mRNA_P-wetherbeei_contig6524.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE) HSP 1 Score: 210 bits (535), Expect = 1.740e-63 Identity = 151/240 (62.92%), Postives = 172/240 (71.67%), Query Frame = 1
Query: 1 VENVQ-RRTWDEEEYAKRAKERAERGDDYV--DEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
V+NV+ RRTWD + Y +AKER E+GDDY DE A R +KEEF+PA GA GPA S RAYLK R KVD KLGKTQVVT+A+ S G+YCE+CKC LKD++NYLDHINGKKHQR LG+SMRVERSTV+QVK+RL MH+ R E+ GA KPSA+DE+D RVR AE+ XXXXXXXXXXXXXXXXXXXXXXXX DP MAAMMGFGGFGGG K
Sbjct: 10 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPAR----RSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ--------------DPEMAAMMGFGGFGGGSK 231
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA) HSP 1 Score: 180 bits (457), Expect = 9.450e-52 Identity = 101/171 (59.06%), Postives = 125/171 (73.10%), Query Frame = 1
Query: 1 VENVQRRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEA-EGGAATKPSAKDEYDARV 510
V NV RR+WD E Y K+AKER ERGD+ + A KEEF+PAP GA+GPA S+RAYLKAR++KVD E +L KTQV+TSA A S+ GY+CEVCKC+LKD++ YLDHINGKKHQRALGFSMRVERS+V VK +L+ R R E+A + A + SA EY+ R+
Sbjct: 15 VSNVVRRSWDVELYEKKAKERLERGDEVEEARPASSKAALN--KEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRKSAVQEYEERL 183
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA) HSP 1 Score: 146 bits (369), Expect = 9.160e-39 Identity = 117/237 (49.37%), Postives = 146/237 (61.60%), Query Frame = 1
Query: 1 VENVQRRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
V QRRTWD +EY K+A+ER R + + E ++EF A A GPA S RA+L R+ + E GKTQ++ G+YC+VC+C+LKD+ NYLDHINGKKHQR LGFSMRVERSTV QV R + + R+E+ E AT+P+A + Y+ R+ AA+E XXXXXXXXXXXXXXXXXXXXXX G+DP + A MGFGGFGGG K
Sbjct: 8 VGGAQRRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVRD--RDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKED-EMSVATRPTAIEAYEQRIAAAQEEEXXXXXXXXXXXXXXXXXXXXXXME----------------GMDPDLMAAMGFGGFGGGAK 225
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA) HSP 1 Score: 145 bits (365), Expect = 4.220e-38 Identity = 97/234 (41.45%), Postives = 128/234 (54.70%), Query Frame = 1
Query: 7 NVQRRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRP----RKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGF 696
NV+RRTWD E + K AKER E+ A+ +P ++EEF+ A AGA GP S+RAYLK R + E K+GK QVVT ++A GY+C++C+C+LKD++ YLDHINGKKHQ+ALG+SMRVER V++VK RLN + RRE+ + A + SA D Y ++ E GVDP MAA+MGFGGF
Sbjct: 17 NVERRTWDLEHFEKIAKERLEK-------EASGDVEKKKPGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALK-RREDEKKKAGPRESAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEG----------GVDPEMAALMGFGGF 232
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: W2PLF3_PHYPN (U1-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLF3_PHYPN) HSP 1 Score: 144 bits (362), Expect = 1.490e-37 Identity = 121/237 (51.05%), Postives = 144/237 (60.76%), Query Frame = 1
Query: 1 VENVQRRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
V NV R+TWD Y K A+ RAE G +E KEEF+ A GA GPA S RA+LKAR++K+ E +G +VV S N GYYCEVC+C LKD++ YLDHINGKKH R LG+SMRVERSTV+QVKNRL R+ + A K A ++Y+ +++AAEE XXXXXXXXXXXXXXXXXXXX D M AMMGFGGFGG KK
Sbjct: 13 VANVTRQTWDRAHYEKLAQLRAE-GKLEKEETKKVIKST----KEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVKSDDVSKNG-GYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKRKWDPL--MAKKLDAMEDYEKKLKAAEEEXXXXXXXXXXXXXXXXXXXXALEQDKSDDADKKPEAADEALDADAEMMAMMGFGGFGGSKK 241
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: UPI0002658601 (zinc finger matrin-type protein 2 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002658601) HSP 1 Score: 137 bits (345), Expect = 2.050e-35 Identity = 116/239 (48.54%), Postives = 139/239 (58.16%), Query Frame = 1
Query: 16 RRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARS-----QRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDA--RVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
RR WD +EY KRAKERAE GD+ R ++ E + GP+ S QR LK R KVD + +LGKT V++ S A GYYC VC CV+KD++N+LDHINGKKHQR LG SM+VERS+++QVKNRL M+R + EE K EY+ R+R EEXXXXXXXXXXXXXXXXX G+DP MAAMMGF GFGG KK
Sbjct: 10 RRKWDRDEYEKRAKERAE-GDN-----------EKRSLSDDDEDGCGPSVGPSSSREKKPQRELLKPRQYKVDLDSRLGKTTVISKTADHSQAGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKVERSSLDQVKNRLEMNRRKVEEK----------KKEYNLSERIREVEEXXXXXXXXXXXXXXXXXRKIDSEDQ-----------------GLDPDMAAMMGFSGFGGSKK 209
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A0P1ATE8_PLAHL (Zinc finger matrin-type protein 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATE8_PLAHL) HSP 1 Score: 138 bits (348), Expect = 5.890e-35 Identity = 101/237 (42.62%), Postives = 124/237 (52.32%), Query Frame = 1
Query: 1 VENVQRRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
V NV R+TWD Y K A+ RAE G V++ KEEF+ A A GPA S RA+LKAR+ K+ E +G +VV S LS SGYYCEVC+C LKD++ YLDHINGKKH R LG+SMRVERSTV+QVK+RL R+ + K A +EY+ +++AAEE D M AMMGFGGFGG KK
Sbjct: 66 VSNVVRQTWDRAHYEKLAQLRAEGG---VEKETTKKVIHSS--KEEFQTADESAAGPAGSARAFLKARTAKMSLETSVGTVKVVKS-DELSKNSGYYCEVCECSLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKDRLQSAAKRKWDPL--MTKKLDAMEEYEKKLKAAEEAEICLKRQKKEQRKAKKCESEDLSQDRVTAEETVDVVSES----DAEMMAMMGFGGFGGSKK 290
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A8J5JCN4_9STRA (zf-C2H2_jaz domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCN4_9STRA) HSP 1 Score: 136 bits (343), Expect = 5.920e-35 Identity = 111/237 (46.84%), Postives = 130/237 (54.85%), Query Frame = 1
Query: 1 VENVQRRTWDEEEYAKRAKERAERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
V NV R+TWD Y K A+ RAE + + A KEEF+ A GA GPA S RA+LKAR+ K+ E +G +VV S LS GYYCEVC+C LKD++ YLDHINGKKH R LG+SMRVERSTV+QVKNRL Y+ +++AAEE XXXXXXXXXXXXXX D M AMMGFGGFGG KK
Sbjct: 16 VANVARQTWDRAHYEKLAQLRAEGQLEKEETKKAIKSS-----KEEFQSANEGAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSED-LSKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQ---------------------NYEKKLKAAEEEEARVKXXXXXXXXXXXXXXDTLDQDKNDDADKKPEAADEVPDADAEMMAMMGFGGFGGSKK 225
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO) HSP 1 Score: 135 bits (339), Expect = 7.140e-34 Identity = 120/250 (48.00%), Postives = 156/250 (62.40%), Query Frame = 1
Query: 1 VENVQRRTWDEEEYAKRAKERAERGDD--YVDE--------AAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNAS-GYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRL-NMHRTRREEAEGGAATKPSAKDEYDARVRAAE-EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
V NV RR WD E Y +RAKER R ++ Y++E + A KEEF+ AP A GP S+RA+L+AR +D E K+G +++V++ A+ + G++C+VC C LKD+L YLDHINGKKHQR LGF+MRVERST +QV +RL ++ +T + + E + ++ A + E XXXXXXXX XXXXXXXXXXXXXXXXXX G+DP MAAMMGF GFGGG K
Sbjct: 18 VANVSRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDDSNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSISQTSKSQKETSLDDIVDLNELVQSKDEALQREREEKXXXXXXXXAMENMRXXXXXXXXXXXXXXXXXXEEVDFEGIDPEMAAMMGFSGFGGGNK 267
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Match: A0A7M7M6E7_VARDE (U1-type domain-containing protein n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7M6E7_VARDE) HSP 1 Score: 133 bits (335), Expect = 8.410e-34 Identity = 110/241 (45.64%), Postives = 135/241 (56.02%), Query Frame = 1
Query: 16 RRTWDEEEYAKRAKERA-------ERGDDYVDEAAAXXXXXXRPRKEEFEPAPAGAEGPARSQRAYLKARSDKVDYEGKLGKTQVVTSATALSNASGYYCEVCKCVLKDNLNYLDHINGKKHQRALGFSMRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDA--RVRAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPAMAAMMGFGGFGGGKK 711
RR WD EEY +RAK+RA DD +++ RP +G+ + QR LK R KVD + KLGKT V++ S A GYYC VC CV+KD++N+LDHINGKKHQR LG SM+VERS+++QVKNRL M R + +E K EY+ RVR EE XXXXXXXXXXXXXXXX G+DP ++AMMGF GFGG KK
Sbjct: 11 RRKWDREEYEQRAKDRAAEKDGKRRHSDDEDEDSDGCGPNLSRP---------SGSRREKKVQRELLKPRQYKVDLDSKLGKTTVISKTADHSQAGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKVERSSLDQVKNRLEMMRRKTDEK----------KKEYNLTERVRELEEESERLKEYXXXXXXXXXXXXXXXXDADEEGT-----------GLDPDISAMMGFSGFGGSKK 221 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6524.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6524.1.1 >prot_P-wetherbeei_contig6524.1.1 ID=prot_P-wetherbeei_contig6524.1.1|Name=mRNA_P-wetherbeei_contig6524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp MRVERSTVNQVKNRLNMHRTRREEAEGGAATKPSAKDEYDARVRAAEEEDback to top mRNA from alignment at P-wetherbeei_contig6524:2..1028+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6524.1.1 ID=mRNA_P-wetherbeei_contig6524.1.1|Name=mRNA_P-wetherbeei_contig6524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1027bp|location=Sequence derived from alignment at P-wetherbeei_contig6524:2..1028+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6524:2..1028+ >mRNA_P-wetherbeei_contig6524.1.1 ID=mRNA_P-wetherbeei_contig6524.1.1|Name=mRNA_P-wetherbeei_contig6524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig6524:2..1028+ (Phaeothamnion wetherbeei SAG_119_79)back to top |