mRNA_P-wetherbeei_contig6524.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6524.1.1
Unique NamemRNA_P-wetherbeei_contig6524.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 1.740e-63
Identity = 151/240 (62.92%), Postives = 172/240 (71.67%), Query Frame = 1
Query:    1 VENVQ-RRTWDEEEYAKRAKERAERGDDYV--DEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
            V+NV+ RRTWD + Y  +AKER E+GDDY   DE A       R +KEEF+PA  GA GPA S RAYLK R  KVD   KLGKTQVVT+A+  S   G+YCE+CKC LKD++NYLDHINGKKHQR LG+SMRVERSTV+QVK+RL MH+ R E+   GA  KPSA+DE+D RVR AE+  XXXXXXXXXXXXXXXXXXXXXXXX                  DP MAAMMGFGGFGGG K
Sbjct:   10 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPAR----RSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ--------------DPEMAAMMGFGGFGGGSK 231          
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA)

HSP 1 Score: 180 bits (457), Expect = 9.450e-52
Identity = 101/171 (59.06%), Postives = 125/171 (73.10%), Query Frame = 1
Query:    1 VENVQRRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEA-EGGAATKPSAKDEYDARV 510
            V NV RR+WD E Y K+AKER ERGD+  +   A         KEEF+PAP GA+GPA S+RAYLKAR++KVD E +L KTQV+TSA A S+  GY+CEVCKC+LKD++ YLDHINGKKHQRALGFSMRVERS+V  VK +L+  R R E+A +   A + SA  EY+ R+
Sbjct:   15 VSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALN--KEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERL 183          
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA)

HSP 1 Score: 146 bits (369), Expect = 9.160e-39
Identity = 117/237 (49.37%), Postives = 146/237 (61.60%), Query Frame = 1
Query:    1 VENVQRRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
            V   QRRTWD +EY K+A+ER  R +  + E            ++EF  A   A GPA S RA+L  R+  +  E   GKTQ++          G+YC+VC+C+LKD+ NYLDHINGKKHQR LGFSMRVERSTV QV  R  + + R+E+ E   AT+P+A + Y+ R+ AA+E  XXXXXXXXXXXXXXXXXXXXXX                  G+DP + A MGFGGFGGG K
Sbjct:    8 VGGAQRRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVRD--RDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKED-EMSVATRPTAIEAYEQRIAAAQEEEXXXXXXXXXXXXXXXXXXXXXXME----------------GMDPDLMAAMGFGGFGGGAK 225          
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA)

HSP 1 Score: 145 bits (365), Expect = 4.220e-38
Identity = 97/234 (41.45%), Postives = 128/234 (54.70%), Query Frame = 1
Query:    7 NVQRRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRP----RKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGF 696
            NV+RRTWD E + K AKER E+        A+      +P    ++EEF+ A AGA GP  S+RAYLK R   +  E K+GK QVVT ++A     GY+C++C+C+LKD++ YLDHINGKKHQ+ALG+SMRVER  V++VK RLN  + RRE+ +  A  + SA D Y  ++   E                                           GVDP MAA+MGFGGF
Sbjct:   17 NVERRTWDLEHFEKIAKERLEK-------EASGDVEKKKPGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALK-RREDEKKKAGPRESAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEG----------GVDPEMAALMGFGGF 232          
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: W2PLF3_PHYPN (U1-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLF3_PHYPN)

HSP 1 Score: 144 bits (362), Expect = 1.490e-37
Identity = 121/237 (51.05%), Postives = 144/237 (60.76%), Query Frame = 1
Query:    1 VENVQRRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
            V NV R+TWD   Y K A+ RAE G    +E            KEEF+ A  GA GPA S RA+LKAR++K+  E  +G  +VV S     N  GYYCEVC+C LKD++ YLDHINGKKH R LG+SMRVERSTV+QVKNRL     R+ +     A K  A ++Y+ +++AAEE XXXXXXXXXXXXXXXXXXXX                       D  M AMMGFGGFGG KK
Sbjct:   13 VANVTRQTWDRAHYEKLAQLRAE-GKLEKEETKKVIKST----KEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVKSDDVSKNG-GYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKRKWDPL--MAKKLDAMEDYEKKLKAAEEEXXXXXXXXXXXXXXXXXXXXALEQDKSDDADKKPEAADEALDADAEMMAMMGFGGFGGSKK 241          
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: UPI0002658601 (zinc finger matrin-type protein 2 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002658601)

HSP 1 Score: 137 bits (345), Expect = 2.050e-35
Identity = 116/239 (48.54%), Postives = 139/239 (58.16%), Query Frame = 1
Query:   16 RRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARS-----QRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDA--RVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
            RR WD +EY KRAKERAE GD+             R   ++ E     + GP+ S     QR  LK R  KVD + +LGKT V++     S A GYYC VC CV+KD++N+LDHINGKKHQR LG SM+VERS+++QVKNRL M+R + EE           K EY+   R+R  EEXXXXXXXXXXXXXXXXX                         G+DP MAAMMGF GFGG KK
Sbjct:   10 RRKWDRDEYEKRAKERAE-GDN-----------EKRSLSDDDEDGCGPSVGPSSSREKKPQRELLKPRQYKVDLDSRLGKTTVISKTADHSQAGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKVERSSLDQVKNRLEMNRRKVEEK----------KKEYNLSERIREVEEXXXXXXXXXXXXXXXXXRKIDSEDQ-----------------GLDPDMAAMMGFSGFGGSKK 209          
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A0P1ATE8_PLAHL (Zinc finger matrin-type protein 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATE8_PLAHL)

HSP 1 Score: 138 bits (348), Expect = 5.890e-35
Identity = 101/237 (42.62%), Postives = 124/237 (52.32%), Query Frame = 1
Query:    1 VENVQRRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
            V NV R+TWD   Y K A+ RAE G   V++            KEEF+ A   A GPA S RA+LKAR+ K+  E  +G  +VV S   LS  SGYYCEVC+C LKD++ YLDHINGKKH R LG+SMRVERSTV+QVK+RL     R+ +       K  A +EY+ +++AAEE                                            D  M AMMGFGGFGG KK
Sbjct:   66 VSNVVRQTWDRAHYEKLAQLRAEGG---VEKETTKKVIHSS--KEEFQTADESAAGPAGSARAFLKARTAKMSLETSVGTVKVVKS-DELSKNSGYYCEVCECSLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKDRLQSAAKRKWDPL--MTKKLDAMEEYEKKLKAAEEAEICLKRQKKEQRKAKKCESEDLSQDRVTAEETVDVVSES----DAEMMAMMGFGGFGGSKK 290          
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A8J5JCN4_9STRA (zf-C2H2_jaz domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCN4_9STRA)

HSP 1 Score: 136 bits (343), Expect = 5.920e-35
Identity = 111/237 (46.84%), Postives = 130/237 (54.85%), Query Frame = 1
Query:    1 VENVQRRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
            V NV R+TWD   Y K A+ RAE   +  +   A         KEEF+ A  GA GPA S RA+LKAR+ K+  E  +G  +VV S   LS   GYYCEVC+C LKD++ YLDHINGKKH R LG+SMRVERSTV+QVKNRL                       Y+ +++AAEE      XXXXXXXXXXXXXX                        D  M AMMGFGGFGG KK
Sbjct:   16 VANVARQTWDRAHYEKLAQLRAEGQLEKEETKKAIKSS-----KEEFQSANEGAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSED-LSKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQ---------------------NYEKKLKAAEEEEARVKXXXXXXXXXXXXXXDTLDQDKNDDADKKPEAADEVPDADAEMMAMMGFGGFGGSKK 225          
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO)

HSP 1 Score: 135 bits (339), Expect = 7.140e-34
Identity = 120/250 (48.00%), Postives = 156/250 (62.40%), Query Frame = 1
Query:    1 VENVQRRTWDEEEYAKRAKERAERGDD--YVDE--------AAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNAS-GYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRL-NMHRTRREEAEGGAATKPSAKDEYDARVRAAE-EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
            V NV RR WD E Y +RAKER  R ++  Y++E        + A         KEEF+ AP  A GP  S+RA+L+AR   +D E K+G +++V++  A+  +  G++C+VC C LKD+L YLDHINGKKHQR LGF+MRVERST +QV +RL ++ +T + + E          +   ++  A + E    XXXXXXXX      XXXXXXXXXXXXXXXXXX      G+DP MAAMMGF GFGGG K
Sbjct:   18 VANVSRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDDSNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSISQTSKSQKETSLDDIVDLNELVQSKDEALQREREEKXXXXXXXXAMENMRXXXXXXXXXXXXXXXXXXEEVDFEGIDPEMAAMMGFSGFGGGNK 267          
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A7M7M6E7_VARDE (U1-type domain-containing protein n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7M6E7_VARDE)

HSP 1 Score: 133 bits (335), Expect = 8.410e-34
Identity = 110/241 (45.64%), Postives = 135/241 (56.02%), Query Frame = 1
Query:   16 RRTWDEEEYAKRAKERA-------ERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDA--RVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
            RR WD EEY +RAK+RA          DD  +++        RP         +G+    + QR  LK R  KVD + KLGKT V++     S A GYYC VC CV+KD++N+LDHINGKKHQR LG SM+VERS+++QVKNRL M R + +E           K EY+   RVR  EE        XXXXXXXXXXXXXXXX                  G+DP ++AMMGF GFGG KK
Sbjct:   11 RRKWDREEYEQRAKDRAAEKDGKRRHSDDEDEDSDGCGPNLSRP---------SGSRREKKVQRELLKPRQYKVDLDSKLGKTTVISKTADHSQAGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKVERSSLDQVKNRLEMMRRKTDEK----------KKEYNLTERVRELEEESERLKEYXXXXXXXXXXXXXXXXDADEEGT-----------GLDPDISAMMGFSGFGGSKK 221          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKT3_9PHAE1.740e-6362.92U1-type domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZCC8_9STRA9.450e-5259.06U1-type domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2WR40_9STRA9.160e-3949.37Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U2Z2_9STRA4.220e-3841.45Zinc finger matrin-type protein 2 n=1 Tax=Nannochl... [more]
W2PLF3_PHYPN1.490e-3751.05U1-type domain-containing protein n=11 Tax=Phytoph... [more]
UPI00026586012.050e-3548.54zinc finger matrin-type protein 2 n=1 Tax=Galendro... [more]
A0A0P1ATE8_PLAHL5.890e-3542.62Zinc finger matrin-type protein 2 n=1 Tax=Plasmopa... [more]
A0A8J5JCN4_9STRA5.920e-3546.84zf-C2H2_jaz domain-containing protein n=1 Tax=Phyt... [more]
A0A1Z5KJY6_FISSO7.140e-3448.00U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistuli... [more]
A0A7M7M6E7_VARDE8.410e-3445.64U1-type domain-containing protein n=1 Tax=Varroa d... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6524contigP-wetherbeei_contig6524:2..1028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQ99
Preferred nameSNU23
PFAMszf-C2H2_jaz,zf-met
Model size1027
Max annot lvl2759|Eukaryota
KEGG koko:K12848
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Exons1
Evalue9.01e-13
EggNOG OGsKOG4727@1|root,KOG4727@2759|Eukaryota
DescriptionmRNA splicing, via spliceosome
Cds size333
COG categoryA
BRITEko00000,ko00001,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186919.8698554-UTR-P-wetherbeei_contig6524:1..3821683186919.8698554-UTR-P-wetherbeei_contig6524:1..382Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6524 2..382 +
1683186919.889788-UTR-P-wetherbeei_contig6524:715..10281683186919.889788-UTR-P-wetherbeei_contig6524:715..1028Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6524 716..1028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186919.8797905-CDS-P-wetherbeei_contig6524:382..7151683186919.8797905-CDS-P-wetherbeei_contig6524:382..715Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6524 383..715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6524.1.1prot_P-wetherbeei_contig6524.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6524 383..715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6524.1.1

>prot_P-wetherbeei_contig6524.1.1 ID=prot_P-wetherbeei_contig6524.1.1|Name=mRNA_P-wetherbeei_contig6524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEED
ERERRERKEAKAAAKRKDAEARAAAASAAAAGGGGSDDDDGVDPAMAAMM
GFGGFGGGKK*
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mRNA from alignment at P-wetherbeei_contig6524:2..1028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6524.1.1 ID=mRNA_P-wetherbeei_contig6524.1.1|Name=mRNA_P-wetherbeei_contig6524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1027bp|location=Sequence derived from alignment at P-wetherbeei_contig6524:2..1028+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAAAACGTTCAGCGTCGGACGTGGGACGAGGAAGAGTACGCGAAACG AGCGAAGGAAAGAGCGGAGCGCGGGGACGACTACGTCGATGAGGCGGCCG CAGCGGCCGCCGCCCGCAAGCGTCCGCGCAAGGAGGAGTTCGAGCCAGCT CCGGCCGGGGCGGAAGGCCCTGCCCGTTCGCAGCGCGCCTACCTCAAGGC GCGGTCTGACAAAGTGGACTACGAGGGCAAGCTGGGCAAGACGCAGGTGG TGACGAGCGCCACCGCCCTCAGCAACGCCAGTGGCTACTACTGCGAGGTG TGCAAGTGCGTCCTGAAGGACAATCTCAACTACCTCGACCACATCAATGG TAAGAAGCACCAGCGCGCGCTCGGCTTCAGCATGCGGGTGGAGCGCTCCA CGGTGAACCAGGTGAAGAACCGCCTTAATATGCACCGCACGCGCCGCGAG GAGGCAGAAGGCGGCGCCGCGACGAAGCCCAGCGCCAAGGACGAGTACGA CGCCCGCGTACGTGCGGCGGAGGAGGAAGATGAGCGGGAGCGGCGCGAGC GGAAGGAGGCGAAGGCGGCGGCGAAGCGAAAGGATGCCGAAGCGCGCGCC GCCGCTGCCAGCGCGGCAGCGGCGGGCGGCGGCGGGAGCGACGATGACGA CGGCGTGGACCCTGCAATGGCGGCCATGATGGGCTTTGGCGGCTTTGGGG GAGGCAAGAAATGATAAATAGCTTTTTTCACAATTCACGGAGCTGCAGCT GCTCCTAGGTAGGATGTGGAAAAGAGAGTGACTGCTACTTGGGATCTCGT GTGCTTGTAAATAGAACATCCTTGCATTTTCTCAGCGATGTTTTTCTTGC GGTATCGGATTTCTCGAGGCAAAACGAACATGAGCAGAGGGGCGGAAGGA GATTTGCCCGTCATACTTGAATCACGTAAAAGACTTCCACGTCGAACAGA TTCCTAAGCACGTTCGAACATCTCCGGGACGGGGCGAGGTAGTTGGATCA GTCATGTTTAGAAAGATCTGCTGTAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6524:2..1028+

>mRNA_P-wetherbeei_contig6524.1.1 ID=mRNA_P-wetherbeei_contig6524.1.1|Name=mRNA_P-wetherbeei_contig6524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig6524:2..1028+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGTGGAGCGCTCCACGGTGAACCAGGTGAAGAACCGCCTTAATAT
GCACCGCACGCGCCGCGAGGAGGCAGAAGGCGGCGCCGCGACGAAGCCCA
GCGCCAAGGACGAGTACGACGCCCGCGTACGTGCGGCGGAGGAGGAAGAT
GAGCGGGAGCGGCGCGAGCGGAAGGAGGCGAAGGCGGCGGCGAAGCGAAA
GGATGCCGAAGCGCGCGCCGCCGCTGCCAGCGCGGCAGCGGCGGGCGGCG
GCGGGAGCGACGATGACGACGGCGTGGACCCTGCAATGGCGGCCATGATG
GGCTTTGGCGGCTTTGGGGGAGGCAAGAAATGA
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