVVKIIRPSETAGRYVTYRAVI 277

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BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC)

HSP 1 Score: 235 bits (599), Expect = 1.770e-75
Identity = 119/203 (58.62%), Postives = 155/203 (76.35%), Query Frame = 0

Query:    4 LPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYR 206
            L  +A +L+R+RKT +KML  RGY+V + EL   T+ F+ ++G NP R  +TILVE+ +D  D LFVF+P++ KVGVKPIR Y  RM +ENV  AI++V+ GITPFA+ A+ E+ A R+  I+ FK+ EL+VDITEH LVP HK  L  + K  LLKRYKLKD+QLPR+ ++DP+ARYYG+ +GQVVKIIRPSETAGRYVTYR
Sbjct:    6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEM-APRY-KIDHFKETELLVDITEHTLVPVHKV-LTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 205

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BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA)

HSP 1 Score: 234 bits (597), Expect = 3.220e-75
Identity = 123/203 (60.59%), Postives = 151/203 (74.38%), Query Frame = 0

Query:    4 LPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYR 206
            L  +A KLFR+RKT +KML  RGY+V E EL    E F  ++G NP R  +TILVE+ +D  D LFVF+PE+ KVGVKPIR Y  RM +ENV  AI++V+ GITPFA+ A+ E+ A R+  I+ FK+ EL+VDITEH LVP HK  L  + K  LLKRYKLKD QLPR+  +DP+ARYYG+ +GQVVKIIRPSETAGRYVTYR
Sbjct:    3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEM-APRY-KIDHFKENELLVDITEHTLVPVHKV-LTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMSRGQVVKIIRPSETAGRYVTYR 202

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BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A7S1SMF5_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SMF5_9CHLO)

HSP 1 Score: 233 bits (593), Expect = 1.180e-74
Identity = 115/203 (56.65%), Postives = 157/203 (77.34%), Query Frame = 0

Query:    6 EDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLC 208
            ++A KLFRIR+TCL+ML+ RGYLV E EL  + E F++K+G  PLR ++TILV + ED  D++FVFFP+E K+GV  I+ Y  RM +E V+ A++V+ G +T FA+T++ ++ ++ H  IE FK+ EL+V+IT+HVLVPEH+  L  + K  LL RYK+ D QLPRI + DPVARYYGL++GQVV+I+RPSETAGRYVTYRLC
Sbjct:    2 DNATKLFRIRRTCLQMLRDRGYLVSEAELNQSKENFTDKFGDEPLRDQLTILVCKQEDPTDQIFVFFPDEVKIGVSTIKTYFNRMKDEAVHRAVMVMPGTLTSFAKTSLQDISSKYH--IEQFKENELLVNITQHVLVPEHRL-LTAEEKRALLNRYKVSDTQLPRIQVADPVARYYGLQRGQVVRIVRPSETAGRYVTYRLC 201

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BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Match: A0A7R9WH73_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WH73_9STRA)

HSP 1 Score: 233 bits (595), Expect = 8.750e-74
Identity = 119/208 (57.21%), Postives = 153/208 (73.56%), Query Frame = 0

Query:    2 GDLPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPLRREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAIIVVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASLHLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAGRYVTYRLCI 209
            G L  +A +LFR+ KT   ML +RGY+VP          F+EK+G  P R  +TILVE+ +D+ ++LFVFFPE+EKVGVKPI+ Y +RM EE V+ A++V++  ITPFA+ A+ E+       IE FK+AEL+VDIT+H LVPEH+  L    K ELLKRY+LK+ QLPRI   DPVARYYG+K+GQVVKIIRPSETAGRYVTYR+C+
Sbjct:   82 GGLTPEASRLFRVYKTVAAMLTKRGYMVPRDMRDMTPSAFTEKFGEYPARESLTILVEKADDETNQLFVFFPEDEKVGVKPIKIYTDRMKEEAVSNAVLVLRVDITPFAKQAVQEMSDS--FRIEHFKEAELLVDITDHQLVPEHQV-LSQNEKQELLKRYRLKETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYRICM 286

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig6347.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G1Y9_ECTSI	6.320e-91	64.56	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YLJ3_9STRA	4.370e-89	65.70	RNA polymerase Rpb5, C-terminal domain-containing ...	[more]
A0A482UUV9_9ARCH	1.330e-80	59.81	DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=a...	[more]
K3WP89_GLOUD	2.150e-78	59.71	Uncharacterized protein n=27 Tax=Oomycota TaxID=47...	[more]
A0A5D6XUM4_9STRA	1.120e-76	60.29	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A2P4Y6Z7_9STRA	3.530e-76	58.85	DNA-directed RNA polymerase I, II, and III subunit...	[more]
A0A067CT03_SAPPC	1.770e-75	58.62	Uncharacterized protein n=4 Tax=Saprolegniaceae Ta...	[more]
W4GMP1_9STRA	3.220e-75	60.59	Uncharacterized protein n=3 Tax=Aphanomyces TaxID=...	[more]
A0A7S1SMF5_9CHLO	1.180e-74	56.65	Hypothetical protein n=1 Tax=Tetraselmis chuii Tax...	[more]
A0A7R9WH73_9STRA	8.750e-74	57.21	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014381	DNA-directed RNA polymerase subunit Rpo5/Rpb5	PIRSF	PIRSF000747	RPB5	coord: 1..209 e-value: 3.9E-72 score: 240.0
IPR014381	DNA-directed RNA polymerase subunit Rpo5/Rpb5	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 10..208
IPR014381	DNA-directed RNA polymerase subunit Rpo5/Rpb5	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 135..209 score: 20.241215
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 135..208 e-value: 7.4E-29 score: 99.4
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 3..132 e-value: 5.8E-37 score: 128.8
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 7..136
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 8..90 e-value: 6.6E-25 score: 87.6
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 133..209 e-value: 2.9E-30 score: 105.7
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 133..209
None	No IPR available	PANTHER	PTHR10535:SF16	OS01G0805800 PROTEIN	coord: 10..208

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig6347	contig	P-wetherbeei_contig6347:1433..2641 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig6347.2.1	mRNA_P-wetherbeei_contig6347.2.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig6347 1433..2641 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig6347.2.1 ID=prot_P-wetherbeei_contig6347.2.1|Name=mRNA_P-wetherbeei_contig6347.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=210bp
MGDLPEDAIKLFRIRKTCLKMLKRRGYLVPEHELTWNTEQFSEKYGSNPL
RREVTILVERPEDDKDRLFVFFPEEEKVGVKPIRAYAERMGEENVNAAII
VVKGGITPFARTAIGELCAQRHVSIEDFKDAELMVDITEHVLVPEHKASL
HLQPKTELLKRYKLKDAQLPRILLTDPVARYYGLKKGQVVKIIRPSETAG
RYVTYRLCI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014381	Arch_Rpo5/euc_Rpb5
IPR000783	RNA_pol_subH/Rpb5_C
IPR036710	RNA_pol_Rpb5_N_sf
IPR005571	RNA_pol_Rpb5_N
IPR035913	RPB5-like_sf