prot_P-wetherbeei_contig6524.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig6524.1.1
Unique Nameprot_P-wetherbeei_contig6524.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length111
Homology
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BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.930e-12
Identity = 71/110 (64.55%), Postives = 78/110 (70.91%), Query Frame = 0 
Query:    1 MRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 110
            MRVERSTV+QVK+RL MH+ R E+   GA  KPSA+DE+D RVR AE+  XXXXXXXXXXXXXXXXXXXXXXXX                  DP MAAMMGFGGFGGG K
Sbjct:  136 MRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ--------------DPEMAAMMGFGGFGGGSK 231
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKT3_9PHAE3.930e-1264.55U1-type domain-containing protein n=2 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 36..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..72
IPR040107U4/U6.U5 small nuclear ribonucleoprotein component Snu23PANTHERPTHR45986ZINC FINGER MATRIN-TYPE PROTEIN 2coord: 1..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6524contigP-wetherbeei_contig6524:383..715 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6524.1.1mRNA_P-wetherbeei_contig6524.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig6524 2..1028 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig6524.1.1 ID=prot_P-wetherbeei_contig6524.1.1|Name=mRNA_P-wetherbeei_contig6524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEED
ERERRERKEAKAAAKRKDAEARAAAASAAAAGGGGSDDDDGVDPAMAAMM
GFGGFGGGKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040107Snu23