mRNA_P-wetherbeei_contig52256.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52256.1.1
Unique NamemRNA_P-wetherbeei_contig52256.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52256.1.1 vs. uniprot
Match: A0A286U5Z1_9AGAM (Nucleotide-binding-oligomerization-domain like receptor n=1 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286U5Z1_9AGAM)

HSP 1 Score: 66.6 bits (161), Expect = 3.950e-11
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 VAFSPDGRLMVVARGDCAEVW-SYEGRKMIGPLKGHLQDVARVAFSPDGRRLATVSRDASTRLWDVS 198
            V+FSPDG  +    G    +W +  G+ +IGPL+GHL+DV  VAFSP+GR +A+ S D + ++WD S
Sbjct:  532 VSFSPDGTRLASGSGSTICIWEATSGKLIIGPLEGHLRDVKCVAFSPNGRLIASRSSDNTIKIWDAS 598          
BLAST of mRNA_P-wetherbeei_contig52256.1.1 vs. uniprot
Match: A0A7C9J5J0_9ACTN (Uncharacterized protein n=6 Tax=Herbidospora TaxID=28443 RepID=A0A7C9J5J0_9ACTN)

HSP 1 Score: 66.2 bits (160), Expect = 5.380e-11
Identity = 35/69 (50.72%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   13 PDGRLMVVARGDCAEVWSYEGRKMIGPLKGHLQDVARVAFSPDGRRLATVSRDASTRLWD-VSGFAQSP 216
            PDGR + +A G   EVW  + R++ G L GH  DV  VAFSPDGR LAT   D   RLWD V   A  P
Sbjct:  875 PDGRTLALAYGANVEVWDNQTRRLTGRLGGHDGDVRAVAFSPDGRLLATGGADRVIRLWDPVKATAAGP 943          
BLAST of mRNA_P-wetherbeei_contig52256.1.1 vs. uniprot
Match: A0A4V5UW76_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Herbidospora galbida TaxID=2575442 RepID=A0A4V5UW76_9ACTN)

HSP 1 Score: 65.9 bits (159), Expect = 7.240e-11
Identity = 34/69 (49.28%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   13 PDGRLMVVARGDCAEVWSYEGRKMIGPLKGHLQDVARVAFSPDGRRLATVSRDASTRLWD-VSGFAQSP 216
            PDGR + +A G   E+W  + R++ G L GH  DV  VAFSPDGR LAT   D   RLWD V   A  P
Sbjct:  420 PDGRTLALAYGPGVELWDNQTRRLTGRLGGHDGDVRAVAFSPDGRLLATGGADRVIRLWDPVKAVAAGP 488          
BLAST of mRNA_P-wetherbeei_contig52256.1.1 vs. uniprot
Match: UPI000A5FA4BF (hypothetical protein n=1 Tax=Herbidospora mongoliensis TaxID=688067 RepID=UPI000A5FA4BF)

HSP 1 Score: 65.9 bits (159), Expect = 7.360e-11
Identity = 32/62 (51.61%), Postives = 37/62 (59.68%), Query Frame = 1
Query:   13 PDGRLMVVARGDCAEVWSYEGRKMIGPLKGHLQDVARVAFSPDGRRLATVSRDASTRLWDVS 198
            PDGR + +A G   E+W  + R+  G L GH  DV  VAFSPDGR LAT   D   RLWD S
Sbjct:  877 PDGRTLALAYGSVVELWDNQTRRRTGRLGGHDGDVRAVAFSPDGRLLATGGADRVIRLWDPS 938          
BLAST of mRNA_P-wetherbeei_contig52256.1.1 vs. uniprot
Match: UPI000832B4D8 (TIR domain-containing protein n=1 Tax=Nocardia xishanensis TaxID=238964 RepID=UPI000832B4D8)

HSP 1 Score: 63.2 bits (152), Expect = 6.590e-10
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    1 VAFSPDGRLMVVARGDCAEVWSYEGRKMIGPLK-GHLQDVARVAFSPDGRRLATVSRDASTRLW 189
            V FSPDGR +   RGD  E+      + IG L  GH  +V  +AFSPDGRR+ +VSRDA+ RLW
Sbjct:  783 VQFSPDGRRIATTRGDAIELVDAGTWQRIGELMTGHKFEVNDLAFSPDGRRIVSVSRDATVRLW 846          
BLAST of mRNA_P-wetherbeei_contig52256.1.1 vs. uniprot
Match: UPI0012FB0D2E (hypothetical protein n=1 Tax=Herbidospora cretacea TaxID=28444 RepID=UPI0012FB0D2E)

HSP 1 Score: 62.4 bits (150), Expect = 1.220e-9
Identity = 30/60 (50.00%), Postives = 35/60 (58.33%), Query Frame = 1
Query:   13 PDGRLMVVARGDCAEVWSYEGRKMIGPLKGHLQDVARVAFSPDGRRLATVSRDASTRLWD 192
            PDGR + +  G   E+W  + R+  G L GH  DV  VAFSPDGR LAT   D   RLWD
Sbjct:  874 PDGRTLALVYGPEVELWDNQARRRTGRLGGHDGDVRAVAFSPDGRLLATGGADRVIRLWD 933          
BLAST of mRNA_P-wetherbeei_contig52256.1.1 vs. uniprot
Match: X0W063_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0W063_9ZZZZ)

HSP 1 Score: 61.6 bits (148), Expect = 1.400e-9
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    1 VAFSPDGRLMVVARGDCAEVWSYEGRKMIGPLKGHLQDVARVAFSPDGRRLATVSRDASTRLWDVSGFAQS 213
            V +SPDGR  V + G    +W     + IG L GH + V  VA SPDG+ LA+ SRD + RLWDV+   +S
Sbjct:   77 VCWSPDGRT-VASGGGTIRLWDVSSGQKIGALFGHAKLVRGVACSPDGKTLASASRDHTVRLWDVASRKES 146          
BLAST of mRNA_P-wetherbeei_contig52256.1.1 vs. uniprot
Match: A0A1V6DA35_9BACT (Translocation protein TolB n=1 Tax=Planctomycetes bacterium ADurb.Bin126 TaxID=1852903 RepID=A0A1V6DA35_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 2.300e-9
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 VAFSPDGRLMV----VARGDCAEVWSYEGRKMIGPLKGHLQDVARVAFSPDGRRLATVSRDASTRLWDVSGFAQ 210
            V  SPDG+L+     + R     +W+    +++  LKGH + +  +AFSPDGRRLAT ++D + R+WDV    Q
Sbjct: 1237 VQLSPDGKLLAAHYWLDRRLTTRIWTVPDGRLVHELKGHTKTLEDLAFSPDGRRLATSAQDGAIRIWDVDSGKQ 1310          
BLAST of mRNA_P-wetherbeei_contig52256.1.1 vs. uniprot
Match: A0A2N9LVL3_9BACT (WD-40 repeat protein n=1 Tax=Candidatus Sulfopaludibacter sp. SbA3 TaxID=2043164 RepID=A0A2N9LVL3_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 3.640e-9
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    1 VAFSPDGRLMVVA-RGDCAEVWSYEGRKMIGPLKGHLQDVARVAFSPDGRRLATVSRDASTRLWD 192
            VAFS DG L+     G   EVW+  G ++   LKGH   V  +AFSPDG+ LA+ S D S R+WD
Sbjct:  113 VAFSRDGTLLAAGGSGGTVEVWTLPGNELAATLKGHSGWVTGLAFSPDGKFLASSSLDRSVRIWD 177          
BLAST of mRNA_P-wetherbeei_contig52256.1.1 vs. uniprot
Match: UPI001E57FCF1 (hypothetical protein n=1 Tax=unclassified Blastopirellula TaxID=2647022 RepID=UPI001E57FCF1)

HSP 1 Score: 59.7 bits (143), Expect = 1.070e-8
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 VAFSPDGRLMVVARGDC-AEVWSYEGRKMIGPLKGHLQDVARVAFSPDGRRLATVSRDASTRLWDV--SGFAQSP 216
            +AFS DG +      D  A + S++GR+   PL+ H   V++V FSPD R+LAT S DA+  LWDV  S  AQSP
Sbjct:  197 IAFSGDGTMWASGGDDNRAILHSFDGRRTSIPLEAHWSRVSQVKFSPDSRKLATASFDATICLWDVRSSEVAQSP 271          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52256.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A286U5Z1_9AGAM3.950e-1146.27Nucleotide-binding-oligomerization-domain like rec... [more]
A0A7C9J5J0_9ACTN5.380e-1150.72Uncharacterized protein n=6 Tax=Herbidospora TaxID... [more]
A0A4V5UW76_9ACTN7.240e-1149.28Uncharacterized protein (Fragment) n=1 Tax=Herbido... [more]
UPI000A5FA4BF7.360e-1151.61hypothetical protein n=1 Tax=Herbidospora mongolie... [more]
UPI000832B4D86.590e-1051.56TIR domain-containing protein n=1 Tax=Nocardia xis... [more]
UPI0012FB0D2E1.220e-950.00hypothetical protein n=1 Tax=Herbidospora cretacea... [more]
X0W063_9ZZZZ1.400e-945.07Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A1V6DA35_9BACT2.300e-939.19Translocation protein TolB n=1 Tax=Planctomycetes ... [more]
A0A2N9LVL3_9BACT3.640e-947.69WD-40 repeat protein n=1 Tax=Candidatus Sulfopalud... [more]
UPI001E57FCF11.070e-846.67hypothetical protein n=1 Tax=unclassified Blastopi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52256contigP-wetherbeei_contig52256:1..219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog28444.JODQ01000018_gene7189
PFAMsAAA_16,TIR_2,WD40
Model size219
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.3e-09
EggNOG OGsCOG2319@1|root,COG2319@2|Bacteria,2GJN3@201174|Actinobacteria
DescriptionWD-40 repeat
Cds size192
COG categoryF
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.6419876-UTR-P-wetherbeei_contig52256:0..271683186783.6419876-UTR-P-wetherbeei_contig52256:0..27Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52256 1..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.6522515-CDS-P-wetherbeei_contig52256:27..2191683186783.6522515-CDS-P-wetherbeei_contig52256:27..219Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52256 28..219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52256.1.1prot_P-wetherbeei_contig52256.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52256 28..219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52256.1.1

>prot_P-wetherbeei_contig52256.1.1 ID=prot_P-wetherbeei_contig52256.1.1|Name=mRNA_P-wetherbeei_contig52256.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
MVVARGDCAEVWSYEGRKMIGPLKGHLQDVARVAFSPDGRRLATVSRDAS
TRLWDVSGFAQSP*
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mRNA from alignment at P-wetherbeei_contig52256:1..219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52256.1.1 ID=mRNA_P-wetherbeei_contig52256.1.1|Name=mRNA_P-wetherbeei_contig52256.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig52256:1..219+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGCGTTCTCGCCCGACGGCCGATTGATGGTGGTCGCCCGCGGCGACTG CGCCGAGGTCTGGTCCTATGAAGGGCGGAAGATGATCGGGCCGCTCAAGG GCCATCTCCAGGACGTCGCCCGGGTGGCGTTCTCGCCCGACGGCCGCCGC CTGGCCACCGTGTCCCGAGACGCGTCCACGCGGCTGTGGGACGTCTCGGG CTTCGCGCAATCTCCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52256:1..219+

>mRNA_P-wetherbeei_contig52256.1.1 ID=mRNA_P-wetherbeei_contig52256.1.1|Name=mRNA_P-wetherbeei_contig52256.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig52256:1..219+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGTCGCCCGCGGCGACTGCGCCGAGGTCTGGTCCTATGAAGGGCG
GAAGATGATCGGGCCGCTCAAGGGCCATCTCCAGGACGTCGCCCGGGTGG
CGTTCTCGCCCGACGGCCGCCGCCTGGCCACCGTGTCCCGAGACGCGTCC
ACGCGGCTGTGGGACGTCTCGGGCTTCGCGCAATCTCCGTGA
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